M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25460

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25460 203 4.23 Mlig455_017949

Neo: Irradiation

Age: -

 UTP25 Mlig455_017949 {REF} {Length: 2589} {TRANSSPLICED} {Pfam: Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 [PF06862.14, score=383.4]; DEAD/DEAH box helicase [PF00270.31, score=19.0]} {Human: ENSG00000117597, UTP25, UTP25, small subunit processor component, [RH, Score=293, Expect=4e-89]} {Mouse: ENSMUSG00000016181, Diexf, digestive organ expansion factor homolog (zebrafish), [RH, Score=286, Expect=2e-86]} {Dmel: FBgn0034933, CG3735, [RH, Score=253, Expect=1e-74]} {Celegans: WBGene00012756, Y41C4A.9, [RH, Score=191, Expect=4e-53]} {Smed: dd_Smed_v6_9470_0_1, dd_Smed_v6_9470_0_1, [RH, Score=153, Expect=1e-39]} {RNA1509_25312} {RNA1310_17305.1, RNA1509_25312} {RNA1509_25312, RNA815_9754}

Cumulative graph for MligTC455_25460

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.218 2.719 0.44452 1.00000
RegionR2 0.638 2.719 0.39437 0.78877
RegionR3 -0.172 2.719 0.74263 1.00000
RegionR4 -1.441 2.719 0.05355 0.20200
RegionR5 0.678 2.719 0.11418 0.33422
RegionR6 0.292 2.719 0.57551 1.00000
RegionR7 0.329 2.719 0.64563 1.00000
RegionR8 0.894 2.719 0.28188 0.90851

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.506 2.719 0.69132 1.00000
RegenerationR2 -0.106 2.719 0.87795 1.00000
RegenerationR3 0.383 2.719 0.57057 0.89427
RegenerationR4 0.418 2.719 0.56459 0.89903
RegenerationR5 -0.531 2.719 0.38954 0.79180
RegenerationR6 1.164 2.719 0.07833 0.34960
RegenerationBL -0.438 2.719 0.72841 1.00000
RegenerationTP -0.274 2.719 0.79350 1.00000


Genes with expression patterns similar to MligTC455_25460

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25460 203 4.23 Mlig455_017949

Neo: Irradiation

Age: -

 UTP25 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_017949 {REF} {Length: 2589} {TRANSSPLICED} {Pfam: Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 [PF06862.14, score=383.4]; DEAD/DEAH box helicase [PF00270.31, score=19.0]} {Human: ENSG00000117597, UTP25, UTP25, small subunit processor component, [RH, Score=293, Expect=4e-89]} {Mouse: ENSMUSG00000016181, Diexf, digestive organ expansion factor homolog (zebrafish), [RH, Score=286, Expect=2e-86]} {Dmel: FBgn0034933, CG3735, [RH, Score=253, Expect=1e-74]} {Celegans: WBGene00012756, Y41C4A.9, [RH, Score=191, Expect=4e-53]} {Smed: dd_Smed_v6_9470_0_1, dd_Smed_v6_9470_0_1, [RH, Score=153, Expect=1e-39]} {RNA1509_25312} {RNA1310_17305.1, RNA1509_25312} {RNA1509_25312, RNA815_9754}
2. MligTC455_25459 205 4.27 Mlig455_006934

Neo: -

Age: logFC(26M/2M)=0.256

 UTP25 4.795 0.999 1.000 - 0.859 0.943 0.994 Mlig455_006934 {REF} {Length: 5391} {TRANSSPLICED} {Pfam: Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 [PF06862.14, score=379.9]; Acyl-CoA dehydrogenase, middle domain [PF02770.21, score=51.1]; Acyl-CoA oxidase [PF01756.21, score=46.0]; Acyl-CoA dehydrogenase, C-terminal domain [PF00441.26, score=32.0]; TFIIS helical bundle-like domain [PF08711.13, score=25.9]} {Human: ENSG00000117597, UTP25, UTP25, small subunit processor component, [RH, Score=291, Expect=5e-83]} {Mouse: ENSMUSG00000016181, Diexf, digestive organ expansion factor homolog (zebrafish), [RH, Score=284, Expect=1e-80]} {Dmel: FBgn0034933, CG3735, [RH, Score=252, Expect=1e-70]} {Celegans: WBGene00012756, Y41C4A.9, [RH, Score=192, Expect=2e-51]} {Smed: dd_Smed_v6_3270_0_1, dd_Smed_v6_3270_0_1, [RH, Score=649, Expect=0.0]} {RNA1509_3625} {RNA1310_12756.1} {RNA815_4520}
3. MligTC455_11343 15 0.32 Mlig455_036195

Neo: -

Age: -

 0.99 - - - 0.990 - - Mlig455_036195 {REF} {Length: 786} {NoTransDecoderORF} {RNA1310_121576} {RNA815_10011.1}
4. MligTC455_26007 9 0.19 Mlig455_045232

Neo: -

Age: Down-Down-Up

 0.964 - - - 0.964 - - Mlig455_045232 {REF} {Length: 1794} {RNA1509_3271} {RNA1310_35152.1} {RNA815_5895}
5. MligTC455_57726 39 0.82 Mlig455_030142

Neo: -

Age: -

 0.964 - - - 0.964 - - Mlig455_030142 {REF} {Length: 234} {NoTransDecoderORF} {RNA1310_117714}
6. MligTC455_22023 338 7.03 Mlig455_046682

Neo: -

Age: -

 BMI1 0.96 - - - - 0.960 - Mlig455_046682 {REF} {Length: 3035} {TRANSSPLICED} {Pfam: RAWUL domain RING finger- and WD40-associated ubiquitin-like [PF16207.7, score=40.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.9]; Ring finger domain [PF13639.8, score=24.3]; RING-type zinc-finger [PF13445.8, score=22.5]; zinc-RING finger domain [PF14634.8, score=21.8]; Autophagy protein Atg8 ubiquitin like [PF02991.18, score=19.0]} {Human: ENSG00000168283, BMI1, BMI1 proto-oncogene, polycomb ring finger, [RH, Score=226, Expect=5e-72]; ENSG00000269897, COMMD3-BMI1, COMMD3-BMI1 readthrough, [RH, Score=226, Expect=2e-70]} {Mouse: ENSMUSG00000026739, Bmi1, Bmi1 polycomb ring finger oncogene, [RH, Score=221, Expect=2e-70]} {Dmel: FBgn0005624, Psc, Posterior sex combs, [RH, Score=165, Expect=1e-45]} {Celegans: WBGene00008684, mig-32, [Score=91.3, Expect=2e-20]} {Smed: dd_Smed_v6_12753_0_1, dd_Smed_v6_12753_0_1, [RH, Score=168, Expect=1e-50]} {RNA1509_51655} {RNA1310_33482.1, RNA1509_51655} {RNA1509_51655, RNA815_18976}
7. MligTC455_28355 294 6.12 Mlig455_004369

Neo: -

Age: Up-Down-Up

 0.957 - - - - - 0.957 Mlig455_004369 {REF} {Length: 4652} {TRANSSPLICED} {Pfam: Wolframin cysteine-rich domain [PF20053.1, score=73.1]; Wolframin C-terminal OB-fold domain [PF19913.1, score=32.7]} {RNA1509_20192} {RNA1310_15643, RNA1509_20192} {RNA1509_20192, RNA815_12266}
8. MligTC455_38393 151 3.15 Mlig455_066602

Neo: -

Age: -

Region-enriched R6: 6.635/0.00000

 ADAMTS8 0.956 - - - 0.956 - - Mlig455_066602 {REF} {Length: 1768} {Pfam: Reprolysin (M12B) family zinc metalloprotease [PF01421.21, score=42.1]; Metallo-peptidase family M12B Reprolysin-like [PF13582.8, score=27.8]; Metallo-peptidase family M12 [PF13688.8, score=26.5]; Metallo-peptidase family M12B Reprolysin-like [PF13574.8, score=21.4]} {Human: ENSG00000134917, ADAMTS8, ADAM metallopeptidase with thrombospondin type 1 motif 8, [Score=59.3, Expect=9e-09]} {Mouse: ENSMUSG00000031994, Adamts8, a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8, [Score=59.7, Expect=4e-09]} {Celegans: WBGene00020567, T19D2.1, [Score=66.2, Expect=2e-11]} {RNA1509_41739} {RNA1310_5612} {RNA815_2636.1}
9. MligTC455_09847 49 1.03 Mlig455_008171, Mlig455_008210, Mlig455_069594

Neo: -

Age: Down-Up-Up

 AL031281.2, CDC42 0.955 - - - 0.955 - -

Mlig455_008171 {REF} {Length: 849} {Pfam: Ras family [PF00071.24, score=78.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=32.3]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=140, Expect=2e-41]; ENSG00000070831, CDC42, cell division cycle 42, [Score=140, Expect=2e-41]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=140, Expect=1e-41]} {Dmel: FBgn0010341, Cdc42, [Score=136, Expect=3e-40]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [Score=143, Expect=3e-43]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=122, Expect=5e-35]} {RNA1310_50317} {RNA815_24750}

Mlig455_008210 {REF} {Length: 1780} {Pfam: Ras family [PF00071.24, score=103.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=32.8]} {Human: ENSG00000070831, CDC42, cell division cycle 42, [Score=170, Expect=1e-53]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=170, Expect=1e-53]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=170, Expect=9e-54]} {Dmel: FBgn0010341, Cdc42, [Score=174, Expect=3e-55]} {Celegans: WBGene00000390, cdc-42, Cell division control protein 42 homolog, [Score=177, Expect=2e-56]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=159, Expect=8e-50]} {RNA1310_50317} {RNA815_24750}

Mlig455_069594 {REF} {Length: 948} {Pfam: Ras family [PF00071.24, score=35.4]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=85.1, Expect=3e-19]; ENSG00000070831, CDC42, cell division cycle 42, [Score=85.1, Expect=3e-19]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=85.1, Expect=2e-19]} {Dmel: FBgn0010341, Cdc42, [Score=80.1, Expect=9e-18]} {Celegans: WBGene00015646, mlt-10, [Score=164, Expect=7e-46]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=70.1, Expect=3e-14]} {RNA1310_50317} {RNA815_24750}
10. MligTC455_28354 271 5.64 Mlig455_004294

Neo: -

Age: -

 0.953 - - - - - 0.953 Mlig455_004294 {REF} {Length: 1225} {RNA1509_34039} {RNA1310_34592, RNA1509_34039} {RNA1509_34039, RNA815_39126}
11. MligTC455_31969 34 0.72 Mlig455_014054, Mlig455_015584, Mlig455_068454

Neo: -

Age: -

 0.952 - - - - - 0.952

Mlig455_014054 {REF} {Length: 818} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=42.9]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_14744.1}

Mlig455_015584 {REF} {Length: 437} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=60.2]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_15609}

Mlig455_068454 {REF} {Length: 2985} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=115.8]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=55.8, Expect=1e-09]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_14744.1}
12. MligTC455_37768 21 0.43 Mlig455_040181

Neo: -

Age: -

 GIMAP4 0.952 - - - 0.952 - - Mlig455_040181 {REF} {Length: 1622} {Pfam: AIG1 family [PF04548.18, score=121.3]; 50S ribosome-binding GTPase [PF01926.25, score=40.0]; Dynamin family [PF00350.25, score=29.1]; RsgA GTPase [PF03193.18, score=20.8]; AAA ATPase domain [PF13191.8, score=20.8]; ABC transporter [PF00005.29, score=20.7]; AAA domain [PF13476.8, score=19.8]; Ferrous iron transport protein B [PF02421.20, score=19.4]} {Human: ENSG00000133574, GIMAP4, GTPase, IMAP family member 4, [Score=92.8, Expect=1e-20]; ENSG00000179144, GIMAP7, GTPase, IMAP family member 7, [Score=89.4, Expect=1e-19]} {Mouse: ENSMUSG00000051124, Gimap9, GTPase, IMAP family member 9, [Score=92.4, Expect=6e-21]} {Smed: dd_Smed_v6_13631_0_6, dd_Smed_v6_13631_0_6, [RH, Score=51.6, Expect=2e-08]} {RNA1509_8439} {RNA1310_70178} {RNA815_62940}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA