TomoSeq data search

Data search

Results for MligTC455_11995

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_11995

76

1.59

Mlig455_057583

Age: -

CELF3

Mlig455_057583 {REF} {Length: 1910} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=167.1]; RNA recognition motif [PF16367.7, score=23.8]} {Human: ENSG00000159409, CELF3, CUGBP Elav-like family member 3, [RH, Score=400, Expect=8e-136]; ENSG00000161082, CELF5, CUGBP Elav-like family member 5, [RH, Score=395, Expect=1e-133]; ENSG00000273025, AC009690.3, novel transcript, [RH, Score=382, Expect=2e-128]; ENSG00000140488, CELF6, CUGBP Elav-like family member 6, [RH, Score=382, Expect=2e-128]} {Mouse: ENSMUSG00000028137, Celf3, CUGBP, Elav-like family member 3, [RH, Score=399, Expect=1e-134]; ENSMUSG00000024268, Celf4, CUGBP, Elav-like family member 4, [RH, Score=394, Expect=1e-132]; ENSMUSG00000032297, Celf6, CUGBP, Elav-like family member 6, [RH, Score=380, Expect=6e-128]} {Dmel: FBgn0000114, bru1, bruno 1, [RH, Score=322, Expect=1e-101]} {Celegans: WBGene00006807, unc-75, Putative RNA-binding protein, [Score=252, Expect=2e-78]} {Smed: dd_Smed_v6_14010_0_2, dd_Smed_v6_14010_0_2, [RH, Score=399, Expect=8e-135]} {RNA1509_28732} {RNA1310_41106} {RNA815_33683}

Cumulative graph for MligTC455_11995

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.948	1.923	0.99968	1.00000
RegionR2	1.751	1.923	0.23798	0.61193
RegionR3	1.289	1.923	0.31648	0.85566
RegionR4	2.833	1.923	0.02456	0.11788
RegionR5	-0.356	1.923	0.85627	1.00000
RegionR6	-0.313	1.923	0.85037	1.00000
RegionR7	0.942	1.923	0.53956	1.00000
RegionR8	-3.2	1.923	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.722	1.923	0.99995	1.00000
RegenerationR2	0.55	1.923	0.51275	0.87689
RegenerationR3	0.118	1.923	0.92552	1.00000
RegenerationR4	-0.014	1.923	0.95946	1.00000
RegenerationR5	0.252	1.923	0.79697	0.98778
RegenerationR6	0.877	1.923	0.47956	0.79152
RegenerationBL	0.568	1.923	0.69319	1.00000
RegenerationTP	1.609	1.923	0.49004	0.89547

Genes with expression patterns similar to MligTC455_11995

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_11995	76	1.59	Mlig455_057583	Neo: Germline Age: -	CELF3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_057583 {REF} {Length: 1910} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=167.1]; RNA recognition motif [PF16367.7, score=23.8]} {Human: ENSG00000159409, CELF3, CUGBP Elav-like family member 3, [RH, Score=400, Expect=8e-136]; ENSG00000161082, CELF5, CUGBP Elav-like family member 5, [RH, Score=395, Expect=1e-133]; ENSG00000273025, AC009690.3, novel transcript, [RH, Score=382, Expect=2e-128]; ENSG00000140488, CELF6, CUGBP Elav-like family member 6, [RH, Score=382, Expect=2e-128]} {Mouse: ENSMUSG00000028137, Celf3, CUGBP, Elav-like family member 3, [RH, Score=399, Expect=1e-134]; ENSMUSG00000024268, Celf4, CUGBP, Elav-like family member 4, [RH, Score=394, Expect=1e-132]; ENSMUSG00000032297, Celf6, CUGBP, Elav-like family member 6, [RH, Score=380, Expect=6e-128]} {Dmel: FBgn0000114, bru1, bruno 1, [RH, Score=322, Expect=1e-101]} {Celegans: WBGene00006807, unc-75, Putative RNA-binding protein, [Score=252, Expect=2e-78]} {Smed: dd_Smed_v6_14010_0_2, dd_Smed_v6_14010_0_2, [RH, Score=399, Expect=8e-135]} {RNA1509_28732} {RNA1310_41106} {RNA815_33683}
2.	MligTC455_09379	6	0.13	Mlig455_014546	Neo: - Age: -		0.981	-	-	-	-	0.981	-	Mlig455_014546 {REF} {Length: 98} {NoTransDecoderORF} {RNA1310_115277}
3.	MligTC455_30469	20	0.42	Mlig455_015547	Neo: - Age: -	NR1D1	0.98	-	-	-	-	0.980	-	Mlig455_015547 {REF} {Length: 7567} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=112.0]} {Human: ENSG00000126368, NR1D1, nuclear receptor subfamily 1 group D member 1, [RH, Score=134, Expect=3e-33]; ENSG00000174738, NR1D2, nuclear receptor subfamily 1 group D member 2, [RH, Score=129, Expect=1e-31]} {Mouse: ENSMUSG00000020889, Nr1d1, nuclear receptor subfamily 1, group D, member 1, [RH, Score=134, Expect=2e-33]} {Dmel: FBgn0004865, Eip78C, Ecdysone-induced protein 78C, [Score=159, Expect=7e-42]} {Celegans: WBGene00004786, sex-1, Steroid hormone receptor family member cnr14, [RH, Score=135, Expect=3e-34]} {Smed: dd_Smed_v6_32297_0_1, dd_Smed_v6_32297_0_1, [Score=106, Expect=4e-26]} {RNA1509_51319} {RNA1310_4731} {RNA815_13419}
4.	MligTC455_12771	7	0.15	Mlig455_016772, Mlig455_016790	Neo: - Age: -	SNRNP200	0.978	-	-	-	-	0.978	-	Mlig455_016772 {REF} {Length: 3665} {TRANSSPLICED} {Pfam: Sec63 Brl domain [PF02889.18, score=193.2]; N-terminal helicase PWI domain [PF18149.3, score=126.3]; DEAD/DEAH box helicase [PF00270.31, score=100.4]; Type III restriction enzyme, res subunit [PF04851.17, score=53.1]; Helicase conserved C-terminal domain [PF00271.33, score=33.4]} {Human: ENSG00000144028, SNRNP200, small nuclear ribonucleoprotein U5 subunit 200, [RH, Score=1464, Expect=0.0]} {Mouse: ENSMUSG00000003660, Snrnp200, small nuclear ribonucleoprotein 200 (U5), [RH, Score=1463, Expect=0.0]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [RH, Score=1491, Expect=0.0]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [RH, Score=1343, Expect=0.0]} {Smed: dd_Smed_v6_3022_0_1, dd_Smed_v6_3022_0_1, [Score=1068, Expect=0.0]} {RNA1509_1464} {RNA1310_469.1} {RNA815_1013} Mlig455_016790 {REF} {Length: 4734} {TRANSSPLICED} {Pfam: Sec63 Brl domain [PF02889.18, score=191.5]; N-terminal helicase PWI domain [PF18149.3, score=125.4]; DEAD/DEAH box helicase [PF00270.31, score=100.2]; Type III restriction enzyme, res subunit [PF04851.17, score=51.4]; Helicase conserved C-terminal domain [PF00271.33, score=33.3]} {Human: ENSG00000144028, SNRNP200, small nuclear ribonucleoprotein U5 subunit 200, [RH, Score=1432, Expect=0.0]} {Mouse: ENSMUSG00000003660, Snrnp200, small nuclear ribonucleoprotein 200 (U5), [RH, Score=1431, Expect=0.0]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [RH, Score=1460, Expect=0.0]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [RH, Score=1316, Expect=0.0]} {Smed: dd_Smed_v6_3022_0_1, dd_Smed_v6_3022_0_1, [Score=1039, Expect=0.0]} {RNA1509_1464, RNA1509_37558} {RNA1310_469.1, RNA1509_1464, RNA1509_37558} {RNA1509_1464, RNA1509_37558, RNA815_1013}
5.	MligTC455_16736	14	0.3	Mlig455_049515	Neo: - Age: -		0.978	-	-	-	-	0.978	-	Mlig455_049515 {REF} {Length: 1012} {NoTransDecoderORF} {RNA1509_54585} {RNA1310_55558} {RNA815_33420}
6.	MligTC455_01511	15	0.3	Mlig455_058703	Neo: - Age: -		0.977	-	-	-	-	0.977	-	Mlig455_058703 {REF} {Length: 181} {NoTransDecoderORF}
7.	MligTC455_36131	40	0.83	Mlig455_062116	Neo: - Age: -		0.973	-	-	-	-	0.973	-	Mlig455_062116 {REF} {Length: 4796} {RNA1509_50856} {RNA1310_3723} {RNA815_27362}
8.	MligTC455_38725	127	2.64	Mlig455_056034, Mlig455_056035, Mlig455_057470	Neo: Germline Age: Up-Down-Down Region-enriched R8: 4.838/0.00621 Region-enriched R4: 3.372/0.02148		0.973	-	-	-	0.973	-	-	Mlig455_056034 {REF} {Length: 7277} {RNA1509_53143} {RNA1310_12315.1, RNA1509_53143} {RNA1509_53143, RNA815_17743} Mlig455_056035 {REF} {Length: 1102} {NoTransDecoderORF} {RNA1310_122192} Mlig455_057470 {REF} {Length: 7810} {TRANSSPLICED} {RNA1509_52122, RNA1509_53143} {RNA1310_12315.1, RNA1509_52122} {RNA1509_52122, RNA815_17743}
9.	MligTC455_39035	8	0.17	Mlig455_025604	Neo: - Age: -		0.973	-	-	-	-	0.973	-	Mlig455_025604 {REF} {Length: 1988} {NoTransDecoderORF} {RNA1509_51255} {RNA1310_60503} {RNA815_39433}
10.	MligTC455_37952	38	0.79	Mlig455_024539	Neo: - Age: -	GNB1L	0.969	-	-	-	-	0.969	-	Mlig455_024539 {REF} {Length: 2044} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=39.4]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=21.4]} {Human: ENSG00000185838, GNB1L, G protein subunit beta 1 like, [RH, Score=110, Expect=3e-27]} {Mouse: ENSMUSG00000000884, Gnb1l, guanine nucleotide binding protein (G protein), beta polypeptide 1-like, [RH, Score=115, Expect=2e-29]} {Dmel: FBgn0033653, CG13192, [RH, Score=74.7, Expect=6e-15]} {Smed: dd_Smed_v6_9087_0_1, dd_Smed_v6_9087_0_1, [RH, Score=68.2, Expect=6e-13]} {RNA1509_25342} {RNA1310_63202} {RNA815_29154}
11.	MligTC455_30721	94	1.96	Mlig455_047945	Neo: - Age: -	SCP2	0.967	-	-	-	0.967	-	-	Mlig455_047945 {REF} {Length: 2552} {TRANSSPLICED} {Pfam: Thiolase, C-terminal domain [PF02803.20, score=29.8]; Thiolase, N-terminal domain [PF00108.25, score=26.7]} {Human: ENSG00000116171, SCP2, sterol carrier protein 2, [Score=251, Expect=3e-77]} {Mouse: ENSMUSG00000028603, Scp2, sterol carrier protein 2, liver, [Score=259, Expect=1e-80]} {Dmel: FBgn0032715, CG17597, [Score=279, Expect=8e-90]} {Celegans: WBGene00013284, daf-22, Non-specific lipid-transfer protein-like 2, [Score=222, Expect=6e-68]} {Smed: dd_Smed_v6_2892_0_1, dd_Smed_v6_2892_0_1, [Score=263, Expect=9e-84]} {RNA1509_28112} {RNA1310_20701.2, RNA1509_28112} {RNA1509_28112, RNA815_12561}
12.	MligTC455_07584	12	0.26	Mlig455_004930	Neo: - Age: -		0.964	-	-	-	-	0.964	-	Mlig455_004930 {REF} {Length: 958} {NoTransDecoderORF} {RNA1310_118817}
13.	MligTC455_12554	12	0.26	Mlig455_069558	Neo: - Age: -		0.961	-	-	-	-	0.961	-	Mlig455_069558 {REF} {Length: 568} {NoTransDecoderORF} {RNA1310_126392} {RNA815_61351}
14.	MligTC455_50339	6	0.13	Mlig455_042694	Neo: - Age: -		0.959	-	-	-	-	0.959	-	Mlig455_042694 {REF} {Length: 427} {NoTransDecoderORF} {RNA1509_18266} {RNA1310_68164} {RNA815_60885}
15.	MligTC455_15741	105	2.19	Mlig455_039981	Neo: - Age: Down-Up-Up		0.955	-	-	-	-	-	0.955	Mlig455_039981 {REF} {Length: 1510} {Pfam: AMP-binding enzyme [PF00501.30, score=18.9]} {RNA1509_21701} {RNA1310_34458} {RNA815_5254}
16.	MligTC455_13557	20	0.43	Mlig455_020342, Mlig455_041283	Neo: - Age: -	ASIC1	0.954	-	-	-	0.954	-	-	Mlig455_020342 {REF} {Length: 4002} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=135.3]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=67.4, Expect=2e-11]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=59.3, Expect=4e-09]} {Celegans: WBGene00003174, mec-10, Degenerin mec-10, [Score=65.1, Expect=3e-11]} {Smed: dd_Smed_v6_12037_0_1, dd_Smed_v6_12037_0_1, [Score=72.4, Expect=1e-13]} {RNA1509_33503} {RNA1310_41267.1} {RNA815_38083} Mlig455_041283 {REF} {Length: 3377} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=207.2]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=67.4, Expect=4e-11]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=60.1, Expect=7e-09]} {Celegans: WBGene00003174, mec-10, Degenerin mec-10, [Score=66.2, Expect=5e-11]} {Smed: dd_Smed_v6_12037_0_1, dd_Smed_v6_12037_0_1, [Score=112, Expect=8e-26]} {RNA1509_33503} {RNA1310_18874} {RNA815_38083}
17.	MligTC455_30699	96	2.01	Mlig455_061110	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.897		0.95	-	-	-	0.950	-	-	Mlig455_061110 {REF} {Length: 3253} {Pfam: Fibronectin type III domain [PF00041.23, score=79.9]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=19.3]} {RNA1509_43854} {RNA1310_20229.1} {RNA815_718.1}
18.	MligTC455_38671	32	0.67	Mlig455_020877, Mlig455_060658	Neo: - Age: -	MAP3K7, RTL1	0.95	-	-	-	0.950	-	-	Mlig455_020877 {REF} {Length: 1966} {Pfam: Protein kinase domain [PF00069.27, score=59.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=59.0]; MraW methylase family [PF01795.21, score=24.9]} {Human: ENSG00000135341, MAP3K7, mitogen-activated protein kinase kinase kinase 7, [Score=70.5, Expect=2e-12]; ENSG00000130758, MAP3K10, mitogen-activated protein kinase kinase kinase 10, [Score=69.3, Expect=7e-12]} {Mouse: ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=70.9, Expect=1e-12]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=70.1, Expect=1e-12]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=63.5, Expect=2e-10]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.2, Expect=2e-08]} {Smed: dd_Smed_v6_8571_0_1, dd_Smed_v6_8571_0_1, [Score=64.3, Expect=7e-11]} {RNA1509_47567} {RNA1310_9609} {RNA815_3249.1} Mlig455_060658 {REF} {Length: 6013} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=100.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=89.2]; Protein kinase domain [PF00069.27, score=56.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=56.1]; Integrase zinc binding domain [PF17921.3, score=47.1]; Integrase core domain [PF00665.28, score=44.2]; MraW methylase family [PF01795.21, score=20.5]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=88.2, Expect=1e-16]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=71.6, Expect=1e-11]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=71.2, Expect=6e-12]; ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=68.9, Expect=5e-11]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=62.4, Expect=2e-09]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.6, Expect=1e-07]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=309, Expect=2e-87]} {RNA1509_24311} {RNA1310_9609} {RNA815_3249.1}

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