M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09332

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09332 17 0.35 Mlig455_054514, Mlig455_055433

Neo: -

Age: -

Mlig455_054514 {REF} {Length: 101} {NoTransDecoderORF}

Mlig455_055433 {REF} {Length: 225} {NoTransDecoderORF}

Cumulative graph for MligTC455_09332

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.789 0.624 1.00000 1.00000
RegionR2 1.842 0.624 1.00000 1.00000
RegionR3 1.629 0.624 0.99961 1.00000
RegionR4 -0.234 0.624 0.99969 1.00000
RegionR5 1.439 0.624 1.00000 1.00000
RegionR6 1.56 0.624 1.00000 1.00000
RegionR7 0.344 0.624 1.00000 1.00000
RegionR8 -1.79 0.624 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.574 0.624 1.00000 1.00000
RegenerationR2 2.439 0.624 0.40706 0.81832
RegenerationR3 2.241 0.624 0.31641 0.74569
RegenerationR4 2.924 0.624 0.32881 0.76384
RegenerationR5 -0.206 0.624 1.00000 1.00000
RegenerationR6 -0.328 0.624 1.00000 1.00000
RegenerationBL 0.22 0.624 1.00000 1.00000
RegenerationTP 4.719 0.624 0.39093 0.82326


Genes with expression patterns similar to MligTC455_09332

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09332 17 0.35 Mlig455_054514, Mlig455_055433

Neo: -

Age: -

 1 - - - - 1.000 -

Mlig455_054514 {REF} {Length: 101} {NoTransDecoderORF}

Mlig455_055433 {REF} {Length: 225} {NoTransDecoderORF}
2. MligTC455_10740 15 0.32 Mlig455_061543

Neo: -

Age: -

 0.999 - - - - 0.999 - Mlig455_061543 {REF} {Length: 3618} {Pfam: Starch binding domain [PF00686.21, score=30.6]} {RNA1509_32396} {RNA1310_55992} {RNA815_16867}
3. MligTC455_30737 10 0.22 Mlig455_059743

Neo: -

Age: -

 NYNRIN 0.996 - - - - 0.996 - Mlig455_059743 {REF} {Length: 4760} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=116.3]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=114.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.4]; Integrase zinc binding domain [PF17921.3, score=74.8]; Integrase core domain [PF00665.28, score=54.4]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=95.1, Expect=3e-19]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=104, Expect=3e-22]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=392, Expect=2e-121]} {RNA1509_52755} {RNA1310_2440.1} {RNA815_21486}
4. MligTC455_36455 8 0.16 Mlig455_038435

Neo: -

Age: -

 0.993 - - - - 0.993 - Mlig455_038435 {REF} {Length: 4019} {RNA1509_56529} {RNA1310_62490}
5. MligTC455_39204 17 0.36 Mlig455_020742

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_020742 {REF} {Length: 702} {RNA1509_42238} {RNA1310_16552} {RNA815_33632}
6. MligTC455_39205 14 0.28 Mlig455_020814

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_020814 {REF} {Length: 640} {RNA1509_42238} {RNA1310_15237.1} {RNA815_33632}
7. MligTC455_14098 17 0.36 Mlig455_017789

Neo: -

Age: -

 0.989 - - - - 0.989 - Mlig455_017789 {REF} {Length: 985} {RNA1509_36030} {RNA1310_69203.2} {RNA815_32123}
8. MligTC455_33519 77 1.61 Mlig455_035174

Neo: -

Age: -

 RHBDL3 0.989 - - - - 0.989 - Mlig455_035174 {REF} {Length: 3074} {Pfam: Rhomboid family [PF01694.24, score=117.4]; EF-hand domain pair [PF13499.8, score=24.1]; EF-hand domain pair [PF13833.8, score=21.9]; EF hand [PF13202.8, score=20.3]; EF hand [PF00036.34, score=20.1]} {Human: ENSG00000141314, RHBDL3, rhomboid like 3, [Score=171, Expect=1e-48]; ENSG00000158315, RHBDL2, rhomboid like 2, [Score=171, Expect=2e-49]} {Mouse: ENSMUSG00000043333, Rhbdl2, rhomboid like 2, [Score=188, Expect=4e-56]} {Dmel: FBgn0020248, stet, stem cell tumor, [Score=177, Expect=4e-50]} {Celegans: WBGene00004400, rom-1, Rhomboid-related protein 1, [Score=145, Expect=1e-39]} {Smed: dd_Smed_v6_13835_0_1, dd_Smed_v6_13835_0_1, [RH, Score=332, Expect=5e-111]} {RNA1310_72334} {RNA815_32924}
9. MligTC455_10553 2 0.04 Mlig455_029078

Neo: -

Age: -

 HCRTR2 0.98 - - - - 0.980 - Mlig455_029078 {REF} {Length: 1331} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=163.7]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=28.9]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=23.3]} {Human: ENSG00000137252, HCRTR2, hypocretin receptor 2, [Score=207, Expect=2e-61]} {Mouse: ENSMUSG00000032360, Hcrtr2, hypocretin (orexin) receptor 2, [Score=206, Expect=7e-61]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=133, Expect=2e-33]} {Celegans: WBGene00021439, ckr-2, CholecystoKinin Receptor homolog; Cholecystokinin receptor 2 splice isoform b, [Score=106, Expect=6e-25]} {Smed: dd_Smed_v6_22624_0_1, dd_Smed_v6_22624_0_1, [Score=193, Expect=3e-57]}
10. MligTC455_14331 9 0.18 Mlig455_036281

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_036281 {REF} {Length: 831} {NoTransDecoderORF} {RNA1509_35447} {RNA1310_64055} {RNA815_50141}
11. MligTC455_06823 18 0.37 Mlig455_048853

Neo: Germline

Age: -

Region-enriched R4: 4.530/0.00960

 0.975 - - - - 0.975 - Mlig455_048853 {REF} {Length: 804} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_51934} {RNA1310_14826} {RNA815_23224}
12. MligTC455_41885 78 1.61 Mlig455_004165

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.390

Region-specific R4: 7.361

Region-enriched R4: 4.826/0.00765

 0.974 - - - - 0.974 - Mlig455_004165 {REF} {Length: 3286} {Smed: dd_Smed_v6_22487_0_1, dd_Smed_v6_22487_0_1, [Score=75.9, Expect=3e-15]} {RNA1509_14367, RNA1509_16009, RNA1509_47653} {RNA1310_21432, RNA1509_14367, RNA1509_47653} {RNA1509_14367, RNA1509_47653, RNA815_11018}
13. MligTC455_07504 85 1.77 Mlig455_001458

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_001458 {REF} {Length: 4238} {RNA1310_78279}
14. MligTC455_06420 81 1.69 Mlig455_004566

Neo: -

Age: -

 SLC25A38 0.966 - - - - 0.966 - Mlig455_004566 {REF} {Length: 2175} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=143.1]} {Human: ENSG00000144659, SLC25A38, solute carrier family 25 member 38, [RH, Score=130, Expect=3e-35]} {Mouse: ENSMUSG00000032519, Slc25a38, solute carrier family 25, member 38, [RH, Score=127, Expect=6e-34]} {Dmel: FBgn0028646, aralar1, [Score=100, Expect=2e-23]} {Celegans: WBGene00020422, T10F2.2, [Score=62.8, Expect=4e-11]} {Smed: dd_Smed_v6_12659_0_1, dd_Smed_v6_12659_0_1, [RH, Score=149, Expect=4e-43]} {RNA1310_18015.1} {RNA815_19336}
15. MligTC455_33344 32 0.66 Mlig455_002534

Neo: -

Age: Up-Down-Down

 0.966 - - - - 0.966 - Mlig455_002534 {REF} {Length: 4448} {RNA1509_26266} {RNA1310_121715} {RNA815_60971}
16. MligTC455_55090 12 0.26 Mlig455_002755

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_002755 {REF} {Length: 27} {NoTransDecoderORF}
17. MligTC455_25816 6 0.13 Mlig455_006375, Mlig455_038003, Mlig455_038005

Neo: -

Age: -

 NOTCH1, PIF1 0.952 - - - - 0.952 -

Mlig455_006375 {REF} {Length: 1376} {Pfam: EGF-like domain [PF00008.29, score=73.9]; Human growth factor-like EGF [PF12661.9, score=30.5]; EGF-like domain [PF07974.15, score=25.2]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=150, Expect=3e-38]} {Mouse: ENSMUSG00000026923, Notch1, notch 1, [Score=153, Expect=2e-39]} {Dmel: FBgn0259685, crb, crumbs, [Score=153, Expect=8e-40]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=128, Expect=3e-31]} {Smed: dd_Smed_v6_12111_0_1, dd_Smed_v6_12111_0_1, [Score=129, Expect=5e-32]} {RNA1509_39306} {RNA1310_29543} {RNA815_693.1}

Mlig455_038003 {REF} {Length: 5339} {Pfam: PIF1-like helicase [PF05970.16, score=324.5]; Helitron helicase-like domain at N-terminus [PF14214.8, score=175.8]; AAA domain [PF13604.8, score=57.1]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.8]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=127, Expect=6e-29]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=125, Expect=1e-28]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=115, Expect=9e-26]} {Celegans: WBGene00018020, F33H12.6, [RH, Score=746, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=104, Expect=1e-22]} {RNA1310_14584.2}

Mlig455_038005 {REF} {Length: 5339} {Pfam: PIF1-like helicase [PF05970.16, score=324.5]; Helitron helicase-like domain at N-terminus [PF14214.8, score=175.8]; AAA domain [PF13604.8, score=57.1]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.8]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=127, Expect=6e-29]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=125, Expect=1e-28]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=115, Expect=9e-26]} {Celegans: WBGene00018020, F33H12.6, [RH, Score=746, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=104, Expect=1e-22]} {RNA1310_14584.2}
18. MligTC455_27851 7 0.14 Mlig455_025984

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_025984 {REF} {Length: 1377} {Pfam: Hsp20/alpha crystallin family [PF00011.23, score=90.2]; HSP20-like domain found in ArsA [PF17886.3, score=29.4]} {Dmel: FBgn0001225, Hsp26, Heat shock protein 26, [RH, Score=57.8, Expect=1e-09]} {Celegans: WBGene00008592, F08H9.4, [RH, Score=61.2, Expect=2e-11]} {Smed: dd_Smed_v6_1039_0_1, dd_Smed_v6_1039_0_1, [RH, Score=99.8, Expect=2e-24]} {RNA1509_26837} {RNA1310_48105} {RNA815_21766}
19. MligTC455_21337 11 0.23 Mlig455_047767

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_047767 {REF} {Length: 4066} {NoTransDecoderORF} {RNA1509_47234} {RNA1310_2938.1} {RNA815_14343.2}
20. MligTC455_11839 17 0.36 Mlig455_024549

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_024549 {REF} {Length: 1820} {NoTransDecoderORF} {RNA1509_48234} {RNA1310_27201.1, RNA1509_48234} {RNA1509_48234, RNA815_41917}
21. MligTC455_16842 9 0.18 Mlig455_045522

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_045522 {REF} {Length: 592} {NoTransDecoderORF} {RNA1310_109257}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA