M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11343

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11343 15 0.32 Mlig455_036195

Neo: -

Age: -

 Mlig455_036195 {REF} {Length: 786} {NoTransDecoderORF} {RNA1310_121576} {RNA815_10011.1}

Cumulative graph for MligTC455_11343

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.274 0.659 0.99984 1.00000
RegionR2 -0.214 0.659 0.99981 1.00000
RegionR3 0.913 0.659 0.99992 1.00000
RegionR4 0.354 0.659 0.99987 1.00000
RegionR5 0.935 0.659 0.99991 1.00000
RegionR6 0.121 0.659 1.00000 1.00000
RegionR7 -0.236 0.659 1.00000 1.00000
RegionR8 -0.597 0.659 0.99993 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.562 0.659 0.99992 1.00000
RegenerationR2 0.205 0.659 0.60246 0.91692
RegenerationR3 1.12 0.659 0.36426 0.77981
RegenerationR4 1.423 0.659 0.30530 0.74680
RegenerationR5 1.217 0.659 0.33895 0.75700
RegenerationR6 3.052 0.659 0.13794 0.45570
RegenerationBL -0.774 0.659 0.99998 1.00000
RegenerationTP 2.785 0.659 0.47551 0.88478


Genes with expression patterns similar to MligTC455_11343

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11343 15 0.32 Mlig455_036195

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_036195 {REF} {Length: 786} {NoTransDecoderORF} {RNA1310_121576} {RNA815_10011.1}
2. MligTC455_25460 203 4.23 Mlig455_017949

Neo: Irradiation

Age: -

 UTP25 0.99 - - - 0.990 - - Mlig455_017949 {REF} {Length: 2589} {TRANSSPLICED} {Pfam: Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 [PF06862.14, score=383.4]; DEAD/DEAH box helicase [PF00270.31, score=19.0]} {Human: ENSG00000117597, UTP25, UTP25, small subunit processor component, [RH, Score=293, Expect=4e-89]} {Mouse: ENSMUSG00000016181, Diexf, digestive organ expansion factor homolog (zebrafish), [RH, Score=286, Expect=2e-86]} {Dmel: FBgn0034933, CG3735, [RH, Score=253, Expect=1e-74]} {Celegans: WBGene00012756, Y41C4A.9, [RH, Score=191, Expect=4e-53]} {Smed: dd_Smed_v6_9470_0_1, dd_Smed_v6_9470_0_1, [RH, Score=153, Expect=1e-39]} {RNA1509_25312} {RNA1310_17305.1, RNA1509_25312} {RNA1509_25312, RNA815_9754}
3. MligTC455_53273 889 18.52 Mlig455_012632, Mlig455_012652

Neo: -

Age: -

 MPHOSPH8 0.975 - - - - 0.975 -

Mlig455_012632 {REF} {Length: 5039} {TRANSSPLICED} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=42.6]; Ankyrin repeats (3 copies) [PF12796.9, score=27.9]; Ankyrin repeats (many copies) [PF13637.8, score=20.3]; Ankyrin repeat [PF13606.8, score=19.3]} {Human: ENSG00000196199, MPHOSPH8, M-phase phosphoprotein 8, [Score=58.5, Expect=4e-08]} {Mouse: ENSMUSG00000079184, Mphosph8, M-phase phosphoprotein 8, [Score=57.4, Expect=6e-08]} {Smed: dd_Smed_v6_8167_0_1, dd_Smed_v6_8167_0_1, [RH, Score=105, Expect=3e-23]} {RNA1509_15431, RNA1509_35860} {RNA1310_7087, RNA1509_15431, RNA1509_35860} {RNA1509_15431, RNA1509_35860, RNA815_2726}

Mlig455_012652 {REF} {Length: 5025} {TRANSSPLICED} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=42.6]; Ankyrin repeats (3 copies) [PF12796.9, score=30.0]; Ankyrin repeats (many copies) [PF13637.8, score=21.1]; Ankyrin repeat [PF13606.8, score=20.8]} {Human: ENSG00000196199, MPHOSPH8, M-phase phosphoprotein 8, [Score=58.5, Expect=4e-08]} {Mouse: ENSMUSG00000079184, Mphosph8, M-phase phosphoprotein 8, [Score=57.4, Expect=6e-08]} {Smed: dd_Smed_v6_8167_0_1, dd_Smed_v6_8167_0_1, [RH, Score=105, Expect=3e-23]} {RNA1509_15431} {RNA1310_7087} {RNA815_2726}
4. MligTC455_29449 88 1.84 Mlig455_055134

Neo: -

Age: Up-Down-Down

Region-enriched R4: 2.118/0.04706

 0.965 - - - 0.965 - - Mlig455_055134 {REF} {Length: 3438} {Smed: dd_Smed_v6_15433_0_1, dd_Smed_v6_15433_0_1, [Score=42.7, Expect=8e-06]} {RNA1509_50401} {RNA1310_13609} {RNA815_5685.1}
5. MligTC455_15580 8 0.18 Mlig455_016128

Neo: -

Age: -

 0.959 - - - 0.959 - - Mlig455_016128 {REF} {Length: 1492}
6. MligTC455_15888 446 9.29 Mlig455_056804, Mlig455_056842

Neo: Int S/G2/M

Age: -

Region-enriched R5: 2.356/0.00867

 0.959 - - - 0.959 - -

Mlig455_056804 {REF} {Length: 4137} {TRANSSPLICED} {RNA1509_39238} {RNA1310_8991, RNA1509_39238} {RNA1509_39238, RNA815_19267}

Mlig455_056842 {REF} {Length: 2866} {TRANSSPLICED} {RNA1509_39238} {RNA1310_8991} {RNA815_19267}
7. MligTC455_57726 39 0.82 Mlig455_030142

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_030142 {REF} {Length: 234} {NoTransDecoderORF} {RNA1310_117714}
8. MligTC455_34400 19 0.4 Mlig455_015681

Neo: Irradiation

Age: -

 0.956 - - - 0.956 - - Mlig455_015681 {REF} {Length: 2461} {RNA1509_42201} {RNA1310_12457} {RNA815_4461}
9. MligTC455_37768 21 0.43 Mlig455_040181

Neo: -

Age: -

 GIMAP4 0.956 - - - 0.956 - - Mlig455_040181 {REF} {Length: 1622} {Pfam: AIG1 family [PF04548.18, score=121.3]; 50S ribosome-binding GTPase [PF01926.25, score=40.0]; Dynamin family [PF00350.25, score=29.1]; RsgA GTPase [PF03193.18, score=20.8]; AAA ATPase domain [PF13191.8, score=20.8]; ABC transporter [PF00005.29, score=20.7]; AAA domain [PF13476.8, score=19.8]; Ferrous iron transport protein B [PF02421.20, score=19.4]} {Human: ENSG00000133574, GIMAP4, GTPase, IMAP family member 4, [Score=92.8, Expect=1e-20]; ENSG00000179144, GIMAP7, GTPase, IMAP family member 7, [Score=89.4, Expect=1e-19]} {Mouse: ENSMUSG00000051124, Gimap9, GTPase, IMAP family member 9, [Score=92.4, Expect=6e-21]} {Smed: dd_Smed_v6_13631_0_6, dd_Smed_v6_13631_0_6, [RH, Score=51.6, Expect=2e-08]} {RNA1509_8439} {RNA1310_70178} {RNA815_62940}
10. MligTC455_13797 16 0.33 Mlig455_032687

Neo: -

Age: -

Region-enriched R4: 5.327/0.01197

 0.955 - - - 0.955 - - Mlig455_032687 {REF} {Length: 629} {NoTransDecoderORF} {RNA1310_93307.2}
11. MligTC455_09194 22 0.46 Mlig455_033399

Neo: -

Age: -

 GIMAP4 0.953 - - - 0.953 - - Mlig455_033399 {REF} {Length: 1546} {Pfam: AIG1 family [PF04548.18, score=122.9]; 50S ribosome-binding GTPase [PF01926.25, score=42.8]; Dynamin family [PF00350.25, score=29.0]; RsgA GTPase [PF03193.18, score=21.9]; Ferrous iron transport protein B [PF02421.20, score=20.2]} {Human: ENSG00000133574, GIMAP4, GTPase, IMAP family member 4, [Score=95.1, Expect=7e-22]} {Mouse: ENSMUSG00000051124, Gimap9, GTPase, IMAP family member 9, [Score=92.0, Expect=4e-21]; ENSMUSG00000054435, Gimap4, GTPase, IMAP family member 4, [Score=89.4, Expect=6e-20]} {RNA1310_70178}
12. MligTC455_14377 210 4.37 Mlig455_022946, Mlig455_046360, Mlig455_046393

Neo: -

Age: logFC(26M/2M)=-0.362

Region-enriched R6: 6.942/0.00000

 0.953 - - - 0.953 - -

Mlig455_022946 {REF} {Length: 170} {NoTransDecoderORF} {tRNA: Arg(ACG), score=72.3} {RNA1509_29923} {RNA1310_14861.1} {RNA815_5114}

Mlig455_046360 {REF} {Length: 1953} {tRNA: Arg(ACG), score=72.3} {RNA1509_29923} {RNA1310_13935.1} {RNA815_5114}

Mlig455_046393 {REF} {Length: 1824} {tRNA: Arg(ACG), score=72.3} {RNA1509_29923} {RNA1310_14861.1} {RNA815_5114}
13. MligTC455_40137 98 2.05 Mlig455_060068

Neo: -

Age: -

Region-enriched R2: 4.909/0.02205
Region-enriched R3: 3.123/0.04741

 IDNK 0.953 - - - 0.953 - - Mlig455_060068 {REF} {Length: 2173} {TRANSSPLICED} {Pfam: Shikimate kinase [PF01202.24, score=36.3]; AAA domain [PF13671.8, score=30.7]; AAA domain [PF13238.8, score=26.4]; AAA domain [PF13521.8, score=24.3]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=21.5]; AAA domain [PF13207.8, score=20.8]} {Human: ENSG00000148057, IDNK, IDNK, gluconokinase, [RH, Score=126, Expect=2e-36]} {Mouse: ENSMUSG00000050002, Idnk, idnK gluconokinase homolog (E. coli), [RH, Score=132, Expect=3e-39]} {Celegans: WBGene00017818, F26D11.1, Gluconokinase, [RH, Score=127, Expect=2e-37]} {Smed: dd_Smed_v6_14936_0_1, dd_Smed_v6_14936_0_1, [RH, Score=108, Expect=2e-30]} {RNA1509_45489, RNA1509_48460} {RNA1310_24189, RNA1509_45489} {RNA1509_45489, RNA815_32058}
14. MligTC455_09847 49 1.03 Mlig455_008171, Mlig455_008210, Mlig455_069594

Neo: -

Age: Down-Up-Up

 AL031281.2, CDC42 0.951 - - - 0.951 - -

Mlig455_008171 {REF} {Length: 849} {Pfam: Ras family [PF00071.24, score=78.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=32.3]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=140, Expect=2e-41]; ENSG00000070831, CDC42, cell division cycle 42, [Score=140, Expect=2e-41]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=140, Expect=1e-41]} {Dmel: FBgn0010341, Cdc42, [Score=136, Expect=3e-40]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [Score=143, Expect=3e-43]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=122, Expect=5e-35]} {RNA1310_50317} {RNA815_24750}

Mlig455_008210 {REF} {Length: 1780} {Pfam: Ras family [PF00071.24, score=103.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=32.8]} {Human: ENSG00000070831, CDC42, cell division cycle 42, [Score=170, Expect=1e-53]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=170, Expect=1e-53]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=170, Expect=9e-54]} {Dmel: FBgn0010341, Cdc42, [Score=174, Expect=3e-55]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [Score=177, Expect=2e-56]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=159, Expect=8e-50]} {RNA1310_50317} {RNA815_24750}

Mlig455_069594 {REF} {Length: 948} {Pfam: Ras family [PF00071.24, score=35.4]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=85.1, Expect=3e-19]; ENSG00000070831, CDC42, cell division cycle 42, [Score=85.1, Expect=3e-19]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=85.1, Expect=2e-19]} {Dmel: FBgn0010341, Cdc42, [Score=80.1, Expect=9e-18]} {Celegans: WBGene00015646, mlt-10, [Score=164, Expect=7e-46]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=70.1, Expect=3e-14]} {RNA1310_50317} {RNA815_24750}
15. MligTC455_13251 89 1.86 Mlig455_005191

Neo: -

Age: logFC(26M/2M)=-0.503

 0.95 - - - 0.950 - - Mlig455_005191 {REF} {Length: 651} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=36.6]} {Mouse: ENSMUSG00000066279, Chrna10, cholinergic receptor, nicotinic, alpha polypeptide 10, [Score=41.2, Expect=9e-06]} {RNA1509_40279} {RNA1310_35227} {RNA815_50075}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA