M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13321

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13321 258 5.38 Mlig455_045501

Neo: -

Age: Down-Down-Up

 Mlig455_045501 {REF} {Length: 2006} {RNA1509_43769} {RNA1310_13950, RNA1509_43769} {RNA1509_43769, RNA815_5909}

Cumulative graph for MligTC455_13321

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.418 2.983 0.21256 0.85309
RegionR2 1.117 2.983 0.20625 0.56885
RegionR3 0.659 2.983 0.46110 0.97054
RegionR4 0.903 2.983 0.32912 0.64714
RegionR5 0.121 2.983 0.80540 1.00000
RegionR6 0.916 2.983 0.28405 0.87440
RegionR7 0.517 2.983 0.62572 1.00000
RegionR8 1.186 2.983 0.32602 0.95920

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.683 2.983 0.99992 1.00000
RegenerationR2 -0.499 2.983 0.24688 0.69435
RegenerationR3 0.479 2.983 0.36151 0.77784
RegenerationR4 0.244 2.983 0.64235 0.92892
RegenerationR5 0.392 2.983 0.44037 0.82456
RegenerationR6 0.257 2.983 0.62164 0.88178
RegenerationBL -2.093 2.983 0.02988 0.19260
RegenerationTP 0.924 2.983 0.18616 0.62291


Genes with expression patterns similar to MligTC455_13321

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13321 258 5.38 Mlig455_045501

Neo: -

Age: Down-Down-Up

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_045501 {REF} {Length: 2006} {RNA1509_43769} {RNA1310_13950, RNA1509_43769} {RNA1509_43769, RNA815_5909}
2. MligTC455_24819 172 3.59 Mlig455_019041

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.498

 ETS2 2.52 - 0.971 - 0.791 - 0.758 Mlig455_019041 {REF} {Length: 7155} {Pfam: Ets-domain [PF00178.24, score=111.3]} {Human: ENSG00000157557, ETS2, ETS proto-oncogene 2, transcription factor, [RH, Score=156, Expect=2e-42]; ENSG00000134954, ETS1, ETS proto-oncogene 1, transcription factor, [RH, Score=150, Expect=1e-40]} {Mouse: ENSMUSG00000022895, Ets2, E26 avian leukemia oncogene 2, 3' domain, [RH, Score=156, Expect=1e-42]; ENSMUSG00000032035, Ets1, E26 avian leukemia oncogene 1, 5' domain, [RH, Score=151, Expect=6e-41]} {Dmel: FBgn0003118, pnt, pointed, [RH, Score=145, Expect=7e-38]} {Celegans: WBGene00016600, ets-5, ETS class transcription factor, [Score=117, Expect=5e-31]} {Smed: dd_Smed_v6_28005_0_1, dd_Smed_v6_28005_0_1, [Score=115, Expect=1e-30]} {RNA1509_20315} {RNA1310_8950, RNA1509_20315} {RNA1509_20315, RNA815_11336}
3. MligTC455_28200 193 4.02 Mlig455_028718

Neo: -

Age: Down-Down-Up

 1.767 - 0.958 - - - 0.809 Mlig455_028718 {REF} {Length: 3033} {RNA1310_26549.1} {RNA815_8222.1}
4. MligTC455_48715 129 2.7 Mlig455_015244

Neo: -

Age: logFC(26M/2M)=-0.557

 1.724 0.772 0.952 - - - - Mlig455_015244 {REF} {Length: 1838} {RNA1509_39666} {RNA1310_16691.2, RNA1509_39666} {RNA1509_39666, RNA815_18464}
5. MligTC455_24820 159 3.32 Mlig455_055662

Neo: -

Age: -

 ETS1 1.697 - 0.963 - - - 0.734 Mlig455_055662 {REF} {Length: 1194} {Pfam: Ets-domain [PF00178.24, score=30.3]} {Human: ENSG00000134954, ETS1, ETS proto-oncogene 1, transcription factor, [Score=44.3, Expect=1e-06]; ENSG00000157557, ETS2, ETS proto-oncogene 2, transcription factor, [Score=44.3, Expect=1e-06]; ENSG00000126767, ELK1, ELK1, ETS transcription factor, [Score=42.7, Expect=5e-06]} {Mouse: ENSMUSG00000022895, Ets2, E26 avian leukemia oncogene 2, 3' domain, [Score=44.7, Expect=8e-07]; ENSMUSG00000032035, Ets1, E26 avian leukemia oncogene 1, 5' domain, [Score=44.3, Expect=9e-07]; ENSMUSG00000009406, Elk1, ELK1, member of ETS oncogene family, [Score=43.1, Expect=3e-06]} {Dmel: FBgn0003118, pnt, pointed, [Score=44.7, Expect=5e-07]} {Celegans: WBGene00017598, F19F10.1, [Score=40.8, Expect=9e-06]} {Smed: dd_Smed_v6_2092_0_1, dd_Smed_v6_2092_0_1, [Score=48.5, Expect=2e-09]} {RNA1509_20315} {RNA1310_8950} {RNA815_30626}
6. MligTC455_41859 88 1.84 Mlig455_032062

Neo: -

Age: -

 AL096814.1 1.678 - 0.951 - - - 0.727 Mlig455_032062 {REF} {Length: 1148} {Human: ENSG00000214732, AL096814.1, novel protein, [RH, Score=49.3, Expect=1e-07]} {Mouse: ENSMUSG00000116001, 1700001C19Rik, RIKEN cDNA 1700001C19 gene, [RH, Score=48.9, Expect=1e-07]; ENSMUSG00000047150, 1700001C19Rik, RIKEN cDNA 1700001C19 gene, [RH, Score=48.9, Expect=1e-07]} {RNA1509_35528} {RNA1310_98405} {RNA815_20810}
7. MligTC455_39406 44 0.92 Mlig455_026121

Neo: -

Age: Up-Down-Down

 RBMS1 0.963 - 0.963 - - - - Mlig455_026121 {REF} {Length: 2550} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=40.0]} {Human: ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=106, Expect=1e-24]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=102, Expect=5e-23]; ENSG00000076067, RBMS2, RNA binding motif single stranded interacting protein 2, [Score=102, Expect=4e-23]} {Mouse: ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [Score=110, Expect=4e-26]} {Dmel: FBgn0052423, shep, alan shepard, [Score=84.7, Expect=3e-17]} {Celegans: WBGene00006331, sup-26, SUPpressor, [Score=100, Expect=9e-23]} {Smed: dd_Smed_v6_3832_0_1, dd_Smed_v6_3832_0_1, [RH, Score=105, Expect=9e-25]} {RNA1310_39053} {RNA815_20087}
8. MligTC455_47335 1032 21.5 Mlig455_062557

Neo: -

Age: -

Region-enriched R7: 2.603/0.00000

 QPCT 0.962 - - - - - 0.962 Mlig455_062557 {REF} {Length: 3446} {Pfam: Peptidase family M28 [PF04389.19, score=137.0]} {Human: ENSG00000115828, QPCT, glutaminyl-peptide cyclotransferase, [RH, Score=206, Expect=8e-63]} {Mouse: ENSMUSG00000024084, Qpct, glutaminyl-peptide cyclotransferase (glutaminyl cyclase), [RH, Score=205, Expect=9e-63]} {Dmel: FBgn0036999, isoQC, iso Glutaminyl cyclase, [RH, Score=231, Expect=4e-73]} {Celegans: WBGene00010418, H27A22.1, [RH, Score=233, Expect=1e-73]} {Smed: dd_Smed_v6_4861_0_1, dd_Smed_v6_4861_0_1, [RH, Score=229, Expect=2e-72]} {RNA1509_25710, RNA1509_30940, RNA1509_32442, RNA1509_43722, RNA1509_6251} {RNA1310_17611, RNA1509_25710, RNA1509_30940, RNA1509_32442, RNA1509_43722, RNA1509_6251} {RNA1509_25710, RNA1509_30940, RNA1509_32442, RNA1509_43722, RNA1509_6251, RNA815_7821}
9. MligTC455_21789 52 1.07 Mlig455_032584

Neo: -

Age: -

 0.961 - 0.961 - - - - Mlig455_032584 {REF} {Length: 1578} {Pfam: Integrase zinc binding domain [PF17921.3, score=54.9]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=34.1]; Integrase core domain [PF00665.28, score=29.0]} {Smed: dd_Smed_v6_1574_6_73, dd_Smed_v6_1574_6_73, [Score=124, Expect=8e-31]} {RNA1509_29748} {RNA1310_1140.1} {RNA815_993.1}
10. MligTC455_39036 111 2.31 Mlig455_025027

Neo: -

Age: -

 MID1 0.96 - 0.960 - - - - Mlig455_025027 {REF} {Length: 3351} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=38.7]; RING-type zinc-finger [PF13445.8, score=36.6]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=36.0]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=33.1]; zinc-RING finger domain [PF14634.8, score=28.8]; Ring finger domain [PF13639.8, score=28.7]; zinc finger of C3HC4-type, RING [PF15227.8, score=28.5]; Prokaryotic RING finger family 4 [PF14447.8, score=23.7]; U-box domain [PF04564.17, score=21.4]; B-box zinc finger [PF00643.26, score=21.1]} {Human: ENSG00000101871, MID1, midline 1, [RH, Score=80.9, Expect=3e-15]} {Mouse: ENSMUSG00000035299, Mid1, midline 1, [Score=83.2, Expect=5e-16]; ENSMUSG00000000266, Mid2, midline 2, [Score=82.4, Expect=9e-16]} {Dmel: FBgn0265356, tn, thin, [Score=54.7, Expect=3e-07]} {Celegans: WBGene00016539, madd-2, [Score=63.9, Expect=3e-10]} {Smed: dd_Smed_v6_6290_0_1, dd_Smed_v6_6290_0_1, [Score=56.6, Expect=3e-08]} {RNA1509_31988} {RNA1310_8538, RNA1509_31988} {RNA1509_31988, RNA815_4019.1}
11. MligTC455_17393 345 7.18 Mlig455_019018, Mlig455_055685

Neo: -

Age: -

 ANKDD1A 0.959 - 0.959 - - - -

Mlig455_019018 {REF} {Length: 2636} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=191.1]; Ankyrin repeats (many copies) [PF13637.8, score=165.7]; Ankyrin repeat [PF13606.8, score=151.2]; Ankyrin repeats (many copies) [PF13857.8, score=149.5]; Ankyrin repeat [PF00023.32, score=143.3]; Death domain [PF00531.24, score=29.5]} {Human: ENSG00000166839, ANKDD1A, ankyrin repeat and death domain containing 1A, [RH, Score=266, Expect=9e-82]} {Mouse: ENSMUSG00000066510, Ankdd1a, ankyrin repeat and death domain containing 1A, [RH, Score=273, Expect=2e-84]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=139, Expect=6e-34]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=131, Expect=1e-31]} {Smed: dd_Smed_v6_7532_0_1, dd_Smed_v6_7532_0_1, [RH, Score=464, Expect=2e-158]} {RNA1509_56207} {RNA1310_4362} {RNA815_20274}

Mlig455_055685 {REF} {Length: 2672} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=191.4]; Ankyrin repeats (many copies) [PF13637.8, score=165.4]; Ankyrin repeat [PF13606.8, score=149.6]; Ankyrin repeats (many copies) [PF13857.8, score=148.6]; Ankyrin repeat [PF00023.32, score=142.4]; Death domain [PF00531.24, score=29.5]} {Human: ENSG00000166839, ANKDD1A, ankyrin repeat and death domain containing 1A, [RH, Score=267, Expect=7e-82]} {Mouse: ENSMUSG00000066510, Ankdd1a, ankyrin repeat and death domain containing 1A, [RH, Score=273, Expect=2e-84]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=137, Expect=1e-33]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=131, Expect=1e-31]} {Smed: dd_Smed_v6_7532_0_1, dd_Smed_v6_7532_0_1, [RH, Score=466, Expect=7e-159]} {RNA1509_56207} {RNA1310_4362, RNA1509_56207} {RNA1509_56207, RNA815_20274}
12. MligTC455_25429 200 4.17 Mlig455_048296, Mlig455_048322, Mlig455_048339

Neo: -

Age: Up-Down-Down

 ARRDC2, ARRDC4 0.959 - 0.959 - - - -

Mlig455_048296 {REF} {Length: 4176} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=72.1]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=68.9]; Rgp1 [PF08737.12, score=20.6]} {Human: ENSG00000140450, ARRDC4, arrestin domain containing 4, [RH, Score=102, Expect=3e-23]} {Mouse: ENSMUSG00000042659, Arrdc4, arrestin domain containing 4, [RH, Score=103, Expect=1e-23]} {Dmel: FBgn0035103, Vdup1, Vitamin D[[3]] up-regulated protein 1, [RH, Score=115, Expect=3e-28]} {Celegans: WBGene00013043, arrd-16, ARRestin Domain protein, [Score=93.6, Expect=1e-20]} {Smed: dd_Smed_v6_8715_0_1, dd_Smed_v6_8715_0_1, [RH, Score=214, Expect=4e-64]} {RNA1509_38119} {RNA1310_8824} {RNA815_16520}

Mlig455_048322 {REF} {Length: 4514} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=73.1]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=68.6]; Rgp1 [PF08737.12, score=23.3]} {Human: ENSG00000105643, ARRDC2, arrestin domain containing 2, [RH, Score=114, Expect=1e-27]} {Mouse: ENSMUSG00000042659, Arrdc4, arrestin domain containing 4, [RH, Score=104, Expect=5e-24]} {Dmel: FBgn0035103, Vdup1, Vitamin D[[3]] up-regulated protein 1, [RH, Score=119, Expect=9e-30]} {Celegans: WBGene00011732, arrd-17, Arrestin domain-containing protein 17, [Score=106, Expect=7e-25]} {Smed: dd_Smed_v6_8715_0_1, dd_Smed_v6_8715_0_1, [RH, Score=217, Expect=4e-65]} {RNA1509_38119} {RNA1310_8824} {RNA815_16520}

Mlig455_048339 {REF} {Length: 3953} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=74.5]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=64.9]; Rgp1 [PF08737.12, score=23.7]} {Human: ENSG00000105643, ARRDC2, arrestin domain containing 2, [RH, Score=112, Expect=2e-26]} {Mouse: ENSMUSG00000042659, Arrdc4, arrestin domain containing 4, [RH, Score=105, Expect=2e-24]} {Dmel: FBgn0037465, CG1105, [Score=120, Expect=8e-30]} {Celegans: WBGene00011732, arrd-17, Arrestin domain-containing protein 17, [Score=103, Expect=9e-24]} {Smed: dd_Smed_v6_8715_0_1, dd_Smed_v6_8715_0_1, [RH, Score=213, Expect=2e-63]} {RNA1509_38119} {RNA1310_8824} {RNA815_16520}
13. MligTC455_31313 381 7.94 Mlig455_001901

Neo: -

Age: -

 ARGLU1 0.959 - 0.959 - - - - Mlig455_001901 {REF} {Length: 2328} {TRANSSPLICED} {Pfam: Arginine and glutamate-rich 1 [PF15346.8, score=111.3]} {Human: ENSG00000134884, ARGLU1, arginine and glutamate rich 1, [RH, Score=79.0, Expect=1e-16]} {Mouse: ENSMUSG00000040459, Arglu1, arginine and glutamate rich 1, [RH, Score=79.3, Expect=9e-17]} {Dmel: FBgn0051712, CG31712, [RH, Score=83.2, Expect=3e-18]} {Smed: dd_Smed_v6_6381_0_1, dd_Smed_v6_6381_0_1, [RH, Score=63.9, Expect=5e-12]} {RNA1509_30130} {RNA1310_34850} {RNA815_5433.1}
14. MligTC455_46527 387 8.06 Mlig455_058040, Mlig455_058084

Neo: -

Age: -

Region-enriched R7: 2.259/0.03706

 0.958 - - - - - 0.958

Mlig455_058040 {REF} {Length: 1328} {RNA1509_9075} {RNA1310_18297} {RNA815_13910.1}

Mlig455_058084 {REF} {Length: 1308} {RNA1509_9075} {RNA1310_18297} {RNA815_13910.1}
15. MligTC455_51358 183 3.81 Mlig455_064055

Neo: -

Age: -

 0.957 - 0.957 - - - - Mlig455_064055 {REF} {Length: 1393} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_48446} {RNA1310_90226, RNA1509_48446} {RNA1509_48446, RNA815_47603}
16. MligTC455_24871 134 2.79 Mlig455_045060

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.520

 0.956 - 0.956 - - - - Mlig455_045060 {REF} {Length: 2095} {RNA1509_24492} {RNA1310_18406} {RNA815_9898}
17. MligTC455_27485 366 7.62 Mlig455_047776

Neo: -

Age: Up-Down-Down

 0.956 - 0.956 - - - - Mlig455_047776 {REF} {Length: 885} {RNA1509_42296} {RNA1310_66477} {RNA815_31452.1}
18. MligTC455_29340 215 4.49 Mlig455_045804

Neo: -

Age: Down-Up-Down

 SIDT1 0.955 - - - - - 0.955 Mlig455_045804 {REF} {Length: 7995} {Pfam: dsRNA-gated channel SID-1 [PF13965.8, score=364.2]} {Human: ENSG00000072858, SIDT1, SID1 transmembrane family member 1, [Score=243, Expect=1e-68]} {Mouse: ENSMUSG00000022696, Sidt1, SID1 transmembrane family, member 1, [Score=228, Expect=2e-63]; ENSMUSG00000034908, Sidt2, SID1 transmembrane family, member 2, [Score=221, Expect=7e-61]} {Celegans: WBGene00006477, chup-1, CHolesterol UPtake associated, [Score=203, Expect=3e-55]} {Smed: dd_Smed_v6_6063_0_2, dd_Smed_v6_6063_0_2, [Score=231, Expect=5e-65]} {RNA1509_21798, RNA1509_22787} {RNA1310_927.1, RNA1509_21798, RNA1509_22787} {RNA1509_21798, RNA1509_22787, RNA815_827}
19. MligTC455_45250 173 3.61 Mlig455_012405

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.370

Region-enriched R8: 4.444/0.04464

 0.955 - 0.955 - - - - Mlig455_012405 {REF} {Length: 2733} {RNA1310_16550} {RNA815_17676}
20. MligTC455_51809 1156 24.09 Mlig455_029569, Mlig455_061527

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.569

Regeneration-downregulated BL: -2.620

Regeneration-depleted BL: -2.620

 0.955 - - - - - 0.955

Mlig455_029569 {REF} {Length: 1842} {RNA1509_6500} {RNA1310_28860.1} {RNA815_9694}

Mlig455_061527 {REF} {Length: 1914} {RNA1509_6500} {RNA1310_28860.1} {RNA815_9694}
21. MligTC455_39332 181 3.77 Mlig455_052091

Neo: -

Age: Down-Up-Up

 0.952 - 0.952 - - - - Mlig455_052091 {REF} {Length: 3152} {RNA1509_28814} {RNA1310_9674, RNA1509_28814} {RNA1509_28814, RNA815_9245}
22. MligTC455_40114 43 0.9 Mlig455_066998

Neo: -

Age: -

 DNAJC21 0.951 - 0.951 - - - - Mlig455_066998 {REF} {Length: 2121} {TRANSSPLICED} {Pfam: DnaJ domain [PF00226.33, score=88.7]; Zinc-finger of C2H2 type [PF12874.9, score=23.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=22.6]; C2H2-type zinc finger [PF13894.8, score=21.2]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=20.4]} {Human: ENSG00000168724, DNAJC21, DnaJ heat shock protein family (Hsp40) member C21, [RH, Score=315, Expect=8e-101]} {Mouse: ENSMUSG00000044224, Dnajc21, DnaJ heat shock protein family (Hsp40) member C21, [RH, Score=317, Expect=7e-102]} {Dmel: FBgn0027599, CG2790, [RH, Score=282, Expect=3e-88]} {Celegans: WBGene00001035, dnj-17, DNaJ domain (Prokaryotic heat shock protein), [RH, Score=270, Expect=1e-84]} {Smed: dd_Smed_v6_5775_0_1, dd_Smed_v6_5775_0_1, [RH, Score=244, Expect=9e-75]} {RNA1509_5192} {RNA1310_14822} {RNA815_6329}
23. MligTC455_31937 53 1.1 Mlig455_029618

Neo: -

Age: -

 0.95 - 0.950 - - - - Mlig455_029618 {REF} {Length: 326} {NoTransDecoderORF} {RNA1509_42786} {RNA1310_55169} {RNA815_23925}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA