M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09146

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09146 82 1.71 Mlig455_021232

Neo: -

Age: -

 Mlig455_021232 {REF} {Length: 298} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}

Cumulative graph for MligTC455_09146

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.182 1.733 0.70625 1.00000
RegionR2 1.066 1.733 0.44226 0.83143
RegionR3 0.224 1.733 0.80848 1.00000
RegionR4 1.291 1.733 0.27745 0.58433
RegionR5 0.029 1.733 0.86246 1.00000
RegionR6 -1.09 1.733 0.99451 1.00000
RegionR7 0.271 1.733 0.83161 1.00000
RegionR8 0.39 1.733 0.85804 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.025 1.733 0.73685 1.00000
RegenerationR2 0.853 1.733 0.22360 0.67100
RegenerationR3 1.228 1.733 0.25154 0.68599
RegenerationR4 0.51 1.733 0.56571 0.89920
RegenerationR5 1.362 1.733 0.13376 0.54174
RegenerationR6 2.916 1.733 0.01422 0.14684
RegenerationBL 1.373 1.733 0.34641 0.71372
RegenerationTP 1.995 1.733 0.22858 0.67374


Genes with expression patterns similar to MligTC455_09146

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09146 82 1.71 Mlig455_021232

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_021232 {REF} {Length: 298} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}
2. MligTC455_54723 94 1.96 Mlig455_069765

Neo: -

Age: -

 3.901 - - 0.995 0.960 0.973 0.973 Mlig455_069765 {REF} {Length: 94} {NoTransDecoderORF} {RNA1509_47134} {RNA1310_82283} {RNA815_61293}
3. MligTC455_14112 88 1.83 Mlig455_015700

Neo: -

Age: -

 3.897 - - 0.985 0.953 0.983 0.976 Mlig455_015700 {REF} {Length: 936} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}
4. MligTC455_54456 89 1.85 Mlig455_047500

Neo: -

Age: -

 3.885 - - 0.979 0.932 0.992 0.982 Mlig455_047500 {REF} {Length: 437} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}
5. MligTC455_57036 84 1.75 Mlig455_033607

Neo: -

Age: -

 3.882 - - 0.981 0.984 0.978 0.939 Mlig455_033607 {REF} {Length: 266} {Pfam: Spt5 C-terminal nonapeptide repeat binding Spt4 [PF12815.9, score=22.1]} {RNA1509_46811} {RNA1310_82283} {RNA815_19376}
6. MligTC455_01924 85 1.78 Mlig455_054751

Neo: -

Age: -

 3.867 - - 0.991 0.951 0.992 0.933 Mlig455_054751 {REF} {Length: 325} {RNA1509_30941} {RNA1310_13121} {RNA815_19376}
7. MligTC455_02889 93 1.94 Mlig455_059386

Neo: -

Age: -

 3.867 - - 0.982 0.963 0.971 0.951 Mlig455_059386 {REF} {Length: 310} {NoTransDecoderORF} {RNA1509_46811} {RNA1310_82283} {RNA815_19376}
8. MligTC455_13513 94 1.95 Mlig455_040445

Neo: -

Age: -

 3.86 - - 0.977 0.981 0.979 0.923 Mlig455_040445 {REF} {Length: 306} {RNA1509_38807} {RNA1310_82283} {RNA815_19376}
9. MligTC455_34216 106 2.2 Mlig455_015400

Neo: -

Age: -

 3.846 - - 0.969 0.979 0.948 0.950 Mlig455_015400 {REF} {Length: 506} {NoTransDecoderORF} {RNA1509_46811} {RNA1310_13121} {RNA815_19376}
10. MligTC455_34220 97 2.03 Mlig455_058659

Neo: -

Age: -

 3.8 - - 0.947 0.949 0.938 0.966 Mlig455_058659 {REF} {Length: 345} {NoTransDecoderORF} {RNA1509_30941} {RNA1310_13121} {RNA815_19376}
11. MligTC455_34221 101 2.1 Mlig455_061426

Neo: -

Age: -

 3.769 - - 0.950 0.956 0.951 0.912 Mlig455_061426 {REF} {Length: 1527} {NoTransDecoderORF} {RNA1509_46811} {RNA1310_13121} {RNA815_39889}
12. MligTC455_34217 123 2.55 Mlig455_020532

Neo: -

Age: -

 3.711 - - 0.935 0.886 0.924 0.966 Mlig455_020532 {REF} {Length: 2530} {NoTransDecoderORF} {RNA1509_30941} {RNA1310_13121} {RNA815_19376}
13. MligTC455_34224 312 6.5 Mlig455_015246, Mlig455_056676, Mlig455_070843

Neo: -

Age: -

 2.796 - - 0.977 0.940 0.879 -

Mlig455_015246 {REF} {Length: 251} {RNA1509_46811} {RNA1310_82283} {RNA815_19376}

Mlig455_056676 {REF} {Length: 366} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}

Mlig455_070843 {REF} {Length: 312} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}
14. MligTC455_11519 52 1.09 Mlig455_060983

Neo: Int S/G2/M

Age: -

 0.972 - - - - 0.972 - Mlig455_060983 {REF} {Length: 4253} {RNA1509_22299} {RNA1310_3332} {RNA815_37095}
15. MligTC455_46757 66 1.38 Mlig455_014998

Neo: -

Age: -

 TBC1D25 0.962 - - - - 0.962 - Mlig455_014998 {REF} {Length: 4681} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=111.0]} {Human: ENSG00000068354, TBC1D25, TBC1 domain family member 25, [Score=218, Expect=1e-60]} {Mouse: ENSMUSG00000039201, Tbc1d25, TBC1 domain family, member 25, [Score=219, Expect=4e-61]} {Dmel: FBgn0034009, CG8155, [Score=238, Expect=4e-66]} {Celegans: WBGene00008444, tbc-14, TBC (Tre-2/Bub2/Cdc16) domain family, [Score=126, Expect=6e-30]} {Smed: dd_Smed_v6_8922_0_1, dd_Smed_v6_8922_0_1, [Score=353, Expect=2e-110]} {RNA1509_44648} {RNA1310_5636} {RNA815_2249.1}
16. MligTC455_07121 103 2.15 Mlig455_006128

Neo: -

Age: -

Region-enriched R4: 4.455/0.04090

 0.953 - - 0.953 - - - Mlig455_006128 {REF} {Length: 746} {NoTransDecoderORF} {RNA1310_148036}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA