M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34216

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34216 106 2.20 Mlig455_015400

Neo: -

Age: -

 Mlig455_015400 {REF} {Length: 506} {NoTransDecoderORF} {RNA1509_46811} {RNA1310_13121} {RNA815_19376}

Cumulative graph for MligTC455_34216

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.448 1.939 0.85841 1.00000
RegionR2 1.347 1.939 0.20429 0.56630
RegionR3 0.161 1.939 0.86953 1.00000
RegionR4 0.351 1.939 0.64855 0.95154
RegionR5 -0.265 1.939 0.81134 1.00000
RegionR6 -0.823 1.939 0.51784 1.00000
RegionR7 -0.204 1.939 0.90537 1.00000
RegionR8 -1.015 1.939 0.69640 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.465 1.939 0.72821 1.00000
RegenerationR2 0.76 1.939 0.21138 0.65856
RegenerationR3 1.077 1.939 0.21969 0.65614
RegenerationR4 0.437 1.939 0.56414 0.89881
RegenerationR5 1.08 1.939 0.15177 0.57052
RegenerationR6 2.448 1.939 0.00974 0.12167
RegenerationBL 1.414 1.939 0.30481 0.66873
RegenerationTP 2.017 1.939 0.20382 0.64548


Genes with expression patterns similar to MligTC455_34216

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34216 106 2.2 Mlig455_015400

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_015400 {REF} {Length: 506} {NoTransDecoderORF} {RNA1509_46811} {RNA1310_13121} {RNA815_19376}
2. MligTC455_13513 94 1.95 Mlig455_040445

Neo: -

Age: -

 3.868 - - 0.976 0.944 0.981 0.967 Mlig455_040445 {REF} {Length: 306} {RNA1509_38807} {RNA1310_82283} {RNA815_19376}
3. MligTC455_57036 84 1.75 Mlig455_033607

Neo: -

Age: -

 3.865 - - 0.959 0.962 0.983 0.961 Mlig455_033607 {REF} {Length: 266} {Pfam: Spt5 C-terminal nonapeptide repeat binding Spt4 [PF12815.9, score=22.1]} {RNA1509_46811} {RNA1310_82283} {RNA815_19376}
4. MligTC455_09146 82 1.71 Mlig455_021232

Neo: -

Age: -

 3.846 - - 0.969 0.979 0.948 0.950 Mlig455_021232 {REF} {Length: 298} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}
5. MligTC455_02889 93 1.94 Mlig455_059386

Neo: -

Age: -

 3.835 - - 0.985 0.933 0.974 0.943 Mlig455_059386 {REF} {Length: 310} {NoTransDecoderORF} {RNA1509_46811} {RNA1310_82283} {RNA815_19376}
6. MligTC455_54723 94 1.96 Mlig455_069765

Neo: -

Age: -

 3.835 - - 0.973 0.946 0.962 0.954 Mlig455_069765 {REF} {Length: 94} {NoTransDecoderORF} {RNA1509_47134} {RNA1310_82283} {RNA815_61293}
7. MligTC455_01924 85 1.78 Mlig455_054751

Neo: -

Age: -

 3.817 - - 0.967 0.924 0.973 0.953 Mlig455_054751 {REF} {Length: 325} {RNA1509_30941} {RNA1310_13121} {RNA815_19376}
8. MligTC455_34220 97 2.03 Mlig455_058659

Neo: -

Age: -

 3.805 - - 0.947 0.924 0.974 0.960 Mlig455_058659 {REF} {Length: 345} {NoTransDecoderORF} {RNA1509_30941} {RNA1310_13121} {RNA815_19376}
9. MligTC455_34221 101 2.1 Mlig455_061426

Neo: -

Age: -

 3.76 - - 0.946 0.939 0.980 0.895 Mlig455_061426 {REF} {Length: 1527} {NoTransDecoderORF} {RNA1509_46811} {RNA1310_13121} {RNA815_39889}
10. MligTC455_54456 89 1.85 Mlig455_047500

Neo: -

Age: -

 3.752 - - 0.946 0.901 0.947 0.958 Mlig455_047500 {REF} {Length: 437} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}
11. MligTC455_14112 88 1.83 Mlig455_015700

Neo: -

Age: -

 3.749 - - 0.970 0.918 0.929 0.932 Mlig455_015700 {REF} {Length: 936} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}
12. MligTC455_34224 312 6.5 Mlig455_015246, Mlig455_056676, Mlig455_070843

Neo: -

Age: -

 2.741 - - 0.984 0.882 0.875 -

Mlig455_015246 {REF} {Length: 251} {RNA1509_46811} {RNA1310_82283} {RNA815_19376}

Mlig455_056676 {REF} {Length: 366} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}

Mlig455_070843 {REF} {Length: 312} {RNA1509_30941} {RNA1310_82283} {RNA815_19376}
13. MligTC455_07121 103 2.15 Mlig455_006128

Neo: -

Age: -

Region-enriched R4: 4.455/0.04090

 1.694 - - 0.968 - - 0.726 Mlig455_006128 {REF} {Length: 746} {NoTransDecoderORF} {RNA1310_148036}
14. MligTC455_37013 102 2.12 Mlig455_028784

Neo: -

Age: -

 RPA1 0.957 - - 0.957 - - - Mlig455_028784 {REF} {Length: 4559} {Pfam: Replication protein A OB domain [PF16900.7, score=62.3]; OB-fold nucleic acid binding domain [PF01336.27, score=43.1]} {Human: ENSG00000132383, RPA1, replication protein A1, [Score=92.4, Expect=7e-20]} {Mouse: ENSMUSG00000000751, Rpa1, replication protein A1, [Score=86.3, Expect=5e-18]} {RNA1509_12100} {RNA1310_68428} {RNA815_14259}
15. MligTC455_23171 303 6.31 Mlig455_004997

Neo: -

Age: Up-Down-Down

 GRIA2 0.952 - - - - 0.952 - Mlig455_004997 {REF} {Length: 2499} {TRANSSPLICED} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=89.2]; Ligand-gated ion channel [PF00060.28, score=67.1]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=55.5]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=135, Expect=3e-35]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=134, Expect=7e-35]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=130, Expect=1e-33]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=135, Expect=2e-35]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=134, Expect=5e-35]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=130, Expect=8e-34]} {Dmel: FBgn0031634, Ir25a, Ionotropic receptor 25a, [Score=110, Expect=5e-27]} {Celegans: WBGene00001617, glr-6, GLutamate Receptor family (AMPA), [Score=106, Expect=1e-25]} {Smed: dd_Smed_v6_7562_0_1, dd_Smed_v6_7562_0_1, [Score=129, Expect=1e-33]} {RNA1509_11251} {RNA1310_13034} {RNA815_2128.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA