M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09752

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09752 15 0.30 Mlig455_006516

Neo: -

Age: -

 Mlig455_006516 {REF} {Length: 635} {NoTransDecoderORF}

Cumulative graph for MligTC455_09752

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.597 0.742 1.00000 1.00000
RegionR2 3.244 0.742 0.25720 0.63770
RegionR3 1.69 0.742 0.97931 1.00000
RegionR4 -0.966 0.742 0.99934 1.00000
RegionR5 0.633 0.742 0.99992 1.00000
RegionR6 1.069 0.742 0.63377 1.00000
RegionR7 -0.695 0.742 1.00000 1.00000
RegionR8 -0.378 0.742 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 4.021 0.742 1.00000 1.00000
RegenerationR2 -0.922 0.742 0.37140 0.79697
RegenerationR3 1.206 0.742 0.94277 1.00000
RegenerationR4 -0.751 0.742 0.42445 0.82784
RegenerationR5 -0.084 0.742 0.68620 0.94631
RegenerationR6 -0.444 0.742 0.27045 0.62080
RegenerationBL 0.272 0.742 1.00000 1.00000
RegenerationTP 4.517 0.742 0.55364 0.93559


Genes with expression patterns similar to MligTC455_09752

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09752 15 0.3 Mlig455_006516

Neo: -

Age: -

 2 1.000 - - - 1.000 - Mlig455_006516 {REF} {Length: 635} {NoTransDecoderORF}
2. MligTC455_35552 32 0.67 Mlig455_035296

Neo: -

Age: -

 SCNN1B 0.988 - - - - 0.988 - Mlig455_035296 {REF} {Length: 3475} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=192.5]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=64.7, Expect=5e-10]} {Mouse: ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=57.8, Expect=4e-08]} {Celegans: WBGene00006832, unc-105, Degenerin-like protein unc-105, [Score=77.0, Expect=2e-14]} {Smed: dd_Smed_v6_22997_0_1, dd_Smed_v6_22997_0_1, [Score=357, Expect=9e-114]} {RNA1509_53211} {RNA1310_6642.3, RNA1509_53211} {RNA1509_53211, RNA815_12322}
3. MligTC455_12759 19 0.39 Mlig455_029819

Neo: -

Age: -

 0.984 - - - - 0.984 - Mlig455_029819 {REF} {Length: 285} {NoTransDecoderORF}
4. MligTC455_20717 964 20.08 Mlig455_010303, Mlig455_010334

Neo: -

Age: -

Region-enriched R6: 8.114/0.00000

Regeneration-upregulated TP: 8.019

Regeneration-enriched TP: 8.019

 0.978 - - - - 0.978 -

Mlig455_010303 {REF} {Length: 1139} {TRANSSPLICED} {Mouse: ENSMUSG00000044581, 4932415D10Rik, RIKEN cDNA 4932415D10 gene, [Score=45.8, Expect=7e-06]} {RNA1509_30258} {RNA1310_41086.1} {RNA815_30011}

Mlig455_010334 {REF} {Length: 2409} {Mouse: ENSMUSG00000044581, 4932415D10Rik, RIKEN cDNA 4932415D10 gene, [Score=45.8, Expect=7e-06]} {RNA1509_54865} {RNA1310_41086.1} {RNA815_30011}
5. MligTC455_22923 53 1.1 Mlig455_068434

Neo: -

Age: Down-Up-Down

 MYLK3 0.978 - - - - 0.978 - Mlig455_068434 {REF} {Length: 2249} {Pfam: Protein kinase domain [PF00069.27, score=28.7]} {Human: ENSG00000140795, MYLK3, myosin light chain kinase 3, [Score=49.7, Expect=1e-07]} {Mouse: ENSMUSG00000031698, Mylk3, myosin light chain kinase 3, [Score=49.7, Expect=9e-08]} {Dmel: FBgn0265045, Strn-Mlck, Stretchin-Mlck, [Score=48.5, Expect=1e-07]} {Smed: dd_Smed_v6_8041_0_1, dd_Smed_v6_8041_0_1, [Score=49.3, Expect=4e-08]} {RNA1509_36787} {RNA1310_62109} {RNA815_9443}
6. MligTC455_11479 25 0.52 Mlig455_038924

Neo: -

Age: -

Regeneration-enriched R3: 7.663
Regeneration-enriched R4: 7.225

 AVP 0.971 - - - - 0.971 - Mlig455_038924 {REF} {Length: 1513} {Pfam: Neurohypophysial hormones, C-terminal Domain [PF00184.19, score=54.9]} {Human: ENSG00000101200, AVP, arginine vasopressin, [Score=43.5, Expect=7e-06]} {Mouse: ENSMUSG00000037727, Avp, arginine vasopressin, [Score=45.4, Expect=1e-06]} {RNA1509_55830} {RNA1310_49297} {RNA815_9217}
7. MligTC455_18114 414 8.63 Mlig455_038324, Mlig455_050230

Neo: -

Age: Down-Up-Down

 0.971 - - - - 0.971 -

Mlig455_038324 {REF} {Length: 2163} {Pfam: Transmembrane protein family 72 [PF16054.7, score=60.9]} {Smed: dd_Smed_v6_6789_0_1, dd_Smed_v6_6789_0_1, [RH, Score=94.7, Expect=4e-24]} {RNA1509_37575} {RNA1310_23999} {RNA815_9176.1}

Mlig455_050230 {REF} {Length: 2326} {Pfam: Transmembrane protein family 72 [PF16054.7, score=60.9]} {Smed: dd_Smed_v6_6789_0_1, dd_Smed_v6_6789_0_1, [RH, Score=94.7, Expect=4e-24]} {RNA1509_37575} {RNA1310_23999, RNA1509_37575} {RNA1509_37575, RNA815_26984}
8. MligTC455_55993 15 0.32 Mlig455_028096

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_028096 {REF} {Length: 20} {TRANSSPLICED} {NoTransDecoderORF}
9. MligTC455_01849 9 0.19 Mlig455_047954

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_047954 {REF} {Length: 100} {NoTransDecoderORF} {RNA1509_25809} {RNA1310_27224.2} {RNA815_4317.1}
10. MligTC455_20933 21 0.43 Mlig455_013811

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_013811 {REF} {Length: 2349} {Pfam: Glycine rich protein [PF12810.9, score=43.4]; PAN domain [PF00024.28, score=21.7]} {RNA1310_61234} {RNA815_39176}
11. MligTC455_37007 1046 21.79 Mlig455_025758, Mlig455_064376

Neo: -

Age: logFC(26M/2M)=-0.452

Region-enriched R8: 2.557/0.00000
Region-enriched R7: 2.027/0.00017

Regeneration-downregulated BL: -3.225

Regeneration-depleted BL: -3.225

 0.968 - - - - 0.968 -

Mlig455_025758 {REF} {Length: 1194} {Pfam: Neurensin [PF14927.8, score=39.7]; Uncharacterised conserved protein (DUF2371) [PF10177.11, score=21.6]} {RNA1509_51128} {RNA1310_51502.1, RNA1509_51128} {RNA1509_51128, RNA815_17212}

Mlig455_064376 {REF} {Length: 1196} {Pfam: Neurensin [PF14927.8, score=41.9]; Uncharacterised conserved protein (DUF2371) [PF10177.11, score=20.6]} {RNA1509_51128} {RNA1310_51502.1} {RNA815_17212}
12. MligTC455_16825 83 1.73 Mlig455_004646, Mlig455_014982, Mlig455_033046, Mlig455_067354, Mlig455_070980

Neo: -

Age: Down-Up-Down

Region-enriched R3: 4.629/0.04385

 0.966 - - - - 0.966 -

Mlig455_004646 {REF} {Length: 513} {NoTransDecoderORF} {RNA1509_26883} {RNA1310_785} {RNA815_2080}

Mlig455_014982 {REF} {Length: 176} {NoTransDecoderORF} {RNA1509_26883} {RNA1310_785} {RNA815_2080}

Mlig455_033046 {REF} {Length: 514} {NoTransDecoderORF} {RNA1509_26883} {RNA1310_785} {RNA815_2080}

Mlig455_067354 {REF} {Length: 520} {NoTransDecoderORF} {RNA1509_26883} {RNA1310_785} {RNA815_2080}

Mlig455_070980 {REF} {Length: 3436} {RNA1509_26883} {RNA1310_785} {RNA815_2080}
13. MligTC455_25728 126 2.62 Mlig455_033609, Mlig455_050117

Neo: -

Age: logFC(26M/2M)=1.218

 0.964 - - - - 0.964 -

Mlig455_033609 {REF} {Length: 1672} {Pfam: Hsp20/alpha crystallin family [PF00011.23, score=84.6]; HSP20-like domain found in ArsA [PF17886.3, score=27.8]} {Dmel: FBgn0001225, Hsp26, Heat shock protein 26, [RH, Score=57.4, Expect=1e-09]} {Smed: dd_Smed_v6_5406_0_1, dd_Smed_v6_5406_0_1, [RH, Score=110, Expect=9e-29]} {RNA1509_26837} {RNA1310_32639} {RNA815_36629}

Mlig455_050117 {REF} {Length: 1185} {Pfam: Hsp20/alpha crystallin family [PF00011.23, score=84.6]; HSP20-like domain found in ArsA [PF17886.3, score=27.8]} {Dmel: FBgn0001225, Hsp26, Heat shock protein 26, [RH, Score=57.4, Expect=1e-09]} {Smed: dd_Smed_v6_5406_0_1, dd_Smed_v6_5406_0_1, [RH, Score=110, Expect=9e-29]} {RNA1509_26837} {RNA1310_32639, RNA1509_26837} {RNA1509_26837, RNA815_36629}
14. MligTC455_49338 92 1.92 Mlig455_019714

Neo: -

Age: -

Region-enriched R2: 3.827/0.02214
Region-enriched R7: 3.806/0.00162
Region-enriched R6: 3.186/0.02925

 CA7 0.964 - - - - 0.964 - Mlig455_019714 {REF} {Length: 2496} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=207.6]} {Human: ENSG00000168748, CA7, carbonic anhydrase 7, [Score=157, Expect=2e-45]} {Mouse: ENSMUSG00000031883, Car7, carbonic anhydrase 7, [Score=156, Expect=3e-45]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [Score=129, Expect=8e-35]} {Celegans: WBGene00000283, cah-5, Putative carbonic anhydrase 5, [Score=89.0, Expect=6e-20]} {Smed: dd_Smed_v6_11683_0_1, dd_Smed_v6_11683_0_1, [Score=159, Expect=4e-46]} {RNA1509_43765} {RNA1310_22186, RNA1509_43765} {RNA1509_43765, RNA815_18428}
15. MligTC455_26433 15 0.31 Mlig455_013559

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_013559 {REF} {Length: 1067} {NoTransDecoderORF} {RNA1509_38155} {RNA1310_16376} {RNA815_12881}
16. MligTC455_00789 21 0.43 Mlig455_014322

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_014322 {REF} {Length: 317} {NoTransDecoderORF}
17. MligTC455_52099 92 1.92 Mlig455_021391

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_021391 {REF} {Length: 1039} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=97.1]} {Dmel: FBgn0034583, CG10527, [Score=75.9, Expect=1e-16]} {Smed: dd_Smed_v6_766_0_1, dd_Smed_v6_766_0_1, [Score=121, Expect=8e-36]} {RNA1310_43030} {RNA815_25924}
18. MligTC455_13056 55 1.15 Mlig455_067464

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_067464 {REF} {Length: 1060} {NoTransDecoderORF}
19. MligTC455_13760 106 2.22 Mlig455_002596

Neo: -

Age: Up-Up-Down

 0.951 - - - - 0.951 - Mlig455_002596 {REF} {Length: 1396} {RNA1310_31120} {RNA815_31550}
20. MligTC455_42877 141 2.93 Mlig455_058822

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.267

 0.95 - - - - 0.950 - Mlig455_058822 {REF} {Length: 1815} {TRANSSPLICED} {Mouse: ENSMUSG00000027424, Mgme1, mitochondrial genome maintenance exonuclease 1, [RH, Score=119, Expect=1e-30]} {Celegans: WBGene00077500, C27H6.9, Mitochondrial genome maintenance exonuclease 1, [RH, Score=64.3, Expect=1e-11]} {Smed: dd_Smed_v6_14245_0_2, dd_Smed_v6_14245_0_2, [RH, Score=112, Expect=2e-29]} {RNA1509_18510} {RNA1310_22411} {RNA815_25218}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA