M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_10318

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_10318 9 0.19 Mlig455_020020

Neo: -

Age: -

 Mlig455_020020 {REF} {Length: 543} {NoTransDecoderORF} {RNA1310_75830}

Cumulative graph for MligTC455_10318

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_10318

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_05939 2 0.05 Mlig455_006611

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_006611 {REF} {Length: 662} {NoTransDecoderORF} {RNA1310_102292}
2. MligTC455_10318 9 0.19 Mlig455_020020

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_020020 {REF} {Length: 543} {NoTransDecoderORF} {RNA1310_75830}
3. MligTC455_47711 21 0.43 Mlig455_031220

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_031220 {REF} {Length: 264} {NoTransDecoderORF}
4. MligTC455_40182 9 0.18 Mlig455_038793

Neo: -

Age: -

 0.999 - - - - 0.999 - Mlig455_038793 {REF} {Length: 3981} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=18.6]} {RNA1509_31679} {RNA1310_3160.1} {RNA815_32810}
5. MligTC455_17748 9 0.19 Mlig455_052149, Mlig455_060687

Neo: -

Age: -

 PHC2, PHC3 0.997 - - - - 0.997 -

Mlig455_052149 {REF} {Length: 3350} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF00536.32, score=35.1]; SAM domain (Sterile alpha motif) [PF07647.19, score=21.9]} {Human: ENSG00000134686, PHC2, polyhomeotic homolog 2, [RH, Score=123, Expect=4e-28]} {Mouse: ENSMUSG00000040669, Phc1, polyhomeotic 1, [RH, Score=82.4, Expect=2e-15]; ENSMUSG00000037652, Phc3, polyhomeotic 3, [RH, Score=79.7, Expect=1e-14]; ENSMUSG00000028796, Phc2, polyhomeotic 2, [RH, Score=79.3, Expect=1e-14]} {Dmel: FBgn0004861, ph-p, polyhomeotic proximal, [RH, Score=80.9, Expect=5e-15]} {Smed: dd_Smed_v6_8875_0_1, dd_Smed_v6_8875_0_1, [RH, Score=89.7, Expect=3e-18]} {RNA1509_8576} {RNA1310_5813} {RNA815_6430}

Mlig455_060687 {REF} {Length: 3077} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF00536.32, score=35.2]; SAM domain (Sterile alpha motif) [PF07647.19, score=22.0]} {Human: ENSG00000173889, PHC3, polyhomeotic homolog 3, [RH, Score=84.7, Expect=4e-16]; ENSG00000111752, PHC1, polyhomeotic homolog 1, [RH, Score=82.4, Expect=2e-15]} {Mouse: ENSMUSG00000040669, Phc1, polyhomeotic 1, [RH, Score=82.4, Expect=2e-15]; ENSMUSG00000037652, Phc3, polyhomeotic 3, [RH, Score=79.7, Expect=1e-14]; ENSMUSG00000028796, Phc2, polyhomeotic 2, [RH, Score=79.3, Expect=1e-14]} {Dmel: FBgn0004861, ph-p, polyhomeotic proximal, [RH, Score=80.9, Expect=5e-15]} {Smed: dd_Smed_v6_8875_0_1, dd_Smed_v6_8875_0_1, [RH, Score=89.4, Expect=5e-18]} {RNA1509_8576} {RNA1310_5813, RNA1509_8576} {RNA1509_8576, RNA815_6430}
6. MligTC455_11543 11 0.23 Mlig455_014605

Neo: -

Age: -

 CHRNA4 0.991 - - - - 0.991 - Mlig455_014605 {REF} {Length: 2889} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=194.0]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=128.2]} {Human: ENSG00000101204, CHRNA4, cholinergic receptor nicotinic alpha 4 subunit, [Score=246, Expect=5e-72]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=244, Expect=2e-72]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=244, Expect=2e-72]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=242, Expect=6e-72]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=236, Expect=3e-69]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=243, Expect=4e-72]; ENSMUSG00000022041, Chrna2, cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal), [Score=236, Expect=2e-69]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=260, Expect=7e-79]} {Celegans: WBGene00006797, unc-63, Acetylcholine receptor subunit alpha-type unc-63, [Score=244, Expect=4e-73]} {Smed: dd_Smed_v6_8486_0_1, dd_Smed_v6_8486_0_1, [RH, Score=525, Expect=2e-179]} {RNA1509_49660} {RNA1310_9527.1, RNA1509_49660} {RNA1509_49660, RNA815_12587}
7. MligTC455_00427 5 0.11 Mlig455_057778

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_057778 {REF} {Length: 345} {NoTransDecoderORF}
8. MligTC455_07038 13 0.27 Mlig455_060260

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_060260 {REF} {Length: 804}
9. MligTC455_10914 14 0.3 Mlig455_069196

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_069196 {REF} {Length: 301} {RNA1509_32467} {RNA1310_4414.1}
10. MligTC455_36365 5 0.1 Mlig455_064358

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_064358 {REF} {Length: 932} {Pfam: ARC105 or Med15 subunit of Mediator complex non-fungal [PF09606.12, score=18.0]} {RNA1509_472} {RNA1310_19810.1} {RNA815_21668}
11. MligTC455_09698 12 0.25 Mlig455_053150

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_053150 {REF} {Length: 448} {NoTransDecoderORF} {RNA1509_6161} {RNA1310_32529} {RNA815_33418}
12. MligTC455_14517 21 0.45 Mlig455_071167

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_071167 {REF} {Length: 785} {NoTransDecoderORF} {RNA1310_122612}
13. MligTC455_20873 15 0.31 Mlig455_030444

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_030444 {REF} {Length: 2125} {Pfam: Transposase [PF01498.20, score=68.0]; DDE superfamily endonuclease [PF13358.8, score=46.7]; Helix-turn-helix domain [PF13518.8, score=29.7]; Homeodomain-like domain [PF13384.8, score=26.1]; Winged helix-turn helix [PF13551.8, score=25.8]; Helix-turn-helix domain [PF13936.8, score=23.2]; Homeodomain-like domain [PF13565.8, score=21.3]} {Smed: dd_Smed_v6_16239_0_2, dd_Smed_v6_16239_0_2, [Score=149, Expect=3e-43]} {RNA1509_10864} {RNA1310_16853.1} {RNA815_5432}
14. MligTC455_40181 22 0.46 Mlig455_038785

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_038785 {REF} {Length: 4820} {TRANSSPLICED} {RNA1509_31679} {RNA1310_3160.1, RNA1509_31679} {RNA1509_31679, RNA815_16259}
15. MligTC455_04479 5 0.1 Mlig455_055261

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_055261 {REF} {Length: 1356} {RNA1310_128312}
16. MligTC455_07323 40 0.82 Mlig455_015074, Mlig455_015193

Neo: -

Age: -

 0.966 - - - - 0.966 -

Mlig455_015074 {REF} {Length: 4015} {Pfam: Initiation control protein YabA [PF06156.15, score=24.3]} {RNA1509_58516} {RNA1310_40818} {RNA815_42071}

Mlig455_015193 {REF} {Length: 4016} {Pfam: Initiation control protein YabA [PF06156.15, score=24.3]} {RNA1509_58516} {RNA1310_40818} {RNA815_42071}
17. MligTC455_54440 4 0.08 Mlig455_037625

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_037625 {REF} {Length: 268} {NoTransDecoderORF} {RNA1509_3801} {RNA1310_19730} {RNA815_8211}
18. MligTC455_03058 57 1.18 Mlig455_063622

Neo: -

Age: Down-Up-Down

 0.964 - - - - 0.964 - Mlig455_063622 {REF} {Length: 2139} {Pfam: Lectin C-type domain [PF00059.23, score=30.0]} {Smed: dd_Smed_v6_32483_0_1, dd_Smed_v6_32483_0_1, [Score=58.5, Expect=2e-10]} {RNA1310_85243}
19. MligTC455_53956 68 1.41 Mlig455_046324

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_046324 {REF} {Length: 3358} {RNA1310_18298} {RNA815_25523}
20. MligTC455_24658 23 0.47 Mlig455_032008

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.655

 0.959 - - - - 0.959 - Mlig455_032008 {REF} {Length: 2567} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=33.1]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=29.8]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=56.2, Expect=2e-08]} {Smed: dd_Smed_v6_19759_0_1, dd_Smed_v6_19759_0_1, [Score=85.5, Expect=4e-18]} {RNA1310_42806} {RNA815_45324}
21. MligTC455_09631 5 0.1 Mlig455_063472

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_063472 {REF} {Length: 390} {NoTransDecoderORF} {RNA1509_5842} {RNA1310_3466.1} {RNA815_1029}
22. MligTC455_30155 7 0.15 Mlig455_069271

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_069271 {REF} {Length: 3746} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.8]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=65.1, Expect=3e-12]} {RNA1509_47056} {RNA1310_5710.1, RNA1509_47056} {RNA1509_47056, RNA815_6291.1}
23. MligTC455_02013 6 0.12 Mlig455_039645

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_039645 {REF} {Length: 1131} {RNA1509_58356} {RNA1310_40864, RNA1509_58356} {RNA1509_58356, RNA815_56347}
24. MligTC455_52453 127 2.65 Mlig455_034004, Mlig455_060386

Neo: -

Age: -

Region-enriched R3: 3.580/0.00648

 0.954 - - - - 0.954 -

Mlig455_034004 {REF} {Length: 453} {NoTransDecoderORF} {RNA1509_42969} {RNA1310_78537} {RNA815_37747}

Mlig455_060386 {REF} {Length: 384} {RNA1509_24113} {RNA1310_4423} {RNA815_37747}
25. MligTC455_15863 27 0.56 Mlig455_034725

Neo: -

Age: Up-Down-Up

 0.952 - - - - 0.952 - Mlig455_034725 {REF} {Length: 2861} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=140.8]} {Celegans: WBGene00006748, unc-8, Degenerin unc-8, [Score=53.1, Expect=4e-07]} {Smed: dd_Smed_v6_15920_0_1, dd_Smed_v6_15920_0_1, [RH, Score=288, Expect=9e-91]} {RNA1509_34117} {RNA1310_14316} {RNA815_5722}
26. MligTC455_43083 230 4.79 Mlig455_010304, Mlig455_010335, Mlig455_065656

Neo: -

Age: -

 AHNAK 0.95 - - - - 0.950 -

Mlig455_010304 {REF} {Length: 1799} {TRANSSPLICED} {Human: ENSG00000124942, AHNAK, AHNAK nucleoprotein, [Score=48.9, Expect=3e-06]} {Mouse: ENSMUSG00000069833, Ahnak, AHNAK nucleoprotein (desmoyokin), [Score=54.3, Expect=2e-08]} {RNA1310_47293.1} {RNA815_36129}

Mlig455_010335 {REF} {Length: 540} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_47293.1} {RNA815_36129}

Mlig455_065656 {REF} {Length: 1733} {TRANSSPLICED} {RNA1310_47293.1} {RNA815_36129}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA