M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11257

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11257 114 2.38 Mlig455_001713

Neo: -

Age: -

 Mlig455_001713 {REF} {Length: 620} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_27830} {RNA815_13308}

Cumulative graph for MligTC455_11257

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.057 1.883 0.16924 0.79407
RegionR2 1.647 1.883 0.18537 0.53775
RegionR3 0.308 1.883 0.76147 1.00000
RegionR4 1.653 1.883 0.16219 0.42082
RegionR5 1.051 1.883 0.35479 0.70532
RegionR6 1.48 1.883 0.20553 0.78005
RegionR7 -0.2 1.883 0.91859 1.00000
RegionR8 0.117 1.883 0.84522 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.62 1.883 1.00000 1.00000
RegenerationR2 -1.312 1.883 0.12807 0.55239
RegenerationR3 1.061 1.883 0.30430 0.73507
RegenerationR4 0.213 1.883 0.84520 1.00000
RegenerationR5 -0.09 1.883 0.92701 1.00000
RegenerationR6 0.509 1.883 0.59354 0.86555
RegenerationBL 0.197 1.883 0.87477 1.00000
RegenerationTP 2.081 1.883 0.07832 0.44672


Genes with expression patterns similar to MligTC455_11257

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11257 114 2.38 Mlig455_001713

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_001713 {REF} {Length: 620} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_27830} {RNA815_13308}
2. MligTC455_31216 103 2.15 Mlig455_007970, Mlig455_033836

Neo: -

Age: -

 1.904 - - - 0.963 0.941 -

Mlig455_007970 {REF} {Length: 4393} {RNA1509_47848} {RNA1310_23510} {RNA815_21831}

Mlig455_033836 {REF} {Length: 7022} {RNA1509_51255} {RNA1310_40336.1} {RNA815_39433}
3. MligTC455_44518 54 1.13 Mlig455_023669

Neo: -

Age: -

 1.797 - - - 0.825 0.972 - Mlig455_023669 {REF} {Length: 715} {NoTransDecoderORF} {RNA1509_58403} {RNA1310_45863.1} {RNA815_18481.1}
4. MligTC455_07051 26 0.54 Mlig455_024162, Mlig455_047642

Neo: -

Age: -

 0.983 - - - - 0.983 -

Mlig455_024162 {REF} {Length: 2495} {Pfam: SET domain [PF00856.30, score=35.1]; C2H2-type zinc-finger domain [PF13909.8, score=22.1]} {RNA1310_131883} {RNA815_45891}

Mlig455_047642 {REF} {Length: 799} {RNA1310_131883}
5. MligTC455_46660 319 6.65 Mlig455_029098, Mlig455_029118

Neo: -

Age: -

 TPCN1 0.98 - - - - 0.980 -

Mlig455_029098 {REF} {Length: 3236} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=111.5]} {Human: ENSG00000186815, TPCN1, two pore segment channel 1, [Score=167, Expect=2e-42]} {Mouse: ENSMUSG00000032741, Tpcn1, two pore channel 1, [Score=176, Expect=5e-46]} {Dmel: FBgn0085434, NaCP60E, Na channel protein 60E, [Score=65.5, Expect=1e-10]} {Celegans: WBGene00006742, unc-2, High voltage activated calcium channel alpha-1 subunit, [Score=53.1, Expect=7e-07]} {Smed: dd_Smed_v6_8333_0_1, dd_Smed_v6_8333_0_1, [Score=169, Expect=6e-44]} {RNA1509_51248} {RNA1310_6971.3} {RNA815_6160}

Mlig455_029118 {REF} {Length: 3351} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=165.9]} {Human: ENSG00000186815, TPCN1, two pore segment channel 1, [RH, Score=197, Expect=2e-52]} {Mouse: ENSMUSG00000032741, Tpcn1, two pore channel 1, [RH, Score=207, Expect=5e-56]} {Dmel: FBgn0001991, Ca-alpha1D, Ca[2+]-channel protein alpha[[1]] subunit D, [Score=73.6, Expect=6e-13]} {Celegans: WBGene00006742, unc-2, High voltage activated calcium channel alpha-1 subunit, [Score=67.4, Expect=3e-11]} {Smed: dd_Smed_v6_8333_0_1, dd_Smed_v6_8333_0_1, [RH, Score=229, Expect=2e-64]} {RNA1509_51248} {RNA1310_6971.1, RNA1509_51248} {RNA1509_51248, RNA815_6160}
6. MligTC455_24662 42 0.88 Mlig455_047950

Neo: -

Age: -

 URGCP 0.974 - - - - 0.974 - Mlig455_047950 {REF} {Length: 5366} {Pfam: Dynamin family [PF00350.25, score=28.9]; Root hair defective 3 GTP-binding protein (RHD3) [PF05879.14, score=25.9]; Guanylate-binding protein, N-terminal domain [PF02263.21, score=24.2]; 50S ribosome-binding GTPase [PF01926.25, score=22.3]} {Human: ENSG00000106608, URGCP, upregulator of cell proliferation, [Score=155, Expect=8e-38]} {Mouse: ENSMUSG00000045868, Gvin1, GTPase, very large interferon inducible 1, [Score=312, Expect=5e-86]; ENSMUSG00000078606, Gm4070, predicted gene 4070, [Score=312, Expect=5e-86]} {RNA1509_25042} {RNA1310_285} {RNA815_97.1}
7. MligTC455_16155 68 1.41 Mlig455_036156

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_036156 {REF} {Length: 824} {NoTransDecoderORF} {RNA1509_16255} {RNA1310_42433.1} {RNA815_22226}
8. MligTC455_37105 54 1.13 Mlig455_057732

Neo: -

Age: -

 ANGPTL1 0.968 - - - - - 0.968 Mlig455_057732 {REF} {Length: 2404} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=107.4]} {Human: ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=94.7, Expect=8e-21]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=90.9, Expect=1e-19]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=92.8, Expect=2e-20]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=90.9, Expect=9e-20]} {Dmel: FBgn0050280, CG30280, [Score=88.6, Expect=6e-20]} {Celegans: WBGene00017013, ensh-1, [Score=61.6, Expect=2e-10]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=85.1, Expect=5e-18]} {RNA1509_49031} {RNA1310_45132} {RNA815_44160}
9. MligTC455_53154 84 1.74 Mlig455_043500

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_043500 {REF} {Length: 1914} {RNA1509_42280} {RNA1310_99128} {RNA815_61343}
10. MligTC455_37337 45 0.94 Mlig455_055736

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.834

 GRIK2 0.967 - - - 0.967 - - Mlig455_055736 {REF} {Length: 3114} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=62.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=48.6]; Ligand-gated ion channel [PF00060.28, score=47.4]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=157, Expect=6e-39]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=159, Expect=1e-39]} {Dmel: FBgn0038837, CG3822, [Score=152, Expect=2e-37]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=134, Expect=7e-32]} {Smed: dd_Smed_v6_8816_0_1, dd_Smed_v6_8816_0_1, [Score=144, Expect=2e-35]} {RNA1509_28307} {RNA1310_720.1} {RNA815_4149.1}
11. MligTC455_51915 16 0.33 Mlig455_012053

Neo: -

Age: Up-Down-Up

 0.967 - - - - 0.967 - Mlig455_012053 {REF} {Length: 1746} {TRANSSPLICED} {RNA1509_41350} {RNA1310_32126} {RNA815_14123.1}
12. MligTC455_39561 102 2.12 Mlig455_031901

Neo: -

Age: -

 0.964 - - - - - 0.964 Mlig455_031901 {REF} {Length: 924} {NoTransDecoderORF} {RNA1509_55593} {RNA1310_40473} {RNA815_20507}
13. MligTC455_42890 236 4.91 Mlig455_022504

Neo: -

Age: logFC(26M/2M)=-0.269

Region-enriched R4: 2.592/0.03886

 NOTCH1 0.958 - - - - - 0.958 Mlig455_022504 {REF} {Length: 3820} {Pfam: Calcium-binding EGF domain [PF07645.17, score=77.2]; EGF-like domain [PF00008.29, score=65.8]; Delta serrate ligand [PF01414.21, score=41.8]; Human growth factor-like EGF [PF12661.9, score=38.5]; EGF-like domain [PF07974.15, score=26.9]; EGF domain [PF12947.9, score=23.0]} {Human: ENSG00000148400, NOTCH1, notch 1, [Score=134, Expect=6e-32]; ENSG00000165124, SVEP1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=132, Expect=2e-31]} {Mouse: ENSMUSG00000026923, Notch1, notch 1, [Score=130, Expect=5e-31]; ENSMUSG00000014773, Dll1, delta like canonical Notch ligand 1, [Score=129, Expect=6e-31]; ENSMUSG00000036766, Dner, delta/notch-like EGF repeat containing, [Score=127, Expect=3e-30]; ENSMUSG00000028369, Svep1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=126, Expect=1e-29]; ENSMUSG00000027878, Notch2, notch 2, [Score=125, Expect=3e-29]} {Dmel: FBgn0004647, N, Notch, [Score=134, Expect=3e-32]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=119, Expect=2e-27]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=119, Expect=7e-28]} {RNA1509_36279} {RNA1310_12661} {RNA815_3995.1}
14. MligTC455_00517 14 0.3 Mlig455_030063

Neo: -

Age: -

Regeneration-enriched R4: 7.437
Regeneration-enriched R3: 7.435
Regeneration-enriched R6: 7.315

 0.957 - - - - 0.957 - Mlig455_030063 {REF} {Length: 1513} {RNA1509_5594} {RNA1310_99804} {RNA815_59053.1}
15. MligTC455_19837 100 2.07 Mlig455_050340

Neo: -

Age: -

 0.956 - - - 0.956 - - Mlig455_050340 {REF} {Length: 2400} {Pfam: Laminin G domain [PF02210.26, score=22.2]} {Mouse: ENSMUSG00000038048, Cntnap5c, contactin associated protein-like 5C, [Score=56.2, Expect=4e-08]; ENSMUSG00000070695, Cntnap5a, contactin associated protein-like 5A, [Score=54.7, Expect=1e-07]} {RNA1509_35128} {RNA1310_8604} {RNA815_4859}
16. MligTC455_08237 7 0.15 Mlig455_032716

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_032716 {REF} {Length: 497} {NoTransDecoderORF} {RNA1310_85843}
17. MligTC455_52642 710 14.8 Mlig455_061793

Neo: -

Age: -

Region-enriched R7: 2.215/0.00056

 MCFD2 0.953 - - - 0.953 - - Mlig455_061793 {REF} {Length: 1822} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=43.9]; EF-hand domain [PF13405.8, score=35.7]; EF hand [PF00036.34, score=31.2]; EF hand [PF13202.8, score=21.2]; EF-hand domain pair [PF13833.8, score=18.6]} {Human: ENSG00000180398, MCFD2, multiple coagulation factor deficiency 2, [RH, Score=84.0, Expect=6e-21]} {Mouse: ENSMUSG00000024150, Mcfd2, multiple coagulation factor deficiency 2, [RH, Score=80.9, Expect=4e-20]} {Dmel: FBgn0038829, CG17271, [RH, Score=80.1, Expect=1e-18]} {Celegans: WBGene00010075, F55A11.1, [RH, Score=68.2, Expect=6e-15]} {RNA1509_4427} {RNA1310_15266} {RNA815_5930}
18. MligTC455_07523 37 0.76 Mlig455_009295

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_009295 {REF} {Length: 527} {NoTransDecoderORF} {RNA1509_54671} {RNA1310_20601} {RNA815_6311.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA