M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09440

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09440 24 0.50 Mlig455_006762

Neo: Int S/G2/M

Age: -

 Mlig455_006762 {REF} {Length: 2470} {RNA1310_84650}

Cumulative graph for MligTC455_09440

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.129 1.003 0.99994 1.00000
RegionR2 1.168 1.003 0.26157 0.64285
RegionR3 -0.502 1.003 0.99990 1.00000
RegionR4 0.798 1.003 0.99981 1.00000
RegionR5 -0.054 1.003 0.99987 1.00000
RegionR6 -0.927 1.003 0.99989 1.00000
RegionR7 -0.728 1.003 0.99992 1.00000
RegionR8 0.116 1.003 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.296 1.003 1.00000 1.00000
RegenerationR2 1.278 1.003 0.26772 0.71358
RegenerationR3 2.178 1.003 0.22687 0.66196
RegenerationR4 2.422 1.003 0.09470 0.47915
RegenerationR5 1.501 1.003 0.22132 0.65607
RegenerationR6 3.25 1.003 0.10654 0.40431
RegenerationBL 2.494 1.003 0.24985 0.60616
RegenerationTP 2.133 1.003 0.46927 0.88018


Genes with expression patterns similar to MligTC455_09440

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09440 24 0.5 Mlig455_006762

Neo: Int S/G2/M

Age: -

 2 - - - 1.000 1.000 - Mlig455_006762 {REF} {Length: 2470} {RNA1310_84650}
2. MligTC455_44325 26 0.53 Mlig455_030998

Neo: Irradiation

Age: -

 SYNCRIP 1.687 - - - 0.735 0.952 - Mlig455_030998 {REF} {Length: 4803} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=126.3]} {Human: ENSG00000135316, SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, [Score=246, Expect=3e-72]} {Mouse: ENSMUSG00000032423, Syncrip, synaptotagmin binding, cytoplasmic RNA interacting protein, [Score=246, Expect=3e-72]} {Dmel: FBgn0038826, Syp, Syncrip, [Score=243, Expect=2e-72]} {Celegans: WBGene00002000, hrp-2, HnRNP A1 homolog, [Score=239, Expect=5e-70]} {Smed: dd_Smed_v6_2228_0_1, dd_Smed_v6_2228_0_1, [Score=171, Expect=2e-45]} {RNA1509_16867, RNA1509_45274} {RNA1310_16158, RNA1509_45274} {RNA1509_45274, RNA815_17530}
3. MligTC455_33747 54 1.13 Mlig455_059482

Neo: -

Age: -

 GRIK2 0.987 - - - - 0.987 - Mlig455_059482 {REF} {Length: 4944} {Pfam: Ligand-gated ion channel [PF00060.28, score=159.4]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=111.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=82.7]; Receptor family ligand binding region [PF01094.30, score=23.2]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=392, Expect=5e-122]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=385, Expect=3e-119]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=385, Expect=8e-119]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=391, Expect=1e-121]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=387, Expect=9e-121]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=383, Expect=2e-118]} {Dmel: FBgn0039927, CG11155, [Score=373, Expect=6e-115]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=326, Expect=5e-98]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=455, Expect=2e-145]} {RNA1310_7590.1} {RNA815_26485}
4. MligTC455_30868 86 1.8 Mlig455_007682, Mlig455_020997

Neo: -

Age: -

 0.983 - - - - 0.983 -

Mlig455_007682 {REF} {Length: 3292} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=45.5]; Ankyrin repeat [PF13606.8, score=36.3]; Ankyrin repeat [PF00023.32, score=35.1]; Ankyrin repeats (many copies) [PF13637.8, score=26.8]; Ankyrin repeats (many copies) [PF13857.8, score=26.3]} {RNA1509_14810} {RNA1310_3488.1, RNA1509_14810} {RNA1509_14810, RNA815_6042.1}

Mlig455_020997 {REF} {Length: 4389} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=45.5]; Ankyrin repeat [PF13606.8, score=36.3]; Ankyrin repeat [PF00023.32, score=35.1]; Ankyrin repeats (many copies) [PF13637.8, score=26.8]; Ankyrin repeats (many copies) [PF13857.8, score=26.3]} {RNA1509_14810} {RNA1310_3488.1} {RNA815_6042.1}
5. MligTC455_13482 29 0.6 Mlig455_051983

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_051983 {REF} {Length: 562} {NoTransDecoderORF} {RNA1509_47691} {RNA1310_5733} {RNA815_48413}
6. MligTC455_31586 7 0.15 Mlig455_015306, Mlig455_024657, Mlig455_024660, Mlig455_048641, Mlig455_059721, Mlig455_068887

Neo: Int S/G2/M

Age: -

 ANGPT4, FCN1, TNXB 0.966 - - - - 0.966 -

Mlig455_015306 {REF} {Length: 1188} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=176.6]} {Human: ENSG00000229353, TNXB, tenascin XB, [RH, Score=135, Expect=5e-35]; ENSG00000236236, TNXB, tenascin XB, [RH, Score=134, Expect=1e-34]; ENSG00000168477, TNXB, tenascin XB, [RH, Score=134, Expect=1e-34]} {Mouse: ENSMUSG00000033327, Tnxb, tenascin XB, [Score=132, Expect=5e-34]; ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=129, Expect=6e-34]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=127, Expect=2e-33]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=126, Expect=7e-33]} {Dmel: FBgn0033312, CG8642, [Score=110, Expect=2e-27]} {Celegans: WBGene00020516, T15B7.1, [Score=60.1, Expect=4e-10]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=112, Expect=8e-28]} {RNA1310_44670.1} {RNA815_23388}

Mlig455_024657 {REF} {Length: 866} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=173.9]} {Human: ENSG00000085265, FCN1, ficolin 1, [RH, Score=147, Expect=2e-41]} {Mouse: ENSMUSG00000026938, Fcna, ficolin A, [RH, Score=136, Expect=1e-37]} {Dmel: FBgn0087011, CG41520, [RH, Score=116, Expect=5e-29]} {Celegans: WBGene00017013, ensh-1, [Score=57.4, Expect=3e-09]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=106, Expect=1e-25]} {RNA1310_35640.2} {RNA815_23388}

Mlig455_024660 {REF} {Length: 1657} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=93.4]} {Human: ENSG00000101280, ANGPT4, angiopoietin 4, [Score=81.3, Expect=2e-17]; ENSG00000229353, TNXB, tenascin XB, [Score=78.2, Expect=3e-16]; ENSG00000168477, TNXB, tenascin XB, [Score=77.8, Expect=4e-16]; ENSG00000236236, TNXB, tenascin XB, [Score=77.8, Expect=4e-16]} {Mouse: ENSMUSG00000033327, Tnxb, tenascin XB, [Score=75.5, Expect=2e-15]; ENSMUSG00000033860, Fgg, fibrinogen gamma chain, [Score=73.9, Expect=5e-15]; ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=73.6, Expect=6e-15]; ENSMUSG00000026938, Fcna, ficolin A, [Score=72.4, Expect=1e-14]} {Dmel: FBgn0033312, CG8642, [Score=66.6, Expect=1e-12]} {RNA1509_16913} {RNA1310_74714} {RNA815_23388}

Mlig455_048641 {REF} {Length: 632} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=93.4]} {Human: ENSG00000101280, ANGPT4, angiopoietin 4, [Score=81.3, Expect=2e-17]; ENSG00000229353, TNXB, tenascin XB, [Score=78.2, Expect=3e-16]; ENSG00000236236, TNXB, tenascin XB, [Score=77.8, Expect=3e-16]; ENSG00000168477, TNXB, tenascin XB, [Score=77.8, Expect=4e-16]} {Mouse: ENSMUSG00000033327, Tnxb, tenascin XB, [Score=75.5, Expect=2e-15]; ENSMUSG00000033860, Fgg, fibrinogen gamma chain, [Score=73.6, Expect=5e-15]; ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=73.6, Expect=6e-15]; ENSMUSG00000026938, Fcna, ficolin A, [Score=72.0, Expect=1e-14]} {Dmel: FBgn0033312, CG8642, [Score=66.6, Expect=1e-12]} {RNA1310_74714} {RNA815_23388}

Mlig455_059721 {REF} {Length: 1062} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=173.2]} {Human: ENSG00000085265, FCN1, ficolin 1, [RH, Score=143, Expect=2e-39]} {Mouse: ENSMUSG00000026938, Fcna, ficolin A, [RH, Score=132, Expect=2e-35]} {Dmel: FBgn0087011, CG41520, [RH, Score=117, Expect=1e-28]} {Celegans: WBGene00017013, ensh-1, [Score=52.8, Expect=1e-07]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=107, Expect=1e-25]} {RNA1310_35640.2} {RNA815_23388}

Mlig455_068887 {REF} {Length: 1644} {RNA1509_7417} {RNA1310_35640.1} {RNA815_53151}
7. MligTC455_25585 186 3.88 Mlig455_018990, Mlig455_042225, Mlig455_042228, Mlig455_055712, Mlig455_055727

Neo: -

Age: -

 LRMP 0.963 - - - - 0.963 -

Mlig455_018990 {REF} {Length: 3869} {Pfam: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 [PF10473.11, score=22.5]} {RNA1509_19148} {RNA1310_16173} {RNA815_20593}

Mlig455_042225 {REF} {Length: 1434} {Pfam: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 [PF10473.11, score=25.8]} {RNA1310_113381}

Mlig455_042228 {REF} {Length: 2208} {Pfam: MRVI1 protein [PF05781.14, score=32.9]} {Human: ENSG00000118308, LRMP, lymphoid restricted membrane protein, [Score=47.8, Expect=1e-05]} {RNA1509_19148} {RNA1310_16173} {RNA815_20593}

Mlig455_055712 {REF} {Length: 3372} {Pfam: MRVI1 protein [PF05781.14, score=32.5]} {Mouse: ENSMUSG00000030263, Lrmp, lymphoid-restricted membrane protein, [RH, Score=52.0, Expect=2e-06]} {RNA1509_19148} {RNA1310_16173} {RNA815_20593}

Mlig455_055727 {REF} {Length: 1453} {RNA1509_19148} {RNA1310_16173} {RNA815_20593}
8. MligTC455_20815 11 0.23 Mlig455_026062

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_026062 {REF} {Length: 499} {NoTransDecoderORF} {RNA1509_46791} {RNA1310_10565.1} {RNA815_21345.1}
9. MligTC455_37994 20 0.42 Mlig455_035678, Mlig455_035987

Neo: -

Age: -

 PRR9 0.957 - - - - 0.957 -

Mlig455_035678 {REF} {Length: 2541} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=44.7, Expect=3e-06]} {RNA1310_15743} {RNA815_23851}

Mlig455_035987 {REF} {Length: 2396} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=46.2, Expect=9e-07]} {RNA1310_17667} {RNA815_53757}
10. MligTC455_09865 14 0.3 Mlig455_009335

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_009335 {REF} {Length: 206} {NoTransDecoderORF}
11. MligTC455_22085 22 0.46 Mlig455_015755

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_015755 {REF} {Length: 3621} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=157.6]; WSC domain [PF01822.21, score=25.4]; Kringle domain [PF00051.20, score=22.7]} {Celegans: WBGene00003168, mec-4, Degenerin mec-4, [Score=61.6, Expect=2e-09]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=64.3, Expect=3e-10]} {RNA1509_30712} {RNA1310_47107} {RNA815_27865}
12. MligTC455_09674 172 3.58 Mlig455_003939, Mlig455_003955

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_003939 {REF} {Length: 1666} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=51.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=30.9]} {RNA1310_24279} {RNA815_34991}

Mlig455_003955 {REF} {Length: 1792} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=51.1]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=30.9]} {RNA1310_24279} {RNA815_34991}
13. MligTC455_53149 35 0.73 Mlig455_028208

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_028208 {REF} {Length: 2344} {RNA1509_40765} {RNA1310_47463} {RNA815_27999}
14. MligTC455_19197 67 1.4 Mlig455_007034

Neo: -

Age: -

Region-enriched R4: 3.641/0.00186

 0.951 - - - - 0.951 - Mlig455_007034 {REF} {Length: 1592} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_59235} {RNA1310_17424.2} {RNA815_5050}
15. MligTC455_20531 109 2.28 Mlig455_017914

Neo: -

Age: Down-Up-Down

 CREBZF 0.951 - - - 0.951 - - Mlig455_017914 {REF} {Length: 3273} {TRANSSPLICED} {Pfam: Basic region leucine zipper [PF07716.17, score=20.1]} {Human: ENSG00000137504, CREBZF, CREB/ATF bZIP transcription factor, [RH, Score=48.5, Expect=1e-05]} {Mouse: ENSMUSG00000051451, Crebzf, CREB/ATF bZIP transcription factor, [RH, Score=52.4, Expect=4e-07]} {Celegans: WBGene00000793, crh-1, CREB Homolog; Cyclic AMP-response element binding protein 1 gamma 2, [Score=48.1, Expect=6e-06]} {RNA1509_18369, RNA1509_59355} {RNA1310_18734, RNA1509_18369, RNA1509_59355} {RNA1509_18369, RNA1509_59355, RNA815_17575}
16. MligTC455_30818 71 1.48 Mlig455_013032

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_013032 {REF} {Length: 1090} {TRANSSPLICED} {RNA1509_38085} {RNA1310_25316.2} {RNA815_12860}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA