M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09452

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09452 19 0.40 Mlig455_040643

Neo: -

Age: Down-Up-Down

 ANKRD28 Mlig455_040643 {REF} {Length: 4360} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=58.1]; Ankyrin repeat [PF13606.8, score=42.0]; Ankyrin repeat [PF00023.32, score=35.6]; Ankyrin repeats (many copies) [PF13637.8, score=30.8]; Ankyrin repeats (many copies) [PF13857.8, score=29.0]} {Human: ENSG00000206560, ANKRD28, ankyrin repeat domain 28, [Score=58.9, Expect=8e-09]} {Mouse: ENSMUSG00000014496, Ankrd28, ankyrin repeat domain 28, [Score=58.9, Expect=5e-09]; ENSMUSG00000078487, Ankrd65, ankyrin repeat domain 65, [Score=58.5, Expect=5e-09]} {Dmel: FBgn0041096, rols, rolling pebbles, [Score=63.5, Expect=1e-10]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=53.5, Expect=1e-07]} {RNA1509_42830} {RNA1310_48342, RNA1509_42830} {RNA1509_42830, RNA815_30933}

Cumulative graph for MligTC455_09452

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.365 1 0.99998 1.00000
RegionR2 -1.97 1 0.99974 1.00000
RegionR3 0.709 1 0.56321 1.00000
RegionR4 2.515 1 0.09476 0.29680
RegionR5 0.904 1 0.38921 0.74490
RegionR6 -2.369 1 0.99978 1.00000
RegionR7 -1.071 1 0.99973 1.00000
RegionR8 -1.083 1 0.99969 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.556 1 0.99994 1.00000
RegenerationR2 1.742 1 0.21303 0.66008
RegenerationR3 0.721 1 0.91178 1.00000
RegenerationR4 0.4 1 0.71156 0.95771
RegenerationR5 1.16 1 0.88184 1.00000
RegenerationR6 3.43 1 0.16076 0.48921
RegenerationBL -0.521 1 0.99994 1.00000
RegenerationTP -1.038 1 0.99990 1.00000


Genes with expression patterns similar to MligTC455_09452

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09452 19 0.4 Mlig455_040643

Neo: -

Age: Down-Up-Down

 ANKRD28 3 - - - 1.000 1.000 1.000 Mlig455_040643 {REF} {Length: 4360} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=58.1]; Ankyrin repeat [PF13606.8, score=42.0]; Ankyrin repeat [PF00023.32, score=35.6]; Ankyrin repeats (many copies) [PF13637.8, score=30.8]; Ankyrin repeats (many copies) [PF13857.8, score=29.0]} {Human: ENSG00000206560, ANKRD28, ankyrin repeat domain 28, [Score=58.9, Expect=8e-09]} {Mouse: ENSMUSG00000014496, Ankrd28, ankyrin repeat domain 28, [Score=58.9, Expect=5e-09]; ENSMUSG00000078487, Ankrd65, ankyrin repeat domain 65, [Score=58.5, Expect=5e-09]} {Dmel: FBgn0041096, rols, rolling pebbles, [Score=63.5, Expect=1e-10]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=53.5, Expect=1e-07]} {RNA1509_42830} {RNA1310_48342, RNA1509_42830} {RNA1509_42830, RNA815_30933}
2. MligTC455_48718 578 12.04 Mlig455_022104

Neo: -

Age: Down-Up-Down

 COA4 0.997 - - - 0.997 - - Mlig455_022104 {REF} {Length: 381} {TRANSSPLICED} {Pfam: CHCH domain [PF06747.15, score=23.1]} {Human: ENSG00000181924, COA4, cytochrome c oxidase assembly factor 4 homolog, [RH, Score=64.7, Expect=5e-15]} {Mouse: ENSMUSG00000044881, Coa4, cytochrome c oxidase assembly factor 4, [RH, Score=66.6, Expect=6e-16]} {Dmel: FBgn0265083, CG44194, [RH, Score=60.8, Expect=4e-14]} {Celegans: WBGene00011857, T20D3.3, [RH, Score=61.6, Expect=4e-14]} {Smed: dd_Smed_v6_4811_0_1, dd_Smed_v6_4811_0_1, [RH, Score=62.0, Expect=1e-14]} {RNA1509_14110} {RNA1310_61414} {RNA815_16665.2}
3. MligTC455_16791 105 2.19 Mlig455_033038

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.295

Region-specific R4: 6.512

Region-enriched R4: 4.372/0.00000

 0.984 - - - 0.984 - - Mlig455_033038 {REF} {Length: 3650} {RNA1509_3316, RNA1509_38593} {RNA1310_5937.1, RNA1509_38593} {RNA1509_38593, RNA815_2548.2}
4. MligTC455_20826 17 0.36 Mlig455_002403

Neo: Germline

Age: -

 0.978 - - - - 0.978 - Mlig455_002403 {REF} {Length: 4513} {Pfam: Glycosyltransferase family 92 [PF01697.29, score=125.3]; Glycosyl transferase family 2 [PF13704.8, score=28.2]} {Dmel: FBgn0032506, CG9395, [Score=114, Expect=1e-26]} {Celegans: WBGene00018809, F54D10.8, [RH, Score=63.2, Expect=2e-10]} {Smed: dd_Smed_v6_5401_0_1, dd_Smed_v6_5401_0_1, [Score=223, Expect=6e-68]} {RNA1509_29268} {RNA1310_12603} {RNA815_25457.1}
5. MligTC455_54225 2 0.05 Mlig455_049552

Neo: -

Age: -

 0.976 - - - - - 0.976 Mlig455_049552 {REF} {Length: 620} {NoTransDecoderORF} {RNA1310_19572}
6. MligTC455_49916 218 4.54 Mlig455_001262

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=1.123

 CA7 0.963 - - - 0.963 - - Mlig455_001262 {REF} {Length: 1518} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=269.6]} {Human: ENSG00000168748, CA7, carbonic anhydrase 7, [RH, Score=213, Expect=5e-68]} {Mouse: ENSMUSG00000031883, Car7, carbonic anhydrase 7, [RH, Score=219, Expect=2e-70]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [RH, Score=211, Expect=2e-67]} {Celegans: WBGene00000281, cah-3, Putative carbonic anhydrase 3, [RH, Score=144, Expect=6e-42]} {Smed: dd_Smed_v6_5784_0_1, dd_Smed_v6_5784_0_1, [RH, Score=200, Expect=2e-63]} {RNA1509_37659, RNA1509_47249} {RNA1310_24755, RNA1509_47249} {RNA1509_47249, RNA815_10527.1}
7. MligTC455_49917 225 4.68 Mlig455_034617

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.616

 CA7 0.963 - - - 0.963 - - Mlig455_034617 {REF} {Length: 1379} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=268.2]} {Human: ENSG00000168748, CA7, carbonic anhydrase 7, [Score=201, Expect=1e-63]} {Mouse: ENSMUSG00000031883, Car7, carbonic anhydrase 7, [Score=202, Expect=3e-64]; ENSMUSG00000027562, Car2, carbonic anhydrase 2, [Score=193, Expect=1e-60]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [RH, Score=204, Expect=9e-65]} {Celegans: WBGene00000281, cah-3, Putative carbonic anhydrase 3, [RH, Score=140, Expect=1e-40]} {Smed: dd_Smed_v6_5784_0_1, dd_Smed_v6_5784_0_1, [RH, Score=192, Expect=2e-60]} {RNA1509_47249} {RNA1310_24755} {RNA815_10527.1}
8. MligTC455_49408 17 0.36 Mlig455_063386

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_063386 {REF} {Length: 2333} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=40.2]} {Mouse: ENSMUSG00000037014, Sstr4, somatostatin receptor 4, [Score=53.5, Expect=2e-07]} {Dmel: FBgn0035385, FMRFaR, FMRFamide Receptor, [Score=58.9, Expect=3e-09]} {Smed: dd_Smed_v6_36108_0_1, dd_Smed_v6_36108_0_1, [RH, Score=86.3, Expect=6e-20]} {RNA1509_4998} {RNA1310_57149}
9. MligTC455_53893 11 0.22 Mlig455_049631

Neo: -

Age: logFC(26M/2M)=4.483

Region-enriched R4: 5.952/0.02240

 0.962 - - - 0.962 - - Mlig455_049631 {REF} {Length: 1950} {Pfam: Lectin C-type domain [PF00059.23, score=39.0]} {Mouse: ENSMUSG00000030149, Klrk1, killer cell lectin-like receptor subfamily K, member 1, [Score=47.4, Expect=1e-05]} {RNA1509_21708} {RNA1310_11823, RNA1509_21708} {RNA1509_21708, RNA815_25092.1}
10. MligTC455_13395 18 0.38 Mlig455_061750

Neo: -

Age: -

 QRFPR 0.961 - - - - - 0.961 Mlig455_061750 {REF} {Length: 1579} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=107.1]} {Human: ENSG00000186867, QRFPR, pyroglutamylated RFamide peptide receptor, [Score=99.8, Expect=2e-22]} {Mouse: ENSMUSG00000035528, Npffr2, neuropeptide FF receptor 2, [Score=92.8, Expect=2e-20]} {Dmel: FBgn0050106, CCHa1-R, CCHamide-1 receptor, [Score=78.6, Expect=1e-15]} {Celegans: WBGene00021983, npr-5, NeuroPeptide Receptor family, [Score=77.4, Expect=2e-15]} {Smed: dd_Smed_v6_14520_0_1, dd_Smed_v6_14520_0_1, [Score=73.9, Expect=2e-14]} {RNA1310_103173} {RNA815_39338}
11. MligTC455_25012 486 10.13 Mlig455_018568

Neo: -

Age: Down-Down-Up

 CYP3A43 0.961 - - - - 0.961 - Mlig455_018568 {REF} {Length: 2328} {Pfam: Cytochrome P450 [PF00067.24, score=321.6]} {Human: ENSG00000021461, CYP3A43, cytochrome P450 family 3 subfamily A member 43, [RH, Score=274, Expect=2e-85]} {Mouse: ENSMUSG00000029727, Cyp3a13, cytochrome P450, family 3, subfamily a, polypeptide 13, [Score=283, Expect=7e-89]; ENSMUSG00000056035, Cyp3a11, cytochrome P450, family 3, subfamily a, polypeptide 11, [Score=278, Expect=4e-87]; ENSMUSG00000038656, Cyp3a16, cytochrome P450, family 3, subfamily a, polypeptide 16, [Score=273, Expect=4e-85]; ENSMUSG00000075552, Cyp3a41b, cytochrome P450, family 3, subfamily a, polypeptide 41B, [Score=271, Expect=2e-84]; ENSMUSG00000075551, Cyp3a41a, cytochrome P450, family 3, subfamily a, polypeptide 41A, [Score=271, Expect=2e-84]} {Dmel: FBgn0000473, Cyp6a2, Cytochrome P450-6a2, [RH, Score=239, Expect=3e-72]} {Celegans: WBGene00000372, cyp-13A7, Putative cytochrome P450 CYP13A7, [Score=194, Expect=2e-55]} {Smed: dd_Smed_v6_4319_0_1, dd_Smed_v6_4319_0_1, [Score=308, Expect=3e-99]} {RNA1509_19465} {RNA1310_10329.1, RNA1509_19465} {RNA1509_19465, RNA815_6310}
12. MligTC455_29690 6 0.12 Mlig455_038056

Neo: -

Age: -

 TANC2 0.961 - - - 0.961 - - Mlig455_038056 {REF} {Length: 4719} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=57.4]; Ankyrin repeats (many copies) [PF13637.8, score=56.9]; Ankyrin repeat [PF13606.8, score=44.8]; Mab-21 protein [PF03281.16, score=44.1]; Ankyrin repeats (many copies) [PF13857.8, score=38.6]; Ankyrin repeat [PF00023.32, score=35.0]} {Human: ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=72.8, Expect=3e-12]} {Mouse: ENSMUSG00000053580, Tanc2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=70.5, Expect=1e-11]} {Dmel: FBgn0041096, rols, rolling pebbles, [Score=84.7, Expect=3e-16]} {Celegans: WBGene00006490, kdin-1, KiDINs220 (Vertebrate scaffold protein) homolog, [Score=59.7, Expect=1e-08]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=60.8, Expect=4e-09]} {RNA1509_27730} {RNA1310_4721} {RNA815_5358.1}
13. MligTC455_23054 30 0.63 Mlig455_037125

Neo: -

Age: logFC(26M/2M)=0.361

Region-enriched R4: 4.587/0.03512

 SMYD2 0.96 - - - - 0.960 - Mlig455_037125 {REF} {Length: 3233} {TRANSSPLICED} {Pfam: SET domain [PF00856.30, score=63.8]; MYND finger [PF01753.20, score=20.3]} {Human: ENSG00000143499, SMYD2, SET and MYND domain containing 2, [Score=99.0, Expect=2e-21]} {Mouse: ENSMUSG00000018809, Smyd4, SET and MYND domain containing 4, [Score=107, Expect=8e-24]} {Dmel: FBgn0027495, Smyd4-4, SET and MYND domain containing, class 4, member 4, [RH, Score=145, Expect=1e-36]} {Smed: dd_Smed_v6_12412_0_2, dd_Smed_v6_12412_0_2, [RH, Score=209, Expect=4e-59]} {RNA1509_16110} {RNA1310_7690, RNA1509_16110} {RNA1509_16110, RNA815_25789}
14. MligTC455_11665 25 0.52 Mlig455_061444

Neo: -

Age: Up-Down-Up

 ANPEP 0.959 - - - 0.959 - - Mlig455_061444 {REF} {Length: 3401} {Pfam: ERAP1-like C-terminal domain [PF11838.10, score=265.3]; Peptidase family M1 domain [PF01433.22, score=253.0]; Peptidase M1 N-terminal domain [PF17900.3, score=136.0]; Protein of unknown function (DUF2808) [PF10989.10, score=18.7]} {Human: ENSG00000166825, ANPEP, alanyl aminopeptidase, membrane, [RH, Score=563, Expect=0.0]} {Mouse: ENSMUSG00000039062, Anpep, alanyl (membrane) aminopeptidase, [RH, Score=556, Expect=0.0]} {Dmel: FBgn0039640, CG14516, [RH, Score=537, Expect=3e-175]} {Celegans: WBGene00011587, T07F10.1, Aminopeptidase, [RH, Score=432, Expect=1e-135]} {Smed: dd_Smed_v6_6470_0_1, dd_Smed_v6_6470_0_1, [RH, Score=633, Expect=0.0]} {RNA1509_36730} {RNA1310_4130.1, RNA1509_36730} {RNA1509_36730, RNA815_6655}
15. MligTC455_45985 33 0.68 Mlig455_024368

Neo: -

Age: -

 CDC42SE2 0.957 - - - - 0.957 - Mlig455_024368 {REF} {Length: 4034} {TRANSSPLICED} {Pfam: P21-Rho-binding domain [PF00786.30, score=20.1]} {Human: ENSG00000158985, CDC42SE2, CDC42 small effector 2, [Score=42.7, Expect=1e-05]} {Mouse: ENSMUSG00000052298, Cdc42se2, CDC42 small effector 2, [Score=42.7, Expect=9e-06]; ENSMUSG00000046722, Cdc42se1, CDC42 small effector 1, [Score=42.4, Expect=1e-05]} {RNA1509_27868} {RNA1310_38537} {RNA815_37956}
16. MligTC455_39274 6 0.12 Mlig455_065105

Neo: -

Age: -

 0.952 - - - - - 0.952 Mlig455_065105 {REF} {Length: 1433} {RNA1310_84541}
17. MligTC455_15702 47 0.97 Mlig455_019200

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_019200 {REF} {Length: 4665} {RNA1509_57405} {RNA1310_50410}
18. MligTC455_20171 5 0.11 Mlig455_025085

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_025085 {REF} {Length: 908}
19. MligTC455_36103 133 2.77 Mlig455_049271

Neo: -

Age: -

 CRBN 0.95 - - - - 0.950 - Mlig455_049271 {REF} {Length: 1980} {TRANSSPLICED} {Pfam: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly [PF03226.16, score=32.4]} {Human: ENSG00000113851, CRBN, cereblon, [RH, Score=215, Expect=1e-63]} {Mouse: ENSMUSG00000005362, Crbn, cereblon, [RH, Score=211, Expect=3e-62]} {Dmel: FBgn0037780, ohgt, ohgata, [RH, Score=119, Expect=3e-28]} {Celegans: WBGene00010891, M18.6, [RH, Score=64.3, Expect=8e-11]} {Smed: dd_Smed_v6_9305_0_1, dd_Smed_v6_9305_0_1, [RH, Score=187, Expect=9e-53]} {RNA1509_21882} {RNA1310_14349} {RNA815_13604}
20. MligTC455_39273 5 0.1 Mlig455_045504

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_045504 {REF} {Length: 1320} {RNA1310_84541}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA