M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_16842

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_16842 9 0.18 Mlig455_045522

Neo: -

Age: -

 Mlig455_045522 {REF} {Length: 592} {NoTransDecoderORF} {RNA1310_109257}

Cumulative graph for MligTC455_16842

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_16842

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11839 17 0.36 Mlig455_024549

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_024549 {REF} {Length: 1820} {NoTransDecoderORF} {RNA1509_48234} {RNA1310_27201.1, RNA1509_48234} {RNA1509_48234, RNA815_41917}
2. MligTC455_16842 9 0.18 Mlig455_045522

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_045522 {REF} {Length: 592} {NoTransDecoderORF} {RNA1310_109257}
3. MligTC455_09020 15 0.32 Mlig455_000455

Neo: -

Age: -

 0.997 - - - - 0.997 - Mlig455_000455 {REF} {Length: 1010} {NoTransDecoderORF}
4. MligTC455_18332 14 0.28 Mlig455_029709

Neo: -

Age: -

 FOXD4 0.997 - - - - 0.997 - Mlig455_029709 {REF} {Length: 1306} {Pfam: Forkhead domain [PF00250.20, score=129.2]} {Human: ENSG00000170122, FOXD4, forkhead box D4, [RH, Score=189, Expect=1e-56]} {Mouse: ENSMUSG00000067261, Foxd3, forkhead box D3, [Score=182, Expect=4e-54]; ENSMUSG00000116152, Foxd3, forkhead box D3, [Score=182, Expect=4e-54]; ENSMUSG00000078302, Foxd1, forkhead box D1, [Score=174, Expect=6e-51]} {Dmel: FBgn0004896, fd59A, forkhead domain 59A, [RH, Score=202, Expect=7e-62]} {Celegans: WBGene00006853, unc-130, [Score=190, Expect=1e-58]} {Smed: dd_Smed_v6_23249_0_1, dd_Smed_v6_23249_0_1, [Score=203, Expect=1e-62]} {RNA1310_78891}
5. MligTC455_41885 78 1.61 Mlig455_004165

Neo: Germline

Age: Up-Down-Down, logFC(26M/2M)=-0.390

Region-specific R4: 7.361

Region-enriched R4: 4.826/0.00765

 0.996 - - - - 0.996 - Mlig455_004165 {REF} {Length: 3286} {Smed: dd_Smed_v6_22487_0_1, dd_Smed_v6_22487_0_1, [Score=75.9, Expect=3e-15]} {RNA1509_14367, RNA1509_16009, RNA1509_47653} {RNA1310_21432, RNA1509_14367, RNA1509_47653} {RNA1509_14367, RNA1509_47653, RNA815_11018}
6. MligTC455_10553 2 0.04 Mlig455_029078

Neo: -

Age: -

 HCRTR2 0.993 - - - - 0.993 - Mlig455_029078 {REF} {Length: 1331} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=163.7]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=28.9]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=23.3]} {Human: ENSG00000137252, HCRTR2, hypocretin receptor 2, [Score=207, Expect=2e-61]} {Mouse: ENSMUSG00000032360, Hcrtr2, hypocretin (orexin) receptor 2, [Score=206, Expect=7e-61]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=133, Expect=2e-33]} {Celegans: WBGene00021439, ckr-2, CholecystoKinin Receptor homolog; Cholecystokinin receptor 2 splice isoform b, [Score=106, Expect=6e-25]} {Smed: dd_Smed_v6_22624_0_1, dd_Smed_v6_22624_0_1, [Score=193, Expect=3e-57]}
7. MligTC455_08208 16 0.34 Mlig455_060343

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_060343 {REF} {Length: 392} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_52997} {RNA1310_51420} {RNA815_20481.2}
8. MligTC455_10688 2 0.05 Mlig455_046122

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_046122 {REF} {Length: 278} {NoTransDecoderORF}
9. MligTC455_10898 23 0.48 Mlig455_042130

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_042130 {REF} {Length: 1395} {Pfam: F5/8 type C domain [PF00754.27, score=27.1]; PAN domain [PF00024.28, score=18.5]} {RNA1310_31572} {RNA815_19460}
10. MligTC455_30579 3 0.07 Mlig455_062783

Neo: -

Age: Down-Up-Up

 0.992 - - - - 0.992 - Mlig455_062783 {REF} {Length: 2008} {Celegans: WBGene00015646, mlt-10, [Score=171, Expect=5e-45]} {RNA1509_25856} {RNA1310_22909} {RNA815_18032}
11. MligTC455_52568 15 0.32 Mlig455_018332

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_018332 {REF} {Length: 784}
12. MligTC455_56932 1 0.03 Mlig455_071056

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_071056 {REF} {Length: 126} {NoTransDecoderORF} {RNA1310_39216.1}
13. MligTC455_46657 38 0.78 Mlig455_012068

Neo: -

Age: -

 TPCN2 0.987 - - - - 0.987 - Mlig455_012068 {REF} {Length: 3085} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=73.6]} {Human: ENSG00000162341, TPCN2, two pore segment channel 2, [Score=74.3, Expect=4e-14]} {Mouse: ENSMUSG00000048677, Tpcn2, two pore segment channel 2, [Score=77.0, Expect=3e-15]} {Smed: dd_Smed_v6_8333_0_1, dd_Smed_v6_8333_0_1, [Score=95.5, Expect=1e-21]} {RNA1509_51248} {RNA1310_6971.1} {RNA815_23671}
14. MligTC455_14098 17 0.36 Mlig455_017789

Neo: -

Age: -

 0.986 - - - - 0.986 - Mlig455_017789 {REF} {Length: 985} {RNA1509_36030} {RNA1310_69203.2} {RNA815_32123}
15. MligTC455_48894 109 2.27 Mlig455_039096

Neo: -

Age: Down-Up-Down

 0.985 - - - - 0.985 - Mlig455_039096 {REF} {Length: 3451} {TRANSSPLICED} {Pfam: Pectinacetylesterase [PF03283.15, score=169.9]} {RNA1509_20436} {RNA1310_16195.1} {RNA815_9150}
16. MligTC455_06183 27 0.55 Mlig455_039162

Neo: -

Age: -

 0.984 - - - - 0.984 - Mlig455_039162 {REF} {Length: 389} {NoTransDecoderORF}
17. MligTC455_26419 3 0.07 Mlig455_057242

Neo: -

Age: -

 TRPM3 0.982 - - - - 0.982 - Mlig455_057242 {REF} {Length: 3957} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=50.3]; Ankyrin repeats (many copies) [PF13637.8, score=37.2]; Ankyrin repeat [PF13606.8, score=25.6]; Ankyrin repeats (many copies) [PF13857.8, score=22.7]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=70.5, Expect=2e-11]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=69.7, Expect=3e-11]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=69.3, Expect=4e-11]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=71.6, Expect=6e-12]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=70.5, Expect=1e-11]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=80.1, Expect=9e-15]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=62.4, Expect=2e-09]} {Smed: dd_Smed_v6_11259_0_12, dd_Smed_v6_11259_0_12, [Score=90.1, Expect=4e-18]} {RNA1509_29189} {RNA1310_64091} {RNA815_42967}
18. MligTC455_39204 17 0.36 Mlig455_020742

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_020742 {REF} {Length: 702} {RNA1509_42238} {RNA1310_16552} {RNA815_33632}
19. MligTC455_39205 14 0.28 Mlig455_020814

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_020814 {REF} {Length: 640} {RNA1509_42238} {RNA1310_15237.1} {RNA815_33632}
20. MligTC455_45902 16 0.33 Mlig455_065158

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_065158 {REF} {Length: 1544} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=26.9]} {RNA1310_16870} {RNA815_15768}
21. MligTC455_45761 2 0.04 Mlig455_069954

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_069954 {REF} {Length: 1707} {NoTransDecoderORF} {RNA1310_147977} {RNA815_46078}
22. MligTC455_36090 14 0.28 Mlig455_039249

Neo: -

Age: Up-Down-Up

 0.973 - - - - 0.973 - Mlig455_039249 {REF} {Length: 2858} {TRANSSPLICED} {RNA1509_30307} {RNA1310_674, RNA1509_30307} {RNA1509_30307, RNA815_24710}
23. MligTC455_21462 18 0.38 Mlig455_013221

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_013221 {REF} {Length: 1150} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_38412} {RNA1310_33160.1} {RNA815_51877}
24. MligTC455_33519 77 1.61 Mlig455_035174

Neo: -

Age: -

 RHBDL3 0.966 - - - - 0.966 - Mlig455_035174 {REF} {Length: 3074} {Pfam: Rhomboid family [PF01694.24, score=117.4]; EF-hand domain pair [PF13499.8, score=24.1]; EF-hand domain pair [PF13833.8, score=21.9]; EF hand [PF13202.8, score=20.3]; EF hand [PF00036.34, score=20.1]} {Human: ENSG00000141314, RHBDL3, rhomboid like 3, [Score=171, Expect=1e-48]; ENSG00000158315, RHBDL2, rhomboid like 2, [Score=171, Expect=2e-49]} {Mouse: ENSMUSG00000043333, Rhbdl2, rhomboid like 2, [Score=188, Expect=4e-56]} {Dmel: FBgn0020248, stet, stem cell tumor, [Score=177, Expect=4e-50]} {Celegans: WBGene00004400, rom-1, Rhomboid-related protein 1, [Score=145, Expect=1e-39]} {Smed: dd_Smed_v6_13835_0_1, dd_Smed_v6_13835_0_1, [RH, Score=332, Expect=5e-111]} {RNA1310_72334} {RNA815_32924}
25. MligTC455_10740 15 0.32 Mlig455_061543

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_061543 {REF} {Length: 3618} {Pfam: Starch binding domain [PF00686.21, score=30.6]} {RNA1509_32396} {RNA1310_55992} {RNA815_16867}
26. MligTC455_05848 1 0.03 Mlig455_034834

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_034834 {REF} {Length: 247} {NoTransDecoderORF}
27. MligTC455_40378 118 2.45 Mlig455_016533, Mlig455_016589

Neo: -

Age: -

 0.963 - - - - 0.963 -

Mlig455_016533 {REF} {Length: 379} {NoTransDecoderORF} {RNA1310_98973} {RNA815_54538}

Mlig455_016589 {REF} {Length: 460} {NoTransDecoderORF} {RNA1310_98973} {RNA815_54538}
28. MligTC455_24275 220 4.58 Mlig455_014214

Neo: -

Age: Down-Up-Up

 0.962 - - - - 0.962 - Mlig455_014214 {REF} {Length: 1681} {RNA1509_25000} {RNA1310_47554} {RNA815_21963}
29. MligTC455_17652 18 0.37 Mlig455_050566

Neo: -

Age: -

Region-enriched R8: 5.704/0.00683
Region-enriched R7: 4.641/0.00647
Region-enriched R2: 3.617/0.01372

 0.961 - - - - 0.961 - Mlig455_050566 {REF} {Length: 646} {NoTransDecoderORF} {RNA1310_71944}
30. MligTC455_12842 17 0.36 Mlig455_033183

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_033183 {REF} {Length: 1343} {NoTransDecoderORF} {RNA1509_51881} {RNA1310_85012} {RNA815_44631}
31. MligTC455_07145 4 0.08 Mlig455_019416

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_019416 {REF} {Length: 953} {NoTransDecoderORF} {RNA1509_45595} {RNA1310_6806} {RNA815_7856.1}
32. MligTC455_50828 27 0.57 Mlig455_037962

Neo: -

Age: -

 WSCD2 0.959 - - - - 0.959 - Mlig455_037962 {REF} {Length: 911} {Pfam: WSC domain [PF01822.21, score=58.4]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=52.8, Expect=1e-07]; ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [Score=50.8, Expect=5e-07]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=53.9, Expect=3e-08]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=55.5, Expect=7e-09]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=46.2, Expect=8e-06]} {RNA1509_59284} {RNA1310_52794.1} {RNA815_21749.1}
33. MligTC455_34834 126 2.62 Mlig455_036550, Mlig455_057800, Mlig455_057817

Neo: Int S/G2/M

Age: -

 0.958 - - - - 0.958 -

Mlig455_036550 {REF} {Length: 2962} {RNA1509_42812} {RNA1310_32131} {RNA815_46120}

Mlig455_057800 {REF} {Length: 3033} {RNA1509_42812} {RNA1310_32131} {RNA815_46120}

Mlig455_057817 {REF} {Length: 2955} {RNA1509_42812} {RNA1310_32131} {RNA815_46120}
34. MligTC455_15841 197 4.09 Mlig455_045803, Mlig455_063182

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_045803 {REF} {Length: 763} {RNA1310_103953} {RNA815_42645}

Mlig455_063182 {REF} {Length: 773} {RNA1310_103953} {RNA815_42645}
35. MligTC455_11788 20 0.41 Mlig455_043729, Mlig455_043819, Mlig455_047429

Neo: -

Age: -

 ANGPTL1 0.951 - - - - 0.951 -

Mlig455_043729 {REF} {Length: 1137} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=144.4]} {Human: ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=131, Expect=2e-34]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=129, Expect=9e-34]; ENSG00000130812, ANGPTL6, angiopoietin like 6, [Score=127, Expect=5e-33]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=134, Expect=9e-36]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=131, Expect=8e-35]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=129, Expect=8e-34]} {Dmel: FBgn0003326, sca, scabrous, [Score=119, Expect=4e-30]} {Celegans: WBGene00017013, ensh-1, [Score=46.6, Expect=1e-05]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=110, Expect=4e-27]} {RNA1509_26827} {RNA1310_41424} {RNA815_48855}

Mlig455_043819 {REF} {Length: 1111} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=143.1]} {Human: ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=129, Expect=1e-33]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=127, Expect=4e-33]; ENSG00000130812, ANGPTL6, angiopoietin like 6, [Score=125, Expect=2e-32]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=132, Expect=5e-35]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=130, Expect=3e-34]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=127, Expect=4e-33]} {Dmel: FBgn0003326, sca, scabrous, [Score=117, Expect=2e-29]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=108, Expect=2e-26]} {RNA1509_26827} {RNA1310_41424} {RNA815_48855}

Mlig455_047429 {REF} {Length: 1072} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=143.1]} {Human: ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=129, Expect=1e-33]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=127, Expect=4e-33]; ENSG00000130812, ANGPTL6, angiopoietin like 6, [Score=125, Expect=2e-32]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=132, Expect=5e-35]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=130, Expect=3e-34]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=127, Expect=4e-33]} {Dmel: FBgn0003326, sca, scabrous, [Score=117, Expect=2e-29]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=108, Expect=2e-26]} {RNA1509_26827} {RNA1310_41424} {RNA815_48855}
36. MligTC455_13626 11 0.24 Mlig455_064998

Neo: -

Age: -

 SSTR5 0.951 - - - - 0.951 - Mlig455_064998 {REF} {Length: 2126} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=63.1]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=61.2]} {Human: ENSG00000162009, SSTR5, somatostatin receptor 5, [Score=56.2, Expect=7e-08]} {Mouse: ENSMUSG00000038760, Trhr, thyrotropin releasing hormone receptor, [Score=52.8, Expect=6e-07]} {Dmel: FBgn0035385, FMRFaR, FMRFamide Receptor, [Score=78.2, Expect=6e-15]} {Celegans: WBGene00019496, frpr-14, FMRFamide Peptide Receptor family, [Score=65.5, Expect=2e-11]} {Smed: dd_Smed_v6_37609_0_1, dd_Smed_v6_37609_0_1, [Score=216, Expect=1e-65]} {RNA1310_73991}
37. MligTC455_16481 2 0.04 Mlig455_021672

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_021672 {REF} {Length: 908} {Pfam: Major Facilitator Superfamily [PF07690.18, score=23.8]} {Mouse: ENSMUSG00000025161, Slc16a3, solute carrier family 16 (monocarboxylic acid transporters), member 3, [Score=57.8, Expect=6e-09]} {Dmel: FBgn0035173, CG13907, [Score=102, Expect=5e-24]} {Celegans: WBGene00003986, mct-4, MonoCarboxylate Transporter family, [Score=112, Expect=2e-27]} {Smed: dd_Smed_v6_10683_0_1, dd_Smed_v6_10683_0_1, [Score=72.0, Expect=6e-14]} {RNA1509_42097} {RNA1310_25416} {RNA815_9650}
38. MligTC455_09332 17 0.35 Mlig455_054514, Mlig455_055433

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_054514 {REF} {Length: 101} {NoTransDecoderORF}

Mlig455_055433 {REF} {Length: 225} {NoTransDecoderORF}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA