M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09473

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09473 19 0.39 Mlig455_050329

Neo: -

Age: -

 Mlig455_050329 {REF} {Length: 660} {NoTransDecoderORF} {RNA1509_9817} {RNA1310_86966} {RNA815_34606}

Cumulative graph for MligTC455_09473

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.419 0.714 0.99968 1.00000
RegionR2 -0.601 0.714 1.00000 1.00000
RegionR3 0.319 0.714 1.00000 1.00000
RegionR4 1.277 0.714 0.99982 1.00000
RegionR5 0.894 0.714 0.99981 1.00000
RegionR6 0.422 0.714 0.99989 1.00000
RegionR7 -0.271 0.714 1.00000 1.00000
RegionR8 -0.622 0.714 0.99988 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.557 0.714 0.99995 1.00000
RegenerationR2 3.653 0.714 0.72332 0.96331
RegenerationR3 3.619 0.714 0.24708 0.68112
RegenerationR4 1.171 0.714 0.69300 0.95063
RegenerationR5 1.511 0.714 0.71605 0.95811
RegenerationR6 0.773 0.714 0.59687 0.86719
RegenerationBL -0.596 0.714 0.99993 1.00000
RegenerationTP -0.343 0.714 0.99992 1.00000


Genes with expression patterns similar to MligTC455_09473

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09473 19 0.39 Mlig455_050329

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_050329 {REF} {Length: 660} {NoTransDecoderORF} {RNA1509_9817} {RNA1310_86966} {RNA815_34606}
2. MligTC455_11914 37 0.76 Mlig455_044332

Neo: -

Age: -

 HSPB8 1.729 - - - 0.776 0.953 - Mlig455_044332 {REF} {Length: 1369} {Pfam: Hsp20/alpha crystallin family [PF00011.23, score=94.7]; HSP20-like domain found in ArsA [PF17886.3, score=28.4]} {Human: ENSG00000152137, HSPB8, heat shock protein family B (small) member 8, [Score=47.4, Expect=5e-06]} {Mouse: ENSMUSG00000041548, Hspb8, heat shock protein 8, [Score=47.8, Expect=3e-06]; ENSMUSG00000006221, Hspb7, heat shock protein family, member 7 (cardiovascular), [Score=45.8, Expect=9e-06]} {Dmel: FBgn0035817, CG7409, [RH, Score=56.6, Expect=8e-10]} {Celegans: WBGene00008592, F08H9.4, [RH, Score=61.2, Expect=1e-11]} {Smed: dd_Smed_v6_5406_0_1, dd_Smed_v6_5406_0_1, [Score=103, Expect=3e-26]} {RNA1310_50408} {RNA815_48338}
3. MligTC455_35893 13 0.27 Mlig455_000160

Neo: -

Age: logFC(26M/2M)=-0.311

 LDB3 0.99 - - - - 0.990 - Mlig455_000160 {REF} {Length: 1707} {Pfam: PDZ domain [PF00595.26, score=50.4]; Domain of unknown function (DUF4749) [PF15936.7, score=28.1]} {Human: ENSG00000122367, LDB3, LIM domain binding 3, [RH, Score=77.8, Expect=4e-15]} {Mouse: ENSMUSG00000021798, Ldb3, LIM domain binding 3, [RH, Score=78.2, Expect=8e-16]} {Dmel: FBgn0035917, Zasp66, Z band alternatively spliced PDZ-motif protein 66, [Score=77.0, Expect=1e-15]} {Celegans: WBGene00010444, magi-1, MAGI (Membrane Associated Guanylate kinase Inverted) homolog, [Score=48.1, Expect=9e-06]} {Smed: dd_Smed_v6_1210_0_1, dd_Smed_v6_1210_0_1, [RH, Score=117, Expect=1e-28]} {RNA1509_22686} {RNA1310_5136, RNA1509_22686} {RNA1509_22686, RNA815_1546.1}
4. MligTC455_23983 21 0.44 Mlig455_025539, Mlig455_025557

Neo: -

Age: -

 0.986 - - - - 0.986 -

Mlig455_025539 {REF} {Length: 532} {NoTransDecoderORF}

Mlig455_025557 {REF} {Length: 3448} {RNA1509_50956} {RNA1310_70245} {RNA815_29876}
5. MligTC455_12107 15 0.32 Mlig455_053747

