TomoSeq data search

Data search

Results for MligTC455_01656

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_01656	16	0.33	Mlig455_040666	Neo: - Age: -		Mlig455_040666 {REF} {Length: 985} {RNA1509_48613} {RNA1310_29425} {RNA815_35012}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_01656

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.468	0.611	1.00000	1.00000
RegionR2	1.128	0.611	1.00000	1.00000
RegionR3	-0.077	0.611	1.00000	1.00000
RegionR4	-1.593	0.611	0.99977	1.00000
RegionR5	-0.83	0.611	0.99990	1.00000
RegionR6	-0.404	0.611	1.00000	1.00000
RegionR7	0.757	0.611	1.00000	1.00000
RegionR8	1.488	0.611	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.248	0.611	1.00000	1.00000
RegenerationR2	1.688	0.611	1.00000	1.00000
RegenerationR3	-0.119	0.611	0.99989	1.00000
RegenerationR4	1.032	0.611	1.00000	1.00000
RegenerationR5	1.855	0.611	1.00000	1.00000
RegenerationR6	-0.003	0.611	0.99999	1.00000
RegenerationBL	3.132	0.611	1.00000	1.00000
RegenerationTP	-0.8	0.611	1.00000	1.00000

Genes with expression patterns similar to MligTC455_01656

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_01656	16	0.33	Mlig455_040666	Neo: - Age: -		1	-	-	-	-	1.000	-	Mlig455_040666 {REF} {Length: 985} {RNA1509_48613} {RNA1310_29425} {RNA815_35012}
2.	MligTC455_29923	80	1.66	Mlig455_027692	Neo: - Age: -	MAP3K19	0.989	-	-	-	-	0.989	-	Mlig455_027692 {REF} {Length: 3167} {Pfam: Protein kinase domain [PF00069.27, score=168.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=126.8]; Ankyrin repeats (3 copies) [PF12796.9, score=77.2]; Ankyrin repeats (many copies) [PF13857.8, score=63.1]; Ankyrin repeats (many copies) [PF13637.8, score=61.3]; Ankyrin repeat [PF13606.8, score=42.6]; Ankyrin repeat [PF00023.32, score=36.8]; Fungal protein kinase [PF17667.3, score=26.8]; ABC1 atypical kinase-like domain [PF03109.18, score=19.5]; Kinase-like [PF14531.8, score=19.0]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=134, Expect=1e-32]; ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=128, Expect=8e-30]} {Mouse: ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=124, Expect=1e-28]; ENSMUSG00000028862, Map3k6, mitogen-activated protein kinase kinase kinase 6, [Score=123, Expect=2e-28]} {Dmel: FBgn0024329, Mekk1, [Score=127, Expect=1e-29]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=125, Expect=2e-29]} {Smed: dd_Smed_v6_5198_0_1, dd_Smed_v6_5198_0_1, [Score=114, Expect=5e-26]} {RNA1509_27731} {RNA1310_26361.1} {RNA815_16459}
3.	MligTC455_14622	59	1.23	Mlig455_012377, Mlig455_012796	Neo: - Age: Up-Down-Down	IRF2BP2	0.981	-	-	-	-	0.981	-	Mlig455_012377 {REF} {Length: 2731} {TRANSSPLICED} {Pfam: Interferon regulatory factor 2-binding protein zinc finger [PF11261.10, score=99.2]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=21.4]} {Human: ENSG00000168264, IRF2BP2, interferon regulatory factor 2 binding protein 2, [RH, Score=98.2, Expect=4e-21]; ENSG00000119669, IRF2BPL, interferon regulatory factor 2 binding protein like, [RH, Score=97.8, Expect=7e-21]; ENSG00000170604, IRF2BP1, interferon regulatory factor 2 binding protein 1, [RH, Score=94.4, Expect=7e-20]} {Mouse: ENSMUSG00000051495, Irf2bp2, interferon regulatory factor 2 binding protein 2, [RH, Score=98.2, Expect=3e-21]; ENSMUSG00000034168, Irf2bpl, interferon regulatory factor 2 binding protein-like, [RH, Score=97.8, Expect=5e-21]; ENSMUSG00000044030, Irf2bp1, interferon regulatory factor 2 binding protein 1, [RH, Score=94.7, Expect=4e-20]} {Dmel: FBgn0030400, CG11138, [RH, Score=103, Expect=5e-23]} {Celegans: WBGene00010867, tag-260, [RH, Score=102, Expect=5e-23]} {Smed: dd_Smed_v6_18245_0_1, dd_Smed_v6_18245_0_1, [RH, Score=183, Expect=8e-52]} {RNA1310_58279.1} {RNA815_43124} Mlig455_012796 {REF} {Length: 2721} {TRANSSPLICED} {Pfam: Interferon regulatory factor 2-binding protein zinc finger [PF11261.10, score=98.9]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=20.8]} {Human: ENSG00000168264, IRF2BP2, interferon regulatory factor 2 binding protein 2, [RH, Score=99.8, Expect=2e-21]; ENSG00000119669, IRF2BPL, interferon regulatory factor 2 binding protein like, [RH, Score=99.0, Expect=4e-21]; ENSG00000170604, IRF2BP1, interferon regulatory factor 2 binding protein 1, [RH, Score=95.1, Expect=5e-20]} {Mouse: ENSMUSG00000034168, Irf2bpl, interferon regulatory factor 2 binding protein-like, [RH, Score=99.4, Expect=2e-21]; ENSMUSG00000051495, Irf2bp2, interferon regulatory factor 2 binding protein 2, [RH, Score=99.4, Expect=1e-21]; ENSMUSG00000044030, Irf2bp1, interferon regulatory factor 2 binding protein 1, [RH, Score=95.5, Expect=3e-20]} {Dmel: FBgn0030400, CG11138, [RH, Score=103, Expect=3e-23]} {Celegans: WBGene00010867, tag-260, [RH, Score=103, Expect=2e-23]} {Smed: dd_Smed_v6_18245_0_1, dd_Smed_v6_18245_0_1, [RH, Score=189, Expect=2e-53]} {RNA1310_60081} {RNA815_43124}
4.	MligTC455_38152	19	0.39	Mlig455_037918	Neo: - Age: -		0.969	-	-	-	-	0.969	-	Mlig455_037918 {REF} {Length: 1280} {Pfam: Phospholipase A2 [PF00068.21, score=80.2]} {Mouse: ENSMUSG00000058908, Pla2g2a, phospholipase A2, group IIA (platelets, synovial fluid), [RH, Score=60.1, Expect=2e-11]} {Celegans: WBGene00007419, C07E3.9, Phospholipase A(2), [RH, Score=66.2, Expect=7e-14]} {RNA1310_94430}
5.	MligTC455_57200	6	0.12	Mlig455_019328	Neo: - Age: -		0.968	-	-	-	-	0.968	-	Mlig455_019328 {REF} {Length: 424} {NoTransDecoderORF}
6.	MligTC455_03449	11	0.24	Mlig455_066657	Neo: - Age: -	SCNN1B	0.965	-	-	-	-	0.965	-	Mlig455_066657 {REF} {Length: 2141} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=195.5]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=80.1, Expect=5e-15]} {Mouse: ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=58.5, Expect=2e-08]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=81.6, Expect=5e-16]} {Smed: dd_Smed_v6_34707_0_1, dd_Smed_v6_34707_0_1, [Score=117, Expect=2e-27]} {RNA1310_36738} {RNA815_32966}
7.	MligTC455_09519	28	0.57	Mlig455_051323	Neo: - Age: -		0.964	-	-	-	-	0.964	-	Mlig455_051323 {REF} {Length: 1035} {NoTransDecoderORF} {RNA1310_64669}
8.	MligTC455_02517	94	1.97	Mlig455_053877	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.852 Region-enriched R4: 4.874/0.00145		0.963	-	-	-	-	0.963	-	Mlig455_053877 {REF} {Length: 3912} {RNA1509_29842, RNA1509_40701, RNA1509_48680} {RNA1310_31370.1, RNA1509_29842, RNA1509_40701, RNA1509_48680} {RNA1509_29842, RNA1509_40701, RNA1509_48680, RNA815_11432}
9.	MligTC455_02799	17	0.36	Mlig455_000495	Neo: - Age: -		0.96	-	-	-	-	0.960	-	Mlig455_000495 {REF} {Length: 1355} {Pfam: RNase H [PF00075.26, score=54.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=24.6]; Reverse transcriptase-like [PF13456.8, score=19.5]} {RNA1509_53488} {RNA1310_124588}
10.	MligTC455_08067	17	0.36	Mlig455_000434	Neo: - Age: -		0.96	-	-	-	-	0.960	-	Mlig455_000434 {REF} {Length: 1283} {Pfam: RNase H [PF00075.26, score=46.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=18.6]} {RNA1509_53488} {RNA1310_124588}
11.	MligTC455_10681	18	0.37	Mlig455_045012	Neo: - Age: -		0.96	-	-	-	-	0.960	-	Mlig455_045012 {REF} {Length: 573} {RNA1509_59553} {RNA1310_127391} {RNA815_4400}
12.	MligTC455_40624	40	0.83	Mlig455_051690	Neo: - Age: -		0.96	-	-	-	-	0.960	-	Mlig455_051690 {REF} {Length: 1138} {NoTransDecoderORF} {RNA1310_134365} {RNA815_53922}
13.	MligTC455_37349	17	0.35	Mlig455_024850	Neo: - Age: -		0.959	-	-	-	-	0.959	-	Mlig455_024850 {REF} {Length: 1247} {Pfam: RNase H [PF00075.26, score=20.7]} {RNA1509_53488} {RNA1310_124588}
14.	MligTC455_11675	17	0.35	Mlig455_066692	Neo: - Age: -		0.958	-	-	-	-	0.958	-	Mlig455_066692 {REF} {Length: 152} {NoTransDecoderORF} {RNA1509_13206} {RNA1310_17473} {RNA815_11267}
15.	MligTC455_25643	32	0.66	Mlig455_011333	Neo: - Age: - Regeneration-downregulated R4: -7.180 Regeneration-depleted R4: -7.180		0.958	-	-	-	-	0.958	-	Mlig455_011333 {REF} {Length: 1535} {NoTransDecoderORF} {RNA1509_1087} {RNA1310_46928} {RNA815_29322}
16.	MligTC455_31251	13	0.26	Mlig455_044314	Neo: Irradiation Age: -	GABBR2	0.957	-	-	-	-	0.957	-	Mlig455_044314 {REF} {Length: 2984} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=134.4]; Receptor family ligand binding region [PF01094.30, score=96.6]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=165, Expect=5e-41]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=164, Expect=5e-41]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=157, Expect=6e-39]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=140, Expect=5e-34]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=78.2, Expect=2e-16]} {RNA1509_26993} {RNA1310_7927.1} {RNA815_4866.1}
17.	MligTC455_13723	13	0.28	Mlig455_041223	Neo: - Age: -		0.956	-	-	-	-	0.956	-	Mlig455_041223 {REF} {Length: 2128} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=45.3]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=32.9]} {Smed: dd_Smed_v6_14726_0_1, dd_Smed_v6_14726_0_1, [Score=85.9, Expect=1e-18]} {RNA1310_95524.1} {RNA815_48018}
18.	MligTC455_53321	59	1.24	Mlig455_046286	Neo: - Age: - Region-enriched R4: 6.404/0.01336		0.956	-	-	-	-	0.956	-	Mlig455_046286 {REF} {Length: 1085} {RNA1509_49086} {RNA1310_87385, RNA1509_49086}
19.	MligTC455_51066	526	10.97	Mlig455_044665, Mlig455_044724	Neo: - Age: Down-Up-Down Region-enriched R8: 5.381/0.00000		0.954	-	-	-	-	0.954	-	Mlig455_044665 {REF} {Length: 1268} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975} Mlig455_044724 {REF} {Length: 1327} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975}
20.	MligTC455_41513	118	2.46	Mlig455_036059, Mlig455_054097	Neo: - Age: - Region-enriched R2: 4.413/0.00353 Region-enriched R5: 3.488/0.00024		0.953	-	-	-	-	0.953	-	Mlig455_036059 {REF} {Length: 647} {RNA1310_36899.1} {RNA815_18218} Mlig455_054097 {REF} {Length: 1012} {RNA1310_36899.1} {RNA815_18218}
21.	MligTC455_18355	9	0.2	Mlig455_056270	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_056270 {REF} {Length: 896} {TRANSSPLICED} {RNA1310_132407}