M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_11675

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_11675 17 0.35 Mlig455_066692

Neo: -

Age: -

 Mlig455_066692 {REF} {Length: 152} {NoTransDecoderORF} {RNA1509_13206} {RNA1310_17473} {RNA815_11267}

Cumulative graph for MligTC455_11675

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_11675

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_11675 17 0.35 Mlig455_066692

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_066692 {REF} {Length: 152} {NoTransDecoderORF} {RNA1509_13206} {RNA1310_17473} {RNA815_11267}
2. MligTC455_10681 18 0.37 Mlig455_045012

Neo: -

Age: -

 0.991 - - - - 0.991 - Mlig455_045012 {REF} {Length: 573} {RNA1509_59553} {RNA1310_127391} {RNA815_4400}
3. MligTC455_02799 17 0.36 Mlig455_000495

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_000495 {REF} {Length: 1355} {Pfam: RNase H [PF00075.26, score=54.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=24.6]; Reverse transcriptase-like [PF13456.8, score=19.5]} {RNA1509_53488} {RNA1310_124588}
4. MligTC455_08067 17 0.36 Mlig455_000434

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_000434 {REF} {Length: 1283} {Pfam: RNase H [PF00075.26, score=46.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=18.6]} {RNA1509_53488} {RNA1310_124588}
5. MligTC455_37349 17 0.35 Mlig455_024850

Neo: -

Age: -

 0.986 - - - - 0.986 - Mlig455_024850 {REF} {Length: 1247} {Pfam: RNase H [PF00075.26, score=20.7]} {RNA1509_53488} {RNA1310_124588}
6. MligTC455_14622 59 1.23 Mlig455_012377, Mlig455_012796

Neo: -

Age: Up-Down-Down

 IRF2BP2 0.979 - - - - 0.979 -

Mlig455_012377 {REF} {Length: 2731} {TRANSSPLICED} {Pfam: Interferon regulatory factor 2-binding protein zinc finger [PF11261.10, score=99.2]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=21.4]} {Human: ENSG00000168264, IRF2BP2, interferon regulatory factor 2 binding protein 2, [RH, Score=98.2, Expect=4e-21]; ENSG00000119669, IRF2BPL, interferon regulatory factor 2 binding protein like, [RH, Score=97.8, Expect=7e-21]; ENSG00000170604, IRF2BP1, interferon regulatory factor 2 binding protein 1, [RH, Score=94.4, Expect=7e-20]} {Mouse: ENSMUSG00000051495, Irf2bp2, interferon regulatory factor 2 binding protein 2, [RH, Score=98.2, Expect=3e-21]; ENSMUSG00000034168, Irf2bpl, interferon regulatory factor 2 binding protein-like, [RH, Score=97.8, Expect=5e-21]; ENSMUSG00000044030, Irf2bp1, interferon regulatory factor 2 binding protein 1, [RH, Score=94.7, Expect=4e-20]} {Dmel: FBgn0030400, CG11138, [RH, Score=103, Expect=5e-23]} {Celegans: WBGene00010867, tag-260, [RH, Score=102, Expect=5e-23]} {Smed: dd_Smed_v6_18245_0_1, dd_Smed_v6_18245_0_1, [RH, Score=183, Expect=8e-52]} {RNA1310_58279.1} {RNA815_43124}

Mlig455_012796 {REF} {Length: 2721} {TRANSSPLICED} {Pfam: Interferon regulatory factor 2-binding protein zinc finger [PF11261.10, score=98.9]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=20.8]} {Human: ENSG00000168264, IRF2BP2, interferon regulatory factor 2 binding protein 2, [RH, Score=99.8, Expect=2e-21]; ENSG00000119669, IRF2BPL, interferon regulatory factor 2 binding protein like, [RH, Score=99.0, Expect=4e-21]; ENSG00000170604, IRF2BP1, interferon regulatory factor 2 binding protein 1, [RH, Score=95.1, Expect=5e-20]} {Mouse: ENSMUSG00000034168, Irf2bpl, interferon regulatory factor 2 binding protein-like, [RH, Score=99.4, Expect=2e-21]; ENSMUSG00000051495, Irf2bp2, interferon regulatory factor 2 binding protein 2, [RH, Score=99.4, Expect=1e-21]; ENSMUSG00000044030, Irf2bp1, interferon regulatory factor 2 binding protein 1, [RH, Score=95.5, Expect=3e-20]} {Dmel: FBgn0030400, CG11138, [RH, Score=103, Expect=3e-23]} {Celegans: WBGene00010867, tag-260, [RH, Score=103, Expect=2e-23]} {Smed: dd_Smed_v6_18245_0_1, dd_Smed_v6_18245_0_1, [RH, Score=189, Expect=2e-53]} {RNA1310_60081} {RNA815_43124}
7. MligTC455_25489 334 6.97 Mlig455_016250, Mlig455_054237

Neo: -

Age: -

Region-enriched R2: 2.945/0.04675

 TAF9 0.978 - - - - 0.978 -

Mlig455_016250 {REF} {Length: 6026} {TRANSSPLICED} {RNA1509_6307} {RNA1310_717} {RNA815_357}

Mlig455_054237 {REF} {Length: 3764} {TRANSSPLICED} {Pfam: Transcription initiation factor IID, 31kD subunit [PF02291.17, score=126.4]; CENP-S protein [PF15630.8, score=29.2]; Bromodomain associated [PF07524.15, score=22.4]; Centromere kinetochore component CENP-T histone fold [PF15511.8, score=21.2]} {Human: ENSG00000276463, TAF9, TATA-box binding protein associated factor 9, [RH, Score=134, Expect=2e-34]; ENSG00000273841, TAF9, TATA-box binding protein associated factor 9, [RH, Score=134, Expect=2e-34]} {Mouse: ENSMUSG00000078941, Ak6, adenylate kinase 6, [RH, Score=133, Expect=1e-34]; ENSMUSG00000052293, Taf9, TATA-box binding protein associated factor 9, [RH, Score=133, Expect=1e-34]; ENSMUSG00000047242, Taf9b, TATA-box binding protein associated factor 9B, [RH, Score=130, Expect=1e-33]} {Dmel: FBgn0000617, e(y)1, enhancer of yellow 1, [RH, Score=125, Expect=2e-31]} {RNA1509_41643, RNA1509_6307} {RNA1310_717, RNA1509_41643} {RNA1509_41643, RNA815_357}
8. MligTC455_31251 13 0.26 Mlig455_044314

Neo: Irradiation

Age: -

 GABBR2 0.978 - - - - 0.978 - Mlig455_044314 {REF} {Length: 2984} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=134.4]; Receptor family ligand binding region [PF01094.30, score=96.6]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=165, Expect=5e-41]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=164, Expect=5e-41]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=157, Expect=6e-39]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=140, Expect=5e-34]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=78.2, Expect=2e-16]} {RNA1509_26993} {RNA1310_7927.1} {RNA815_4866.1}
9. MligTC455_57200 6 0.12 Mlig455_019328

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_019328 {REF} {Length: 424} {NoTransDecoderORF}
10. MligTC455_38152 19 0.39 Mlig455_037918

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_037918 {REF} {Length: 1280} {Pfam: Phospholipase A2 [PF00068.21, score=80.2]} {Mouse: ENSMUSG00000058908, Pla2g2a, phospholipase A2, group IIA (platelets, synovial fluid), [RH, Score=60.1, Expect=2e-11]} {Celegans: WBGene00007419, C07E3.9, Phospholipase A(2), [RH, Score=66.2, Expect=7e-14]} {RNA1310_94430}
11. MligTC455_08797 17 0.36 Mlig455_035299

Neo: -

Age: -

 PAX8 0.965 - - - - 0.965 - Mlig455_035299 {REF} {Length: 1562} {Pfam: 'Paired box' domain [PF00292.20, score=213.8]; Homeodomain-like domain [PF13565.8, score=25.1]; Homeodomain-like domain [PF13384.8, score=20.8]} {Human: ENSG00000125618, PAX8, paired box 8, [RH, Score=219, Expect=5e-66]; ENSG00000196092, PAX5, paired box 5, [RH, Score=219, Expect=2e-67]; ENSG00000075891, PAX2, paired box 2, [RH, Score=218, Expect=4e-66]} {Mouse: ENSMUSG00000014030, Pax5, paired box 5, [RH, Score=219, Expect=1e-67]; ENSMUSG00000026976, Pax8, paired box 8, [RH, Score=219, Expect=4e-66]; ENSMUSG00000004231, Pax2, paired box 2, [RH, Score=216, Expect=7e-67]} {Dmel: FBgn0005561, sv, shaven, [Score=219, Expect=1e-64]} {Celegans: WBGene00003938, pax-2, PAX (Paired box) transcription factor, [Score=201, Expect=2e-61]} {Smed: dd_Smed_v6_10219_0_1, dd_Smed_v6_10219_0_1, [Score=226, Expect=2e-72]} {RNA1509_42244} {RNA1310_108508}
12. MligTC455_03449 11 0.24 Mlig455_066657

Neo: -

Age: -

 SCNN1B 0.964 - - - - 0.964 - Mlig455_066657 {REF} {Length: 2141} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=195.5]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=80.1, Expect=5e-15]} {Mouse: ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=58.5, Expect=2e-08]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=81.6, Expect=5e-16]} {Smed: dd_Smed_v6_34707_0_1, dd_Smed_v6_34707_0_1, [Score=117, Expect=2e-27]} {RNA1310_36738} {RNA815_32966}
13. MligTC455_15693 13 0.28 Mlig455_027346, Mlig455_066651

Neo: -

Age: -

 0.964 - - - - 0.964 -

Mlig455_027346 {REF} {Length: 803} {Smed: dd_Smed_v6_9777_0_1, dd_Smed_v6_9777_0_1, [Score=125, Expect=2e-34]} {RNA1509_40799} {RNA1310_41666} {RNA815_13749}

Mlig455_066651 {REF} {Length: 1294} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=48.3]} {Smed: dd_Smed_v6_13661_0_2, dd_Smed_v6_13661_0_2, [Score=199, Expect=9e-63]} {RNA1509_40799} {RNA1310_41666} {RNA815_13749}
14. MligTC455_43452 29 0.6 Mlig455_013155

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_013155 {REF} {Length: 920} {Pfam: Lectin C-type domain [PF00059.23, score=25.4]} {Smed: dd_Smed_v6_42798_0_1, dd_Smed_v6_42798_0_1, [Score=57.0, Expect=8e-10]} {RNA1509_20946} {RNA1310_57972} {RNA815_4785.4}
15. MligTC455_25643 32 0.66 Mlig455_011333

Neo: -

Age: -

Regeneration-downregulated R4: -7.180

Regeneration-depleted R4: -7.180

 0.963 - - - - 0.963 - Mlig455_011333 {REF} {Length: 1535} {NoTransDecoderORF} {RNA1509_1087} {RNA1310_46928} {RNA815_29322}
16. MligTC455_51066 526 10.97 Mlig455_044665, Mlig455_044724

Neo: -

Age: Down-Up-Down

Region-enriched R8: 5.381/0.00000

 0.963 - - - - 0.963 -

Mlig455_044665 {REF} {Length: 1268} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975}

Mlig455_044724 {REF} {Length: 1327} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975}
17. MligTC455_40624 40 0.83 Mlig455_051690

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_051690 {REF} {Length: 1138} {NoTransDecoderORF} {RNA1310_134365} {RNA815_53922}
18. MligTC455_18962 688 14.32 Mlig455_027929

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_027929 {REF} {Length: 1285} {RNA1509_18336} {RNA1310_16542.1, RNA1509_18336} {RNA1509_18336, RNA815_28056}
19. MligTC455_01656 16 0.33 Mlig455_040666

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_040666 {REF} {Length: 985} {RNA1509_48613} {RNA1310_29425} {RNA815_35012}
20. MligTC455_09138 28 0.59 Mlig455_006945

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_006945 {REF} {Length: 1198} {NoTransDecoderORF} {RNA1509_53375} {RNA1310_36515.1} {RNA815_36868}
21. MligTC455_23427 305 6.34 Mlig455_001429

Neo: -

Age: Up-Down-Up

 0.958 - - - - 0.958 - Mlig455_001429 {REF} {Length: 513} {NoTransDecoderORF} {RNA1509_47321} {RNA1310_87572, RNA1509_47321} {RNA1509_47321, RNA815_51998}
22. MligTC455_23417 265 5.53 Mlig455_017673, Mlig455_017693, Mlig455_017744, Mlig455_053766

Neo: -

Age: Down-Up-Down

Region-enriched R8: 3.842/0.01617

 SCNN1B, SCNN1G 0.957 - - - - 0.957 -

Mlig455_017673 {REF} {Length: 3361} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=173.7]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=63.2, Expect=1e-09]; ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=62.8, Expect=1e-09]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=58.9, Expect=1e-08]} {Celegans: WBGene00006748, unc-8, Degenerin unc-8, [Score=52.4, Expect=8e-07]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=407, Expect=4e-134]} {RNA1509_47590} {RNA1310_9831.1} {RNA815_24447}

Mlig455_017693 {REF} {Length: 3484} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=173.7]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=63.2, Expect=1e-09]; ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=62.8, Expect=1e-09]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=58.9, Expect=1e-08]} {Celegans: WBGene00006748, unc-8, Degenerin unc-8, [Score=52.4, Expect=8e-07]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=407, Expect=4e-134]} {RNA1509_47590} {RNA1310_9831.1} {RNA815_24447}

Mlig455_017744 {REF} {Length: 4057} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=172.2]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=61.2, Expect=5e-09]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=57.8, Expect=4e-08]} {Celegans: WBGene00006748, unc-8, Degenerin unc-8, [Score=51.2, Expect=3e-06]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=411, Expect=2e-133]} {RNA1509_14736} {RNA1310_9831.1} {RNA815_24447}

Mlig455_053766 {REF} {Length: 3434} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=157.7]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=58.5, Expect=3e-08]; ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=57.8, Expect=5e-08]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=58.2, Expect=2e-08]} {Celegans: WBGene00006748, unc-8, Degenerin unc-8, [Score=52.8, Expect=6e-07]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=352, Expect=4e-113]} {RNA1509_47590} {RNA1310_43224.1} {RNA815_23822}
23. MligTC455_29923 80 1.66 Mlig455_027692

Neo: -

Age: -

 MAP3K19 0.953 - - - - 0.953 - Mlig455_027692 {REF} {Length: 3167} {Pfam: Protein kinase domain [PF00069.27, score=168.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=126.8]; Ankyrin repeats (3 copies) [PF12796.9, score=77.2]; Ankyrin repeats (many copies) [PF13857.8, score=63.1]; Ankyrin repeats (many copies) [PF13637.8, score=61.3]; Ankyrin repeat [PF13606.8, score=42.6]; Ankyrin repeat [PF00023.32, score=36.8]; Fungal protein kinase [PF17667.3, score=26.8]; ABC1 atypical kinase-like domain [PF03109.18, score=19.5]; Kinase-like [PF14531.8, score=19.0]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=134, Expect=1e-32]; ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=128, Expect=8e-30]} {Mouse: ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=124, Expect=1e-28]; ENSMUSG00000028862, Map3k6, mitogen-activated protein kinase kinase kinase 6, [Score=123, Expect=2e-28]} {Dmel: FBgn0024329, Mekk1, [Score=127, Expect=1e-29]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=125, Expect=2e-29]} {Smed: dd_Smed_v6_5198_0_1, dd_Smed_v6_5198_0_1, [Score=114, Expect=5e-26]} {RNA1509_27731} {RNA1310_26361.1} {RNA815_16459}
24. MligTC455_01224 39 0.82 Mlig455_025513

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_025513 {REF} {Length: 240} {NoTransDecoderORF}
25. MligTC455_19037 10 0.21 Mlig455_062313

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_062313 {REF} {Length: 1180} {NoTransDecoderORF} {RNA1509_20257} {RNA1310_115865} {RNA815_5444.1}
26. MligTC455_32460 777 16.19 Mlig455_012616

Neo: -

Age: logFC(26M/2M)=0.288

 BLVRB 0.952 - - - - 0.952 - Mlig455_012616 {REF} {Length: 2230} {TRANSSPLICED} {Pfam: NAD(P)H-binding [PF13460.8, score=113.9]; NmrA-like family [PF05368.15, score=40.8]; Semialdehyde dehydrogenase, NAD binding domain [PF01118.26, score=19.1]} {Human: ENSG00000090013, BLVRB, biliverdin reductase B, [Score=59.7, Expect=2e-10]} {Mouse: ENSMUSG00000040466, Blvrb, biliverdin reductase B (flavin reductase (NADPH)), [RH, Score=62.4, Expect=1e-11]} {RNA1509_43611} {RNA1310_49378} {RNA815_25402}
27. MligTC455_45653 96 2 Mlig455_010906

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_010906 {REF} {Length: 1098} {RNA1509_6080} {RNA1310_201.1} {RNA815_6427.2}
28. MligTC455_22562 62 1.28 Mlig455_004519

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_004519 {REF} {Length: 131} {NoTransDecoderORF} {RNA1310_25912.1} {RNA815_57017}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA