M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09339

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09339 17 0.36 Mlig455_033406

Neo: -

Age: Down-Up-Down

 Mlig455_033406 {REF} {Length: 1014} {RNA1509_14363} {RNA1310_45524.1} {RNA815_21772}

Cumulative graph for MligTC455_09339

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.431 0.73 0.99963 1.00000
RegionR2 -1.857 0.73 0.99793 1.00000
RegionR3 0.57 0.73 0.72383 1.00000
RegionR4 5.765 0.73 0.01135 0.06719
RegionR5 1.824 0.73 0.13349 0.37273
RegionR6 -1.087 0.73 0.98746 1.00000
RegionR7 -3.335 0.73 0.99980 1.00000
RegionR8 -3.312 0.73 0.99968 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.828 0.73 0.99956 1.00000
RegenerationR2 -1.736 0.73 0.19582 0.64023
RegenerationR3 -2.228 0.73 0.07891 0.46302
RegenerationR4 -3.378 0.73 0.03575 0.30569
RegenerationR5 -0.664 0.73 0.27435 0.70442
RegenerationR6 -2.339 0.73 0.28005 0.62954
RegenerationBL 0.225 0.73 0.99985 1.00000
RegenerationTP 0.828 0.73 0.80898 1.00000


Genes with expression patterns similar to MligTC455_09339

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09339 17 0.36 Mlig455_033406

Neo: -

Age: Down-Up-Down

 2 - - 1.000 - - 1.000 Mlig455_033406 {REF} {Length: 1014} {RNA1509_14363} {RNA1310_45524.1} {RNA815_21772}
2. MligTC455_09291 59 1.22 Mlig455_057548

Neo: -

Age: -

 1.726 - - 0.956 - - 0.770 Mlig455_057548 {REF} {Length: 1906} {Pfam: Universal stress protein family [PF00582.28, score=98.0]} {Smed: dd_Smed_v6_402_1_1, dd_Smed_v6_402_1_1, [Score=119, Expect=2e-34]} {RNA1509_38417} {RNA1310_81147} {RNA815_23823}
3. MligTC455_45876 77 1.59 Mlig455_017599, Mlig455_058883

Neo: -

Age: -

 0.995 - - 0.995 - - -

Mlig455_017599 {REF} {Length: 3586} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=27.3]} {Celegans: WBGene00019444, frpr-11, FMRFamide Peptide Receptor family, [Score=63.5, Expect=4e-11]} {RNA1310_90357}

Mlig455_058883 {REF} {Length: 2226} {RNA1310_90357}
4. MligTC455_28598 102 2.13 Mlig455_057552

Neo: -

Age: -

 0.992 - - 0.992 - - - Mlig455_057552 {REF} {Length: 3851} {TRANSSPLICED} {RNA1509_60109} {RNA1310_21727} {RNA815_11299}
5. MligTC455_06714 20 0.41 Mlig455_058305

Neo: -

Age: -

 0.991 - - 0.991 - - - Mlig455_058305 {REF} {Length: 391} {NoTransDecoderORF}
6. MligTC455_13557 20 0.43 Mlig455_020342, Mlig455_041283

Neo: -

Age: -

 ASIC1 0.991 - - 0.991 - - -

Mlig455_020342 {REF} {Length: 4002} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=135.3]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=67.4, Expect=2e-11]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=59.3, Expect=4e-09]} {Celegans: WBGene00003174, mec-10, Degenerin mec-10, [Score=65.1, Expect=3e-11]} {Smed: dd_Smed_v6_12037_0_1, dd_Smed_v6_12037_0_1, [Score=72.4, Expect=1e-13]} {RNA1509_33503} {RNA1310_41267.1} {RNA815_38083}

Mlig455_041283 {REF} {Length: 3377} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=207.2]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=67.4, Expect=4e-11]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=60.1, Expect=7e-09]} {Celegans: WBGene00003174, mec-10, Degenerin mec-10, [Score=66.2, Expect=5e-11]} {Smed: dd_Smed_v6_12037_0_1, dd_Smed_v6_12037_0_1, [Score=112, Expect=8e-26]} {RNA1509_33503} {RNA1310_18874} {RNA815_38083}
7. MligTC455_34503 27 0.57 Mlig455_024885

Neo: -

Age: -

 0.99 - - 0.990 - - - Mlig455_024885 {REF} {Length: 1211} {RNA1310_48713} {RNA815_64021}
8. MligTC455_10000 22 0.45 Mlig455_018215, Mlig455_018222, Mlig455_024893

Neo: -

Age: -

 NYNRIN 0.989 - - 0.989 - - -

Mlig455_018215 {REF} {Length: 1346} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=50.6]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=115, Expect=9e-28]} {RNA1509_37150} {RNA1310_27350} {RNA815_53271}

Mlig455_018222 {REF} {Length: 2972} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=111.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=93.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=78.7]; Integrase zinc binding domain [PF17921.3, score=48.7]; Integrase core domain [PF00665.28, score=44.0]; H2C2 zinc finger [PF09337.12, score=18.8]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=67.0, Expect=2e-10]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=60.8, Expect=9e-09]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=333, Expect=2e-98]} {RNA1509_24311} {RNA1310_27350} {RNA815_49943}

Mlig455_024893 {REF} {Length: 1453} {Smed: dd_Smed_v6_15720_0_1, dd_Smed_v6_15720_0_1, [Score=44.7, Expect=1e-06]} {RNA1310_25709} {RNA815_53271}
9. MligTC455_20041 51 1.06 Mlig455_040193

Neo: -

Age: -

 0.989 - - 0.989 - - - Mlig455_040193 {REF} {Length: 2188} {NoTransDecoderORF} {RNA1509_59933} {RNA1310_67825, RNA1509_59933} {RNA1509_59933, RNA815_42094}
10. MligTC455_37789 16 0.34 Mlig455_002723

Neo: -

Age: -

 0.989 - - 0.989 - - - Mlig455_002723 {REF} {Length: 349} {NoTransDecoderORF} {RNA1310_134759}
11. MligTC455_30786 16 0.34 Mlig455_010220

Neo: -

Age: Up-Down-Down

 0.987 - - 0.987 - - - Mlig455_010220 {REF} {Length: 3201} {TRANSSPLICED} {RNA1509_34939} {RNA1310_613.1} {RNA815_8156}
12. MligTC455_27888 146 3.05 Mlig455_028621, Mlig455_028645

Neo: -

Age: Down-Up-Up

Region-enriched R2: 3.461/0.03584

 0.983 - - 0.983 - - -

Mlig455_028621 {REF} {Length: 1647} {Pfam: AP-5 complex subunit sigma-1 [PF15001.8, score=40.8]} {RNA1509_48400} {RNA1310_26125} {RNA815_7192}

Mlig455_028645 {REF} {Length: 1841} {TRANSSPLICED} {Pfam: AP-5 complex subunit sigma-1 [PF15001.8, score=43.8]} {RNA1509_48400} {RNA1310_26125, RNA1509_48400} {RNA1509_48400, RNA815_7192}
13. MligTC455_25710 16 0.33 Mlig455_067581

Neo: -

Age: Down-Up-Down

 CSTB 0.981 - - 0.981 - - - Mlig455_067581 {REF} {Length: 1382} {TRANSSPLICED} {Pfam: Cystatin domain [PF00031.23, score=22.0]} {Human: ENSG00000160213, CSTB, cystatin B, [Score=62.8, Expect=4e-14]} {Mouse: ENSMUSG00000005054, Cstb, cystatin B, [Score=55.8, Expect=1e-11]} {Smed: dd_Smed_v6_423_0_1, dd_Smed_v6_423_0_1, [Score=69.7, Expect=5e-17]} {RNA1509_48375} {RNA1310_25872} {RNA815_28693}
14. MligTC455_26427 15 0.31 Mlig455_054140

Neo: -

Age: logFC(26M/2M)=-1.151

 TRPM1 0.977 - - 0.977 - - - Mlig455_054140 {REF} {Length: 5171} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=79.8]; Ankyrin repeats (3 copies) [PF12796.9, score=77.6]; Ankyrin repeats (many copies) [PF13857.8, score=40.4]; Ankyrin repeat [PF00023.32, score=38.8]; Ankyrin repeat [PF13606.8, score=38.6]} {Human: ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=57.0, Expect=3e-07]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=57.0, Expect=3e-07]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=57.8, Expect=1e-07]; ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=56.6, Expect=3e-07]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=57.0, Expect=1e-07]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=61.2, Expect=6e-09]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=94.4, Expect=3e-19]} {RNA1509_29189} {RNA1310_1181, RNA1509_29189} {RNA1509_29189, RNA815_1111.1}
15. MligTC455_19470 80 1.66 Mlig455_002707

Neo: -

Age: -

 0.975 - - 0.975 - - - Mlig455_002707 {REF} {Length: 260} {NoTransDecoderORF} {RNA1509_46200} {RNA1310_613.1} {RNA815_5431}
16. MligTC455_01405 72 1.51 Mlig455_040777

Neo: -

Age: -

 0.974 - - 0.974 - - - Mlig455_040777 {REF} {Length: 274} {NoTransDecoderORF} {RNA1509_34939} {RNA1310_613.1} {RNA815_5431}
17. MligTC455_10079 41 0.86 Mlig455_005692

Neo: -

Age: -

 0.969 - - 0.969 - - - Mlig455_005692 {REF} {Length: 638}
18. MligTC455_50439 22 0.46 Mlig455_046910

Neo: -

Age: -

 0.968 - - 0.968 - - - Mlig455_046910 {REF} {Length: 564} {Pfam: Putative zinc-RING and/or ribbon [PF13901.8, score=23.6]} {RNA1310_27229} {RNA815_30609}
19. MligTC455_27231 12 0.25 Mlig455_013442

Neo: -

Age: -

 SSTR4 0.965 - - 0.965 - - - Mlig455_013442 {REF} {Length: 1942} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=70.6]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=25.7]} {Human: ENSG00000132671, SSTR4, somatostatin receptor 4, [Score=63.2, Expect=4e-10]} {Mouse: ENSMUSG00000037014, Sstr4, somatostatin receptor 4, [Score=72.8, Expect=2e-13]} {Dmel: FBgn0039396, CCAP-R, Crustacean cardioactive peptide receptor, [Score=60.5, Expect=2e-09]} {Celegans: WBGene00009619, npr-6, NeuroPeptide Receptor family, [Score=50.8, Expect=1e-06]} {Smed: dd_Smed_v6_3522_0_1, dd_Smed_v6_3522_0_1, [Score=123, Expect=1e-31]} {RNA1310_145931}
20. MligTC455_16120 35 0.74 Mlig455_035494

Neo: -

Age: -

 0.964 - - 0.964 - - - Mlig455_035494 {REF} {Length: 2727} {RNA1509_19608} {RNA1310_148239} {RNA815_57063}
21. MligTC455_25953 61 1.27 Mlig455_009250, Mlig455_037047

Neo: -

Age: Down-Up-Down

 0.964 - - 0.964 - - -

Mlig455_009250 {REF} {Length: 3181} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=109.0]} {Smed: dd_Smed_v6_22533_0_1, dd_Smed_v6_22533_0_1, [Score=94.4, Expect=2e-20]} {RNA1509_31312} {RNA1310_16385} {RNA815_10372}

Mlig455_037047 {REF} {Length: 3284} {TRANSSPLICED} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=109.0]} {Smed: dd_Smed_v6_22533_0_1, dd_Smed_v6_22533_0_1, [Score=94.4, Expect=2e-20]} {RNA1509_31312} {RNA1310_16385} {RNA815_10372}
22. MligTC455_01710 41 0.85 Mlig455_013827

Neo: -

Age: -

 0.961 - - 0.961 - - - Mlig455_013827 {REF} {Length: 2546} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=29.2]} {RNA1310_100507} {RNA815_49026}
23. MligTC455_17533 156 3.25 Mlig455_018291

Neo: -

Age: -

 0.961 - - 0.961 - - - Mlig455_018291 {REF} {Length: 1866} {TRANSSPLICED} {RNA1509_48476} {RNA1310_24654.1} {RNA815_19410}
24. MligTC455_34853 23 0.47 Mlig455_045034

Neo: -

Age: -

 0.961 - - 0.961 - - - Mlig455_045034 {REF} {Length: 2444} {RNA1310_85929} {RNA815_43650}
25. MligTC455_38652 14 0.28 Mlig455_053085

Neo: -

Age: logFC(26M/2M)=3.457

 0.961 - - 0.961 - - - Mlig455_053085 {REF} {Length: 1326} {RNA1310_36111} {RNA815_20767}
26. MligTC455_50875 99 2.05 Mlig455_066419

Neo: -

Age: -

 0.961 - - 0.961 - - - Mlig455_066419 {REF} {Length: 1122} {NoTransDecoderORF} {RNA1509_21226} {RNA1310_71629} {RNA815_14011}
27. MligTC455_09310 104 2.18 Mlig455_013222

Neo: -

Age: -

 NCOR1 0.96 - - 0.960 - - - Mlig455_013222 {REF} {Length: 5322} {TRANSSPLICED} {Human: ENSG00000141027, NCOR1, nuclear receptor corepressor 1, [RH, Score=213, Expect=5e-55]; ENSG00000196498, NCOR2, nuclear receptor corepressor 2, [RH, Score=203, Expect=7e-52]} {Mouse: ENSMUSG00000018501, Ncor1, nuclear receptor co-repressor 1, [RH, Score=213, Expect=5e-55]} {Dmel: FBgn0265523, Smr, Smrter, [RH, Score=220, Expect=2e-57]} {Smed: dd_Smed_v6_7709_0_1, dd_Smed_v6_7709_0_1, [RH, Score=210, Expect=7e-55]} {RNA1509_5304} {RNA1310_3560} {RNA815_6348}
28. MligTC455_34205 6 0.12 Mlig455_028304

Neo: -

Age: Up-Down-Up

 0.96 - - 0.960 - - - Mlig455_028304 {REF} {Length: 2037} {RNA1509_34951} {RNA1310_12535} {RNA815_16231}
29. MligTC455_51254 45 0.94 Mlig455_062218

Neo: -

Age: -

 0.96 - - 0.960 - - - Mlig455_062218 {REF} {Length: 1157} {NoTransDecoderORF}
30. MligTC455_11632 18 0.38 Mlig455_064774

Neo: -

Age: -

 CFAP126 0.959 - - 0.959 - - - Mlig455_064774 {REF} {Length: 2533} {Human: ENSG00000188931, CFAP126, cilia and flagella associated protein 126, [Score=59.7, Expect=5e-10]} {Mouse: ENSMUSG00000026649, Cfap126, cilia and flagella associated protein 126, [Score=63.2, Expect=3e-11]} {RNA1310_44557.2} {RNA815_31853}
31. MligTC455_37050 21 0.43 Mlig455_058277, Mlig455_070789

Neo: -

Age: -

 0.958 - - 0.958 - - -

Mlig455_058277 {REF} {Length: 1417} {RNA1509_52793} {RNA1310_10196} {RNA815_19033}

Mlig455_070789 {REF} {Length: 1065} {RNA1509_52793} {RNA1310_10196} {RNA815_19033}
32. MligTC455_12100 95 1.97 Mlig455_029365

Neo: -

Age: Down-Up-Down

Region-enriched R3: 3.875/0.00267

 0.957 - - 0.957 - - - Mlig455_029365 {REF} {Length: 1265} {RNA1509_49846} {RNA1310_39189, RNA1509_49846} {RNA1509_49846, RNA815_32261}
33. MligTC455_16575 52 1.07 Mlig455_005832

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_005832 {REF} {Length: 1785} {TRANSSPLICED} {RNA1509_56064} {RNA1310_27244} {RNA815_26294}
34. MligTC455_16995 51 1.06 Mlig455_056516

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.868

 ANKRD52 0.955 - - 0.955 - - - Mlig455_056516 {REF} {Length: 2515} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=148.3]; Ankyrin repeat [PF00023.32, score=129.9]; Ankyrin repeats (many copies) [PF13637.8, score=119.4]; Ankyrin repeat [PF13606.8, score=106.0]; Ankyrin repeats (many copies) [PF13857.8, score=98.6]} {Human: ENSG00000139645, ANKRD52, ankyrin repeat domain 52, [Score=87.8, Expect=2e-17]} {Mouse: ENSMUSG00000014498, Ankrd52, ankyrin repeat domain 52, [Score=87.0, Expect=2e-17]} {Dmel: FBgn0031675, CG9121, [Score=76.3, Expect=2e-14]} {Celegans: WBGene00007801, trpa-1, Transient receptor potential cation channel subfamily A member 1 homolog, [Score=69.3, Expect=4e-12]} {Smed: dd_Smed_v6_1704_0_1, dd_Smed_v6_1704_0_1, [Score=80.9, Expect=7e-16]} {RNA1509_32886} {RNA1310_5973} {RNA815_9930}
35. MligTC455_13740 11 0.23 Mlig455_003266

Neo: -

Age: Down-Down-Up

 GLUL 0.954 - - 0.954 - - - Mlig455_003266 {REF} {Length: 2636} {Pfam: Glutamine synthetase, beta-Grasp domain [PF03951.21, score=49.3]; Glutamine synthetase, catalytic domain [PF00120.26, score=46.2]} {Human: ENSG00000135821, GLUL, glutamate-ammonia ligase, [RH, Score=520, Expect=0.0]} {Mouse: ENSMUSG00000026473, Glul, glutamate-ammonia ligase (glutamine synthetase), [RH, Score=523, Expect=0.0]} {Dmel: FBgn0001145, Gs2, Glutamine synthetase 2, [RH, Score=530, Expect=0.0]} {Celegans: WBGene00001604, gln-3, Glutamine synthetase, [RH, Score=531, Expect=0.0]} {Smed: dd_Smed_v6_646_0_1, dd_Smed_v6_646_0_1, [RH, Score=574, Expect=0.0]} {RNA1509_3029, RNA1509_56096} {RNA1310_32301, RNA1509_56096}
36. MligTC455_56421 59 1.23 Mlig455_066824

Neo: -

Age: -

 0.954 - - 0.954 - - - Mlig455_066824 {REF} {Length: 413} {RNA1509_38728} {RNA1310_9789} {RNA815_21216}
37. MligTC455_01343 92 1.93 Mlig455_010560, Mlig455_010561

Neo: -

Age: -

 0.953 - - 0.953 - - -

Mlig455_010560 {REF} {Length: 293} {Celegans: WBGene00044074, mltn-5, MLt-TeN (Mlt-10) related, [Score=56.6, Expect=9e-11]} {RNA1509_31312} {RNA1310_42761} {RNA815_54768}

Mlig455_010561 {REF} {Length: 869} {Celegans: WBGene00015646, mlt-10, [Score=48.9, Expect=1e-08]} {RNA1509_31312} {RNA1310_119354} {RNA815_54768}
38. MligTC455_29388 33 0.69 Mlig455_061684

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_061684 {REF} {Length: 1668} {RNA1509_21350} {RNA1310_72988.1} {RNA815_18625}
39. MligTC455_53361 98 2.05 Mlig455_042366

Neo: Int S/G2/M

Age: Up-Down-Up, logFC(26M/2M)=0.875

 0.953 - - 0.953 - - - Mlig455_042366 {REF} {Length: 1614} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=27.3]; Acetyl-coA carboxylase zinc finger domain [PF17848.3, score=22.3]} {RNA1509_35522} {RNA1310_6611} {RNA815_4725}
40. MligTC455_48104 65 1.36 Mlig455_005849

Neo: -

Age: -

 0.952 - - 0.952 - - - Mlig455_005849 {REF} {Length: 754} {NoTransDecoderORF} {RNA1310_91306} {RNA815_50835}
41. MligTC455_13995 137 2.85 Mlig455_025535, Mlig455_025553

Neo: -

Age: -

 0.951 - - 0.951 - - -

Mlig455_025535 {REF} {Length: 677} {NoTransDecoderORF} {RNA1509_3660} {RNA1310_50803} {RNA815_4302}

Mlig455_025553 {REF} {Length: 1430} {RNA1509_3660} {RNA1310_50803} {RNA815_4302}
42. MligTC455_38859 28 0.59 Mlig455_071137

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_071137 {REF} {Length: 409} {NoTransDecoderORF} {RNA1509_22707} {RNA1310_90313} {RNA815_24119.1}
43. MligTC455_12245 57 1.19 Mlig455_022843

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_022843 {REF} {Length: 675} {NoTransDecoderORF}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA