TomoSeq data search

Data search

Results for MligTC455_12771

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_12771	7	0.15	Mlig455_016772, Mlig455_016790	Neo: - Age: -	SNRNP200	Mlig455_016772 {REF} {Length: 3665} {TRANSSPLICED} {Pfam: Sec63 Brl domain [PF02889.18, score=193.2]; N-terminal helicase PWI domain [PF18149.3, score=126.3]; DEAD/DEAH box helicase [PF00270.31, score=100.4]; Type III restriction enzyme, res subunit [PF04851.17, score=53.1]; Helicase conserved C-terminal domain [PF00271.33, score=33.4]} {Human: ENSG00000144028, SNRNP200, small nuclear ribonucleoprotein U5 subunit 200, [RH, Score=1464, Expect=0.0]} {Mouse: ENSMUSG00000003660, Snrnp200, small nuclear ribonucleoprotein 200 (U5), [RH, Score=1463, Expect=0.0]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [RH, Score=1491, Expect=0.0]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [RH, Score=1343, Expect=0.0]} {Smed: dd_Smed_v6_3022_0_1, dd_Smed_v6_3022_0_1, [Score=1068, Expect=0.0]} {RNA1509_1464} {RNA1310_469.1} {RNA815_1013} Mlig455_016790 {REF} {Length: 4734} {TRANSSPLICED} {Pfam: Sec63 Brl domain [PF02889.18, score=191.5]; N-terminal helicase PWI domain [PF18149.3, score=125.4]; DEAD/DEAH box helicase [PF00270.31, score=100.2]; Type III restriction enzyme, res subunit [PF04851.17, score=51.4]; Helicase conserved C-terminal domain [PF00271.33, score=33.3]} {Human: ENSG00000144028, SNRNP200, small nuclear ribonucleoprotein U5 subunit 200, [RH, Score=1432, Expect=0.0]} {Mouse: ENSMUSG00000003660, Snrnp200, small nuclear ribonucleoprotein 200 (U5), [RH, Score=1431, Expect=0.0]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [RH, Score=1460, Expect=0.0]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [RH, Score=1316, Expect=0.0]} {Smed: dd_Smed_v6_3022_0_1, dd_Smed_v6_3022_0_1, [Score=1039, Expect=0.0]} {RNA1509_1464, RNA1509_37558} {RNA1310_469.1, RNA1509_1464, RNA1509_37558} {RNA1509_1464, RNA1509_37558, RNA815_1013}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_12771

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.188	0.584	0.99999	1.00000
RegionR2	2.381	0.584	0.99995	1.00000
RegionR3	0.469	0.584	0.99994	1.00000
RegionR4	-2.494	0.584	0.99984	1.00000
RegionR5	-0.606	0.584	0.99990	1.00000
RegionR6	0.004	0.584	0.99994	1.00000
RegionR7	1.002	0.584	1.00000	1.00000
RegionR8	1.43	0.584	0.99998	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	1.198	0.584	0.99998	1.00000
RegenerationR2	1.346	0.584	0.99989	1.00000
RegenerationR3	2.396	0.584	1.00000	1.00000
RegenerationR4	2.173	0.584	1.00000	1.00000
RegenerationR5	-0.244	0.584	0.99994	1.00000
RegenerationR6	-0.307	0.584	0.99996	1.00000
RegenerationBL	-1.473	0.584	0.99992	1.00000
RegenerationTP	-0.968	0.584	0.99995	1.00000

Genes with expression patterns similar to MligTC455_12771

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_01511	15	0.3	Mlig455_058703	Neo: - Age: -		1	-	-	-	-	1.000	-	Mlig455_058703 {REF} {Length: 181} {NoTransDecoderORF}
2.	MligTC455_12771	7	0.15	Mlig455_016772, Mlig455_016790	Neo: - Age: -	SNRNP200	1	-	-	-	-	1.000	-	Mlig455_016772 {REF} {Length: 3665} {TRANSSPLICED} {Pfam: Sec63 Brl domain [PF02889.18, score=193.2]; N-terminal helicase PWI domain [PF18149.3, score=126.3]; DEAD/DEAH box helicase [PF00270.31, score=100.4]; Type III restriction enzyme, res subunit [PF04851.17, score=53.1]; Helicase conserved C-terminal domain [PF00271.33, score=33.4]} {Human: ENSG00000144028, SNRNP200, small nuclear ribonucleoprotein U5 subunit 200, [RH, Score=1464, Expect=0.0]} {Mouse: ENSMUSG00000003660, Snrnp200, small nuclear ribonucleoprotein 200 (U5), [RH, Score=1463, Expect=0.0]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [RH, Score=1491, Expect=0.0]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [RH, Score=1343, Expect=0.0]} {Smed: dd_Smed_v6_3022_0_1, dd_Smed_v6_3022_0_1, [Score=1068, Expect=0.0]} {RNA1509_1464} {RNA1310_469.1} {RNA815_1013} Mlig455_016790 {REF} {Length: 4734} {TRANSSPLICED} {Pfam: Sec63 Brl domain [PF02889.18, score=191.5]; N-terminal helicase PWI domain [PF18149.3, score=125.4]; DEAD/DEAH box helicase [PF00270.31, score=100.2]; Type III restriction enzyme, res subunit [PF04851.17, score=51.4]; Helicase conserved C-terminal domain [PF00271.33, score=33.3]} {Human: ENSG00000144028, SNRNP200, small nuclear ribonucleoprotein U5 subunit 200, [RH, Score=1432, Expect=0.0]} {Mouse: ENSMUSG00000003660, Snrnp200, small nuclear ribonucleoprotein 200 (U5), [RH, Score=1431, Expect=0.0]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [RH, Score=1460, Expect=0.0]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [RH, Score=1316, Expect=0.0]} {Smed: dd_Smed_v6_3022_0_1, dd_Smed_v6_3022_0_1, [Score=1039, Expect=0.0]} {RNA1509_1464, RNA1509_37558} {RNA1310_469.1, RNA1509_1464, RNA1509_37558} {RNA1509_1464, RNA1509_37558, RNA815_1013}
3.	MligTC455_12554	12	0.26	Mlig455_069558	Neo: - Age: -		0.996	-	-	-	-	0.996	-	Mlig455_069558 {REF} {Length: 568} {NoTransDecoderORF} {RNA1310_126392} {RNA815_61351}
4.	MligTC455_37952	38	0.79	Mlig455_024539	Neo: - Age: -	GNB1L	0.992	-	-	-	-	0.992	-	Mlig455_024539 {REF} {Length: 2044} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=39.4]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=21.4]} {Human: ENSG00000185838, GNB1L, G protein subunit beta 1 like, [RH, Score=110, Expect=3e-27]} {Mouse: ENSMUSG00000000884, Gnb1l, guanine nucleotide binding protein (G protein), beta polypeptide 1-like, [RH, Score=115, Expect=2e-29]} {Dmel: FBgn0033653, CG13192, [RH, Score=74.7, Expect=6e-15]} {Smed: dd_Smed_v6_9087_0_1, dd_Smed_v6_9087_0_1, [RH, Score=68.2, Expect=6e-13]} {RNA1509_25342} {RNA1310_63202} {RNA815_29154}
5.	MligTC455_16736	14	0.3	Mlig455_049515	Neo: - Age: -		0.987	-	-	-	-	0.987	-	Mlig455_049515 {REF} {Length: 1012} {NoTransDecoderORF} {RNA1509_54585} {RNA1310_55558} {RNA815_33420}
6.	MligTC455_09379	6	0.13	Mlig455_014546	Neo: - Age: -		0.986	-	-	-	-	0.986	-	Mlig455_014546 {REF} {Length: 98} {NoTransDecoderORF} {RNA1310_115277}
7.	MligTC455_36131	40	0.83	Mlig455_062116	Neo: - Age: -		0.985	-	-	-	-	0.985	-	Mlig455_062116 {REF} {Length: 4796} {RNA1509_50856} {RNA1310_3723} {RNA815_27362}
8.	MligTC455_37730	19	0.4	Mlig455_020506	Neo: - Age: Down-Up-Down		0.985	-	-	-	-	0.985	-	Mlig455_020506 {REF} {Length: 2657} {RNA1509_51141} {RNA1310_26081.1} {RNA815_15662}
9.	MligTC455_45058	14	0.29	Mlig455_034475	Neo: - Age: Up-Down-Up, logFC(26M/2M)=2.339	SQSTM1	0.983	-	-	-	-	0.983	-	Mlig455_034475 {REF} {Length: 1167} {Pfam: UBA domain [PF16577.7, score=52.2]; PB1 domain [PF00564.26, score=48.6]; Zinc finger, ZZ type [PF00569.19, score=40.7]} {Human: ENSG00000161011, SQSTM1, sequestosome 1, [Score=69.7, Expect=6e-13]; ENSG00000284099, AC008393.2, sequestosome 1, [Score=68.9, Expect=1e-12]} {Mouse: ENSMUSG00000015837, Sqstm1, sequestosome 1, [Score=74.7, Expect=9e-15]} {Dmel: FBgn0037655, Kcmf1, Potassium channel modulatory factor 1, [Score=55.5, Expect=2e-08]} {Celegans: WBGene00015552, C06G3.6, [RH, Score=55.5, Expect=1e-08]} {Smed: dd_Smed_v6_9359_0_1, dd_Smed_v6_9359_0_1, [Score=55.5, Expect=1e-08]} {RNA1509_33599} {RNA1310_24176} {RNA815_29328}
10.	MligTC455_55844	6	0.12	Mlig455_070252	Neo: - Age: -		0.983	-	-	-	-	0.983	-	Mlig455_070252 {REF} {Length: 1766} {Pfam: C2 domain [PF00168.32, score=30.3]} {RNA1310_115466}
11.	MligTC455_11995	76	1.59	Mlig455_057583	Neo: Germline Age: -	CELF3	0.978	-	-	-	-	0.978	-	Mlig455_057583 {REF} {Length: 1910} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=167.1]; RNA recognition motif [PF16367.7, score=23.8]} {Human: ENSG00000159409, CELF3, CUGBP Elav-like family member 3, [RH, Score=400, Expect=8e-136]; ENSG00000161082, CELF5, CUGBP Elav-like family member 5, [RH, Score=395, Expect=1e-133]; ENSG00000273025, AC009690.3, novel transcript, [RH, Score=382, Expect=2e-128]; ENSG00000140488, CELF6, CUGBP Elav-like family member 6, [RH, Score=382, Expect=2e-128]} {Mouse: ENSMUSG00000028137, Celf3, CUGBP, Elav-like family member 3, [RH, Score=399, Expect=1e-134]; ENSMUSG00000024268, Celf4, CUGBP, Elav-like family member 4, [RH, Score=394, Expect=1e-132]; ENSMUSG00000032297, Celf6, CUGBP, Elav-like family member 6, [RH, Score=380, Expect=6e-128]} {Dmel: FBgn0000114, bru1, bruno 1, [RH, Score=322, Expect=1e-101]} {Celegans: WBGene00006807, unc-75, Putative RNA-binding protein, [Score=252, Expect=2e-78]} {Smed: dd_Smed_v6_14010_0_2, dd_Smed_v6_14010_0_2, [RH, Score=399, Expect=8e-135]} {RNA1509_28732} {RNA1310_41106} {RNA815_33683}
12.	MligTC455_39599	28	0.59	Mlig455_051652	Neo: - Age: -	SRSF10	0.973	-	-	-	-	0.973	-	Mlig455_051652 {REF} {Length: 996} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=66.5]} {Human: ENSG00000188529, SRSF10, serine and arginine rich splicing factor 10, [RH, Score=89.7, Expect=2e-20]} {Mouse: ENSMUSG00000028676, Srsf10, serine/arginine-rich splicing factor 10, [RH, Score=89.7, Expect=1e-20]; ENSMUSG00000054679, Srsf12, serine/arginine-rich splicing factor 12, [RH, Score=88.6, Expect=3e-20]} {Dmel: FBgn0263829, CG34334, [Score=64.7, Expect=2e-11]} {Celegans: WBGene00004387, rnp-4, RNA-binding protein 8A, [Score=65.1, Expect=5e-13]} {Smed: dd_Smed_v6_661_0_6, dd_Smed_v6_661_0_6, [RH, Score=102, Expect=1e-27]} {RNA1509_1745} {RNA1310_13715.1} {RNA815_6033.1}
13.	MligTC455_37435	11	0.22	Mlig455_017758	Neo: - Age: Up-Down-Up	LRFN4	0.972	-	-	-	-	0.972	-	Mlig455_017758 {REF} {Length: 4500} {Pfam: Leucine rich repeat [PF13855.8, score=93.8]; Leucine Rich repeats (2 copies) [PF12799.9, score=70.4]; Leucine Rich Repeat [PF00560.35, score=26.5]; Leucine Rich repeat [PF13516.8, score=22.9]} {Human: ENSG00000173621, LRFN4, leucine rich repeat and fibronectin type III domain containing 4, [Score=60.5, Expect=2e-08]} {Mouse: ENSMUSG00000032913, Lrig2, leucine-rich repeats and immunoglobulin-like domains 2, [Score=77.4, Expect=9e-14]} {Dmel: FBgn0261269, conv, convoluted, [Score=70.9, Expect=7e-12]} {Celegans: WBGene00020649, sma-10, Leucine-rich repeats and immunoglobulin-like domains protein sma-10, [Score=72.0, Expect=2e-12]} {Smed: dd_Smed_v6_9666_0_1, dd_Smed_v6_9666_0_1, [Score=59.7, Expect=7e-09]} {RNA1509_18335} {RNA1310_2163} {RNA815_1222}
14.	MligTC455_04533	6	0.12	Mlig455_061121	Neo: - Age: -		0.97	-	-	-	-	0.970	-	Mlig455_061121 {REF} {Length: 633} {NoTransDecoderORF} {RNA1310_60460}
15.	MligTC455_13235	16	0.33	Mlig455_050287	Neo: - Age: -		0.969	-	-	-	-	0.969	-	Mlig455_050287 {REF} {Length: 1473} {RNA1310_130834}
16.	MligTC455_39035	8	0.17	Mlig455_025604	Neo: - Age: -		0.968	-	-	-	-	0.968	-	Mlig455_025604 {REF} {Length: 1988} {NoTransDecoderORF} {RNA1509_51255} {RNA1310_60503} {RNA815_39433}
17.	MligTC455_39912	126	2.62	Mlig455_005780	Neo: - Age: logFC(26M/2M)=0.297	IST1	0.968	-	-	-	-	0.968	-	Mlig455_005780 {REF} {Length: 2185} {Pfam: Regulator of Vps4 activity in the MVB pathway [PF03398.16, score=202.0]} {Human: ENSG00000182149, IST1, IST1, ESCRT-III associated factor, [RH, Score=287, Expect=1e-95]} {Mouse: ENSMUSG00000031729, Ist1, increased sodium tolerance 1 homolog (yeast), [RH, Score=266, Expect=3e-87]} {Dmel: FBgn0035715, CG10103, [RH, Score=248, Expect=2e-79]} {Celegans: WBGene00010736, istr-1, Increased Sodium Tolerance Related, [RH, Score=244, Expect=6e-78]} {Smed: dd_Smed_v6_2006_0_1, dd_Smed_v6_2006_0_1, [RH, Score=287, Expect=2e-96]} {RNA1509_4021} {RNA1310_50949.1} {RNA815_14394.1}
18.	MligTC455_04118	14	0.29	Mlig455_035415	Neo: - Age: -		0.966	-	-	-	-	0.966	-	Mlig455_035415 {REF} {Length: 828} {RNA1310_20357.2} {RNA815_20589}
19.	MligTC455_50339	6	0.13	Mlig455_042694	Neo: - Age: -		0.965	-	-	-	-	0.965	-	Mlig455_042694 {REF} {Length: 427} {NoTransDecoderORF} {RNA1509_18266} {RNA1310_68164} {RNA815_60885}
20.	MligTC455_30469	20	0.42	Mlig455_015547	Neo: - Age: -	NR1D1	0.964	-	-	-	-	0.964	-	Mlig455_015547 {REF} {Length: 7567} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=112.0]} {Human: ENSG00000126368, NR1D1, nuclear receptor subfamily 1 group D member 1, [RH, Score=134, Expect=3e-33]; ENSG00000174738, NR1D2, nuclear receptor subfamily 1 group D member 2, [RH, Score=129, Expect=1e-31]} {Mouse: ENSMUSG00000020889, Nr1d1, nuclear receptor subfamily 1, group D, member 1, [RH, Score=134, Expect=2e-33]} {Dmel: FBgn0004865, Eip78C, Ecdysone-induced protein 78C, [Score=159, Expect=7e-42]} {Celegans: WBGene00004786, sex-1, Steroid hormone receptor family member cnr14, [RH, Score=135, Expect=3e-34]} {Smed: dd_Smed_v6_32297_0_1, dd_Smed_v6_32297_0_1, [Score=106, Expect=4e-26]} {RNA1509_51319} {RNA1310_4731} {RNA815_13419}
21.	MligTC455_29311	38	0.79	Mlig455_036659	Neo: - Age: - Region-enriched R4: 5.181/0.01948 Region-enriched R5: 4.507/0.01647		0.954	-	-	-	-	0.954	-	Mlig455_036659 {REF} {Length: 559} {TRANSSPLICED} {RNA1310_66594.1} {RNA815_40011}
22.	MligTC455_09783	54	1.12	Mlig455_022995	Neo: - Age: - Region-enriched R3: 5.206/0.00082		0.951	-	-	-	-	0.951	-	Mlig455_022995 {REF} {Length: 829} {RNA1509_29350} {RNA1310_47923} {RNA815_6756.1}
23.	MligTC455_10611	8	0.16	Mlig455_039376	Neo: - Age: -		0.951	-	-	-	-	0.951	-	Mlig455_039376 {REF} {Length: 1331} {NoTransDecoderORF} {RNA1310_16437.2} {RNA815_53588}
24.	MligTC455_17126	3	0.06	Mlig455_033793	Neo: - Age: -		0.951	-	-	-	-	0.951	-	Mlig455_033793 {REF} {Length: 471} {NoTransDecoderORF}
25.	MligTC455_17795	8	0.17	Mlig455_070061	Neo: - Age: Down-Down-Up		0.951	-	-	-	-	0.951	-	Mlig455_070061 {REF} {Length: 2709} {TRANSSPLICED} {Pfam: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal [PF12220.10, score=21.2]} {RNA1509_10199} {RNA1310_16210} {RNA815_7019}
26.	MligTC455_28393	77	1.61	Mlig455_041474, Mlig455_041506	Neo: - Age: -		0.951	-	-	-	-	0.951	-	Mlig455_041474 {REF} {Length: 589} {RNA1310_96657} {RNA815_52352} Mlig455_041506 {REF} {Length: 589} {RNA1310_96657} {RNA815_52352}