Neo: -

Age: -

 GABRA4 0.985 - - - - 0.985 - Mlig455_053747 {REF} {Length: 2104} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=155.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=95.4]} {Human: ENSG00000109158, GABRA4, gamma-aminobutyric acid type A receptor alpha4 subunit, [RH, Score=294, Expect=6e-93]; ENSG00000113327, GABRG2, gamma-aminobutyric acid type A receptor gamma2 subunit, [RH, Score=285, Expect=3e-90]} {Mouse: ENSMUSG00000029211, Gabra4, gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4, [RH, Score=291, Expect=7e-92]; ENSMUSG00000020436, Gabrg2, gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2, [RH, Score=279, Expect=2e-88]} {Dmel: FBgn0030707, CG8916, [Score=345, Expect=2e-113]} {Celegans: WBGene00008551, lgc-36, Ligand-Gated ion Channel, [RH, Score=276, Expect=1e-86]} {Smed: dd_Smed_v6_24908_0_1, dd_Smed_v6_24908_0_1, [Score=399, Expect=3e-136]} {RNA1310_12235.2} {RNA815_15667.1}
6. MligTC455_06458 109 2.27 Mlig455_058915

Neo: -

Age: -

 TMEM184B 0.982 - - - - 0.982 - Mlig455_058915 {REF} {Length: 2946} {Pfam: Organic solute transporter Ostalpha [PF03619.18, score=289.5]} {Human: ENSG00000198792, TMEM184B, transmembrane protein 184B, [RH, Score=437, Expect=5e-152]} {Mouse: ENSMUSG00000009035, Tmem184b, transmembrane protein 184b, [RH, Score=432, Expect=5e-150]} {Dmel: FBgn0035236, CG12004, [RH, Score=446, Expect=2e-154]} {Celegans: WBGene00009574, F40E10.6, [RH, Score=473, Expect=2e-166]} {Smed: dd_Smed_v6_3881_1_1, dd_Smed_v6_3881_1_1, [RH, Score=461, Expect=2e-162]} {RNA1310_13503.1} {RNA815_394.1}
7. MligTC455_54064 85 1.76 Mlig455_002543, Mlig455_002586

Neo: -

Age: -

Region-enriched R8: 4.573/0.01369

 0.981 - - - - 0.981 -

Mlig455_002543 {REF} {Length: 2311} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=32.4]} {RNA1310_11536} {RNA815_6619.1}

Mlig455_002586 {REF} {Length: 2383} {RNA1310_11536} {RNA815_6619.1}
8. MligTC455_44662 76 1.57 Mlig455_038241

Neo: -

Age: logFC(26M/2M)=-0.868

 ANO7 0.976 - - - - 0.976 - Mlig455_038241 {REF} {Length: 3705} {Pfam: Calcium-activated chloride channel [PF04547.14, score=457.8]} {Human: ENSG00000146205, ANO7, anoctamin 7, [Score=572, Expect=0.0]} {Mouse: ENSMUSG00000034107, Ano7, anoctamin 7, [Score=561, Expect=0.0]} {Dmel: FBgn0038721, subdued, [Score=420, Expect=3e-137]} {Celegans: WBGene00010138, anoh-1, Anoctamin, [Score=165, Expect=1e-43]} {Smed: dd_Smed_v6_19189_0_1, dd_Smed_v6_19189_0_1, [Score=659, Expect=0.0]} {RNA1509_46639} {RNA1310_1412.2} {RNA815_15650}
9. MligTC455_43038 44 0.92 Mlig455_015669

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_015669 {REF} {Length: 1488} {Smed: dd_Smed_v6_12148_0_2, dd_Smed_v6_12148_0_2, [Score=94.0, Expect=2e-22]} {RNA1310_25409} {RNA815_23260}
10. MligTC455_09463 10 0.21 Mlig455_030933

Neo: -

Age: -

 TMEM135 0.972 - - - - 0.972 - Mlig455_030933 {REF} {Length: 6047} {Pfam: N-terminal cysteine-rich region of Transmembrane protein 135 [PF15982.7, score=112.9]} {Human: ENSG00000166575, TMEM135, transmembrane protein 135, [Score=105, Expect=2e-26]} {Mouse: ENSMUSG00000039428, Tmem135, transmembrane protein 135, [Score=106, Expect=2e-27]} {Dmel: FBgn0051454, CG31454, [Score=104, Expect=3e-26]} {Celegans: WBGene00019345, tmem-135, Transmembrane protein 135 homolog, [Score=73.2, Expect=2e-15]} {Smed: dd_Smed_v6_6019_0_1, dd_Smed_v6_6019_0_1, [Score=95.9, Expect=1e-23]} {RNA1509_47962} {RNA1310_17224.1} {RNA815_20297}
11. MligTC455_49212 27 0.56 Mlig455_062516

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_062516 {REF} {Length: 1241} {RNA1310_27155} {RNA815_39321}
12. MligTC455_38228 1245 25.95 Mlig455_062302

Neo: -

Age: -

Region-specific R2: 4.636

Region-enriched R2: 3.645/0.00011
Region-enriched R3: 2.442/0.00111

 0.963 - - - - 0.963 - Mlig455_062302 {REF} {Length: 725} {RNA1509_22173, RNA1509_33106} {RNA1310_65747, RNA1509_22173, RNA1509_33106} {RNA1509_22173, RNA1509_33106, RNA815_15489}
13. MligTC455_24950 10 0.21 Mlig455_054045

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.585

 AHNAK 0.959 - - - - 0.959 - Mlig455_054045 {REF} {Length: 4123} {Pfam: Herpes virus major outer envelope glycoprotein (BLLF1) [PF05109.15, score=23.5]; AAA domain [PF13166.8, score=18.0]} {Human: ENSG00000124942, AHNAK, AHNAK nucleoprotein, [Score=90.9, Expect=2e-17]} {Mouse: ENSMUSG00000069833, Ahnak, AHNAK nucleoprotein (desmoyokin), [Score=94.0, Expect=1e-18]} {Dmel: FBgn0259108, futsch, [Score=54.3, Expect=1e-06]} {RNA1310_26440.1} {RNA815_25850.1}
14. MligTC455_03895 18 0.37 Mlig455_009197, Mlig455_009619

Neo: -

Age: Down-Up-Down

 0.956 - - - - 0.956 -

Mlig455_009197 {REF} {Length: 1774} {Smed: dd_Smed_v6_16261_0_1, dd_Smed_v6_16261_0_1, [Score=254, Expect=7e-82]} {RNA1310_72348.1} {RNA815_44982}

Mlig455_009619 {REF} {Length: 1794} {Smed: dd_Smed_v6_16261_0_1, dd_Smed_v6_16261_0_1, [Score=254, Expect=7e-82]} {RNA1310_72348.1} {RNA815_44982}
15. MligTC455_18541 1108 23.09 Mlig455_003326

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.290

Region-enriched R2: 4.433/0.00000
Region-enriched R3: 3.875/0.00000

 SFRP2 0.956 - - - - 0.956 - Mlig455_003326 {REF} {Length: 2658} {TRANSSPLICED} {Pfam: Fz domain [PF01392.24, score=86.0]} {Human: ENSG00000145423, SFRP2, secreted frizzled related protein 2, [RH, Score=167, Expect=4e-46]} {Mouse: ENSMUSG00000027996, Sfrp2, secreted frizzled-related protein 2, [RH, Score=165, Expect=2e-45]} {Dmel: FBgn0027342, fz4, frizzled 4, [Score=101, Expect=8e-22]} {Celegans: WBGene00022242, sfrp-1, Secreted Frizzled-Related Protein, [RH, Score=163, Expect=1e-44]} {Smed: dd_Smed_v6_13985_0_1, dd_Smed_v6_13985_0_1, [RH, Score=157, Expect=1e-42]} {RNA1509_5709} {RNA1310_15264} {RNA815_7067}
16. MligTC455_13028 20 0.41 Mlig455_004716

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_004716 {REF} {Length: 656} {NoTransDecoderORF}
17. MligTC455_17017 115 2.39 Mlig455_007909

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.468

 0.951 - - - - 0.951 - Mlig455_007909 {REF} {Length: 3445} {TRANSSPLICED} {Pfam: Sleepless protein [PF17064.7, score=37.0]} {Dmel: FBgn0260499, qvr, quiver, [Score=69.7, Expect=2e-15]} {Smed: dd_Smed_v6_16907_0_2, dd_Smed_v6_16907_0_2, [Score=74.7, Expect=1e-17]} {RNA1310_61248} {RNA815_27518}
18. MligTC455_19819 67 1.39 Mlig455_042327, Mlig455_047107

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_042327 {REF} {Length: 1414} {RNA1310_83687}

Mlig455_047107 {REF} {Length: 1283} {RNA1310_83687}
19. MligTC455_32137 3 0.06 Mlig455_032362

Neo: -

Age: -

 PIF1 0.951 - - - - 0.951 - Mlig455_032362 {REF} {Length: 1962} {Pfam: PIF1-like helicase [PF05970.16, score=22.6]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=49.3, Expect=1e-05]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=49.7, Expect=8e-06]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=50.1, Expect=2e-06]} {RNA1509_2607} {RNA1310_5853.1} {RNA815_5517.1}
20. MligTC455_28408 47 0.98 Mlig455_055493

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_055493 {REF} {Length: 5141} {RNA1509_42084} {RNA1310_16069} {RNA815_21447}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA