M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_09896

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_09896 64 1.33 Mlig455_036651, Mlig455_036677

Neo: -

Age: -

Mlig455_036651 {REF} {Length: 654} {RNA1310_143507}

Mlig455_036677 {REF} {Length: 1205} {RNA1310_115592}

Cumulative graph for MligTC455_09896

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 5.869 1.176 0.03872 0.48108
RegionR2 -3.729 1.176 0.99992 1.00000
RegionR3 0.219 1.176 0.74829 1.00000
RegionR4 1.612 1.176 0.24763 0.54637
RegionR5 -2.973 1.176 0.99983 1.00000
RegionR6 0.183 1.176 0.56481 1.00000
RegionR7 0.645 1.176 0.62265 1.00000
RegionR8 -1.825 1.176 0.99983 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -9.276 1.176 0.15888 0.90226
RegenerationR2 2.041 1.176 0.35025 0.78180
RegenerationR3 -1.266 1.176 0.58092 0.89927
RegenerationR4 -0.705 1.176 0.59907 0.91297
RegenerationR5 -0.221 1.176 0.63867 0.92617
RegenerationR6 -0.169 1.176 0.78204 0.96849
RegenerationBL -4.209 1.176 1.00000 1.00000
RegenerationTP 1.232 1.176 0.75290 1.00000


Genes with expression patterns similar to MligTC455_09896

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_09896 64 1.33 Mlig455_036651, Mlig455_036677

Neo: -

Age: -

 4 1.000 - 1.000 1.000 1.000 -

Mlig455_036651 {REF} {Length: 654} {RNA1310_143507}

Mlig455_036677 {REF} {Length: 1205} {RNA1310_115592}
2. MligTC455_03024 21 0.44 Mlig455_059052

Neo: -

Age: -

 0.988 0.988 - - - - - Mlig455_059052 {REF} {Length: 2443} {RNA1509_37050} {RNA1310_74404} {RNA815_50491.1}
3. MligTC455_41763 84 1.75 Mlig455_065446

Neo: -

Age: logFC(26M/2M)=-0.624

 0.978 - - - - 0.978 - Mlig455_065446 {REF} {Length: 1448} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=50.8]} {Smed: dd_Smed_v6_21509_0_1, dd_Smed_v6_21509_0_1, [Score=53.5, Expect=7e-08]} {RNA1310_24513} {RNA815_25505}
4. MligTC455_05822 11 0.24 Mlig455_054322, Mlig455_054334

Neo: -

Age: -

 0.972 0.972 - - - - -

Mlig455_054322 {REF} {Length: 1155} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=48.5]} {Smed: dd_Smed_v6_42389_0_1, dd_Smed_v6_42389_0_1, [Score=117, Expect=1e-30]} {RNA1310_64330}

Mlig455_054334 {REF} {Length: 1102} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=47.6]} {Smed: dd_Smed_v6_11922_0_1, dd_Smed_v6_11922_0_1, [Score=106, Expect=2e-26]} {RNA1310_64330}
5. MligTC455_48945 346 7.21 Mlig455_059313

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.649

 0.966 - - 0.966 - - - Mlig455_059313 {REF} {Length: 1224} {TRANSSPLICED} {Pfam: Dihydrofolate reductase [PF00186.21, score=98.7]} {Smed: dd_Smed_v6_7808_0_1, dd_Smed_v6_7808_0_1, [RH, Score=107, Expect=2e-29]} {RNA1509_40431} {RNA1310_21528} {RNA815_25460}
6. MligTC455_33554 32 0.66 Mlig455_005753

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_005753 {REF} {Length: 2626} {RNA1509_48505} {RNA1310_62885} {RNA815_39881}
7. MligTC455_23068 16 0.34 Mlig455_015951

Neo: -

Age: -

 0.962 0.962 - - - - - Mlig455_015951 {REF} {Length: 754} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_49705} {RNA1310_41757} {RNA815_21479}
8. MligTC455_37908 15 0.3 Mlig455_065052

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_065052 {REF} {Length: 2239} {RNA1509_6302} {RNA1310_32008} {RNA815_60796}
9. MligTC455_08938 38 0.79 Mlig455_030563

Neo: Germline

Age: -

 0.96 0.960 - - - - - Mlig455_030563 {REF} {Length: 1076} {RNA1310_74944} {RNA815_42096}
10. MligTC455_26346 19 0.4 Mlig455_024813

Neo: -

Age: -

 NYNRIN 0.958 0.958 - - - - - Mlig455_024813 {REF} {Length: 4045} {TRANSSPLICED} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.3]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=87.3]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=60.5]; Major Facilitator Superfamily [PF07690.18, score=57.1]; Integrase core domain [PF00665.28, score=45.5]; Integrase zinc binding domain [PF17921.3, score=43.9]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=68.6, Expect=6e-11]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=67.8, Expect=6e-11]} {Celegans: WBGene00017369, F10G7.5, [Score=93.6, Expect=1e-19]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=283, Expect=8e-81]} {RNA1509_22347} {RNA1310_15525.1} {RNA815_6340}
11. MligTC455_32280 64 1.34 Mlig455_011932, Mlig455_047803, Mlig455_070958, Mlig455_070959

Neo: Germline

Age: Down-Up-Down

Region-enriched R3: 5.180/0.00563

 0.953 - - - - 0.953 -

Mlig455_011932 {REF} {Length: 1608} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=178.0]} {RNA1310_256.1} {RNA815_3111}

Mlig455_047803 {REF} {Length: 2197} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=264.7]} {RNA1310_256.1} {RNA815_3111}

Mlig455_070958 {REF} {Length: 843} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF07727.16, score=262.6]; gag-polypeptide of LTR copia-type [PF14223.8, score=151.2]; Integrase core domain [PF00665.28, score=60.8]; GAG-pre-integrase domain [PF13976.8, score=43.6]; Domain of unknown function (DUF4219) [PF13961.8, score=29.0]; Integrase core domain [PF13683.8, score=19.6]} {RNA1310_256.1} {RNA815_3111}

Mlig455_070959 {REF} {Length: 549} {NoTransDecoderORF} {RNA1310_256.1} {RNA815_32599.2}
12. Mlig999011.1 0.951 - - - - 0.951 -
13. MligTC455_04352 55 1.14 Mlig455_039494

Neo: -

Age: Up-Down-Down

 0.951 0.951 - - - - - Mlig455_039494 {REF} {Length: 936} {RNA1509_52330} {RNA1310_54745} {RNA815_39086}
14. MligTC455_07455 65 1.36 Mlig455_018672, Mlig455_021404, Mlig455_021622, Mlig455_034207, Mlig455_060408, Mlig455_061583, Mlig455_065281

Neo: -

Age: logFC(26M/2M)=3.048

 SIDT1 0.951 - - - 0.951 - -

Mlig455_018672 {REF} {Length: 1178} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=106.4]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=80.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=21.5]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=83.2, Expect=1e-17]} {RNA1509_44393} {RNA1310_15428.2} {RNA815_24380}

Mlig455_021404 {REF} {Length: 3137} {Pfam: dsRNA-gated channel SID-1 [PF13965.8, score=273.9]} {Human: ENSG00000072858, SIDT1, SID1 transmembrane family member 1, [Score=200, Expect=2e-53]} {Mouse: ENSMUSG00000022696, Sidt1, SID1 transmembrane family, member 1, [Score=202, Expect=3e-54]} {Celegans: WBGene00006477, chup-1, CHolesterol UPtake associated, [Score=180, Expect=2e-47]} {Smed: dd_Smed_v6_8407_0_1, dd_Smed_v6_8407_0_1, [Score=217, Expect=3e-60]} {RNA1509_44393} {RNA1310_32542} {RNA815_35719}

Mlig455_021622 {REF} {Length: 1577} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=105.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=79.4]; Integrase core domain [PF13683.8, score=23.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=20.9]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=83.2, Expect=2e-17]} {RNA1509_44393} {RNA1310_15428.2} {RNA815_24380}

Mlig455_034207 {REF} {Length: 1130} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=106.4]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=80.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=21.5]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=83.2, Expect=9e-18]} {RNA1509_44393} {RNA1310_15428.2} {RNA815_24380}

Mlig455_060408 {REF} {Length: 2021} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=52.1]; Integrase core domain [PF00665.28, score=30.3]; Integrase core domain [PF13683.8, score=24.0]} {Celegans: WBGene00007723, C25F9.2, [Score=188, Expect=6e-50]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=72.4, Expect=2e-13]} {RNA1509_44393} {RNA1310_15428.2} {RNA815_8935}

Mlig455_061583 {REF} {Length: 2976} {Pfam: Integrase core domain [PF00665.28, score=29.6]; Integrase core domain [PF13683.8, score=24.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=20.3]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=83.2, Expect=4e-16]} {RNA1509_44393} {RNA1310_2668.1} {RNA815_24529}

Mlig455_065281 {REF} {Length: 851} {Pfam: Integrase core domain [PF00665.28, score=30.0]; Integrase core domain [PF13683.8, score=26.0]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=73.9, Expect=6e-15]} {RNA1509_44393} {RNA1310_15428.2} {RNA815_62340}
15. MligTC455_39246 37 0.77 Mlig455_067040

Neo: -

Age: -

 0.951 0.951 - - - - - Mlig455_067040 {REF} {Length: 1735} {RNA1509_47157} {RNA1310_150085} {RNA815_6917.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA