M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53361

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53361 98 2.05 Mlig455_042366

Neo: Int S/G2/M

Age: Up-Down-Up, logFC(26M/2M)=0.875

 Mlig455_042366 {REF} {Length: 1614} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=27.3]; Acetyl-coA carboxylase zinc finger domain [PF17848.3, score=22.3]} {RNA1509_35522} {RNA1310_6611} {RNA815_4725}

Cumulative graph for MligTC455_53361

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.585 1.842 0.99965 1.00000
RegionR2 2.655 1.842 0.08277 0.35273
RegionR3 2.454 1.842 0.10458 0.56582
RegionR4 1.209 1.842 0.28278 0.59120
RegionR5 -0.144 1.842 0.99965 1.00000
RegionR6 0.077 1.842 0.60377 1.00000
RegionR7 -2.045 1.842 0.99970 1.00000
RegionR8 -1.62 1.842 0.99966 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.13 1.842 0.24751 0.96633
RegenerationR2 0.063 1.842 0.99141 1.00000
RegenerationR3 0.732 1.842 0.47657 0.84763
RegenerationR4 1.1 1.842 0.25965 0.70783
RegenerationR5 3.237 1.842 0.00819 0.16410
RegenerationR6 3.345 1.842 0.01046 0.12643
RegenerationBL 4.422 1.842 0.01698 0.13883
RegenerationTP 4.051 1.842 0.11505 0.51954


Genes with expression patterns similar to MligTC455_53361

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53361 98 2.05 Mlig455_042366

Neo: Int S/G2/M

Age: Up-Down-Up, logFC(26M/2M)=0.875

 3 - - 1.000 1.000 1.000 - Mlig455_042366 {REF} {Length: 1614} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=27.3]; Acetyl-coA carboxylase zinc finger domain [PF17848.3, score=22.3]} {RNA1509_35522} {RNA1310_6611} {RNA815_4725}
2. MligTC455_19470 80 1.66 Mlig455_002707

Neo: -

Age: -

 0.983 - - 0.983 - - - Mlig455_002707 {REF} {Length: 260} {NoTransDecoderORF} {RNA1509_46200} {RNA1310_613.1} {RNA815_5431}
3. MligTC455_01405 72 1.51 Mlig455_040777

Neo: -

Age: -

 0.982 - - 0.982 - - - Mlig455_040777 {REF} {Length: 274} {NoTransDecoderORF} {RNA1509_34939} {RNA1310_613.1} {RNA815_5431}
4. MligTC455_12245 57 1.19 Mlig455_022843

Neo: -

Age: -

 0.973 - - 0.973 - - - Mlig455_022843 {REF} {Length: 675} {NoTransDecoderORF}
5. MligTC455_48104 65 1.36 Mlig455_005849

Neo: -

Age: -

 0.97 - - 0.970 - - - Mlig455_005849 {REF} {Length: 754} {NoTransDecoderORF} {RNA1310_91306} {RNA815_50835}
6. MligTC455_10079 41 0.86 Mlig455_005692

Neo: -

Age: -

 0.967 - - 0.967 - - - Mlig455_005692 {REF} {Length: 638}
7. MligTC455_34503 27 0.57 Mlig455_024885

Neo: -

Age: -

 0.967 - - 0.967 - - - Mlig455_024885 {REF} {Length: 1211} {RNA1310_48713} {RNA815_64021}
8. MligTC455_32568 159 3.3 Mlig455_004414, Mlig455_037235, Mlig455_037247

Neo: -

Age: Up-Down-Up

 IRAK4, TESK2 0.961 - - 0.961 - - -

Mlig455_004414 {REF} {Length: 5411} {Pfam: Protein kinase domain [PF00069.27, score=130.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=108.2]; ABC1 atypical kinase-like domain [PF03109.18, score=23.6]} {Human: ENSG00000198001, IRAK4, interleukin 1 receptor associated kinase 4, [Score=76.3, Expect=8e-14]} {Mouse: ENSMUSG00000059883, Irak4, interleukin-1 receptor-associated kinase 4, [Score=80.9, Expect=2e-15]} {Dmel: FBgn0010441, pll, pelle, [Score=77.0, Expect=2e-14]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [Score=60.5, Expect=3e-09]} {Smed: dd_Smed_v6_9065_0_1, dd_Smed_v6_9065_0_1, [Score=68.2, Expect=3e-12]} {RNA1509_59099} {RNA1310_25517} {RNA815_8731.1}

Mlig455_037235 {REF} {Length: 3581} {Pfam: Protein kinase domain [PF00069.27, score=93.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=83.4]; ABC1 atypical kinase-like domain [PF03109.18, score=23.9]} {Human: ENSG00000070759, TESK2, testis associated actin remodelling kinase 2, [Score=56.2, Expect=1e-07]; ENSG00000285379, RIPK3, receptor interacting serine/threonine kinase 3, [Score=53.5, Expect=1e-06]; ENSG00000129465, RIPK3, receptor interacting serine/threonine kinase 3, [Score=53.5, Expect=1e-06]} {Mouse: ENSMUSG00000059883, Irak4, interleukin-1 receptor-associated kinase 4, [Score=80.1, Expect=2e-15]} {Dmel: FBgn0024227, aurB, aurora B, [Score=52.4, Expect=7e-07]} {Celegans: WBGene00017381, svh-4, Discoidin domain-containing receptor tyrosine kinase B, [Score=55.1, Expect=1e-07]} {Smed: dd_Smed_v6_9065_0_1, dd_Smed_v6_9065_0_1, [Score=67.0, Expect=6e-12]} {RNA1509_59099} {RNA1310_32401} {RNA815_8731.3}

Mlig455_037247 {REF} {Length: 3340} {Pfam: Protein kinase domain [PF00069.27, score=130.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=108.2]; ABC1 atypical kinase-like domain [PF03109.18, score=23.6]} {Human: ENSG00000198001, IRAK4, interleukin 1 receptor associated kinase 4, [Score=76.3, Expect=8e-14]} {Mouse: ENSMUSG00000059883, Irak4, interleukin-1 receptor-associated kinase 4, [Score=80.9, Expect=2e-15]} {Dmel: FBgn0010441, pll, pelle, [Score=77.0, Expect=2e-14]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [Score=60.5, Expect=3e-09]} {Smed: dd_Smed_v6_9065_0_1, dd_Smed_v6_9065_0_1, [Score=68.2, Expect=3e-12]} {RNA1509_59099} {RNA1310_25517} {RNA815_24983}
9. MligTC455_27888 146 3.05 Mlig455_028621, Mlig455_028645

Neo: -

Age: Down-Up-Up

Region-enriched R2: 3.461/0.03584

 0.959 - - 0.959 - - -

Mlig455_028621 {REF} {Length: 1647} {Pfam: AP-5 complex subunit sigma-1 [PF15001.8, score=40.8]} {RNA1509_48400} {RNA1310_26125} {RNA815_7192}

Mlig455_028645 {REF} {Length: 1841} {TRANSSPLICED} {Pfam: AP-5 complex subunit sigma-1 [PF15001.8, score=43.8]} {RNA1509_48400} {RNA1310_26125, RNA1509_48400} {RNA1509_48400, RNA815_7192}
10. MligTC455_37050 21 0.43 Mlig455_058277, Mlig455_070789

Neo: -

Age: -

 0.958 - - 0.958 - - -

Mlig455_058277 {REF} {Length: 1417} {RNA1509_52793} {RNA1310_10196} {RNA815_19033}

Mlig455_070789 {REF} {Length: 1065} {RNA1509_52793} {RNA1310_10196} {RNA815_19033}
11. MligTC455_09291 59 1.22 Mlig455_057548

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_057548 {REF} {Length: 1906} {Pfam: Universal stress protein family [PF00582.28, score=98.0]} {Smed: dd_Smed_v6_402_1_1, dd_Smed_v6_402_1_1, [Score=119, Expect=2e-34]} {RNA1509_38417} {RNA1310_81147} {RNA815_23823}
12. MligTC455_19937 67 1.4 Mlig455_048004

Neo: -

Age: Down-Up-Down

Region-enriched R4: 5.334/0.01237

 NKX2-2 0.955 - - 0.955 - - - Mlig455_048004 {REF} {Length: 2666} {Pfam: Homeodomain [PF00046.31, score=72.6]} {Human: ENSG00000125820, NKX2-2, NK2 homeobox 2, [Score=119, Expect=2e-31]} {Mouse: ENSMUSG00000027434, Nkx2-2, NK2 homeobox 2, [Score=119, Expect=1e-31]} {Dmel: FBgn0261930, vnd, ventral nervous system defective, [Score=112, Expect=1e-27]} {Celegans: WBGene00000447, ceh-24, Homeobox protein ceh-24, [Score=95.5, Expect=9e-23]} {Smed: dd_Smed_v6_2716_0_3, dd_Smed_v6_2716_0_3, [Score=118, Expect=4e-30]} {RNA1509_27298} {RNA1310_16689.1} {RNA815_30453}
13. MligTC455_25710 16 0.33 Mlig455_067581

Neo: -

Age: Down-Up-Down

 CSTB 0.955 - - 0.955 - - - Mlig455_067581 {REF} {Length: 1382} {TRANSSPLICED} {Pfam: Cystatin domain [PF00031.23, score=22.0]} {Human: ENSG00000160213, CSTB, cystatin B, [Score=62.8, Expect=4e-14]} {Mouse: ENSMUSG00000005054, Cstb, cystatin B, [Score=55.8, Expect=1e-11]} {Smed: dd_Smed_v6_423_0_1, dd_Smed_v6_423_0_1, [Score=69.7, Expect=5e-17]} {RNA1509_48375} {RNA1310_25872} {RNA815_28693}
14. MligTC455_09339 17 0.36 Mlig455_033406

Neo: -

Age: Down-Up-Down

 0.953 - - 0.953 - - - Mlig455_033406 {REF} {Length: 1014} {RNA1509_14363} {RNA1310_45524.1} {RNA815_21772}
15. MligTC455_29734 257 5.35 Mlig455_028119

Neo: -

Age: -

 XDH 0.953 - - 0.953 - - - Mlig455_028119 {REF} {Length: 2100} {Pfam: Molybdopterin-binding domain of aldehyde dehydrogenase [PF02738.20, score=435.8]} {Human: ENSG00000158125, XDH, xanthine dehydrogenase, [Score=541, Expect=8e-179]} {Mouse: ENSMUSG00000024066, Xdh, xanthine dehydrogenase, [Score=514, Expect=1e-168]} {Dmel: FBgn0003308, ry, rosy, [Score=484, Expect=1e-157]} {Celegans: WBGene00010083, xhd-1, [Score=459, Expect=4e-148]} {RNA1509_5759} {RNA1310_1612.1} {RNA815_3017}
16. MligTC455_31321 143 2.98 Mlig455_051428

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_051428 {REF} {Length: 1426} {RNA1509_14413} {RNA1310_10720.1} {RNA815_3565}
17. MligTC455_50439 22 0.46 Mlig455_046910

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_046910 {REF} {Length: 564} {Pfam: Putative zinc-RING and/or ribbon [PF13901.8, score=23.6]} {RNA1310_27229} {RNA815_30609}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA