M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_13786

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_13786 48 1.01 Mlig455_033693

Neo: -

Age: -

 Mlig455_033693 {REF} {Length: 1503} {NoTransDecoderORF} {RNA1509_45700} {RNA1310_39783} {RNA815_39530}

Cumulative graph for MligTC455_13786

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.428 0.687 0.99982 1.00000
RegionR2 1.865 0.687 0.99954 1.00000
RegionR3 0.966 0.687 1.00000 1.00000
RegionR4 -1.592 0.687 1.00000 1.00000
RegionR5 0.168 0.687 0.99996 1.00000
RegionR6 0.397 0.687 1.00000 1.00000
RegionR7 0.551 0.687 0.99992 1.00000
RegionR8 0.072 0.687 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.177 0.687 0.99995 1.00000
RegenerationR2 1.863 0.687 0.38675 0.80617
RegenerationR3 1.123 0.687 0.66527 0.93545
RegenerationR4 1.459 0.687 0.54527 0.89050
RegenerationR5 1.872 0.687 0.46740 0.84081
RegenerationR6 3.984 0.687 0.19909 0.53936
RegenerationBL -0.757 0.687 1.00000 1.00000
RegenerationTP 3.575 0.687 0.48817 0.89402


Genes with expression patterns similar to MligTC455_13786

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_13786 48 1.01 Mlig455_033693

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_033693 {REF} {Length: 1503} {NoTransDecoderORF} {RNA1509_45700} {RNA1310_39783} {RNA815_39530}
2. MligTC455_04340 21 0.44 Mlig455_038731

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_038731 {REF} {Length: 672} {NoTransDecoderORF} {RNA1310_110801}
3. MligTC455_32379 46 0.96 Mlig455_012393

Neo: -

Age: Up-Down-Up

 ROS1 0.973 - - - 0.973 - - Mlig455_012393 {REF} {Length: 7814} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=278.1]; Protein kinase domain [PF00069.27, score=126.0]; Fibronectin type III domain [PF00041.23, score=34.5]} {Human: ENSG00000047936, ROS1, ROS proto-oncogene 1, receptor tyrosine kinase, [RH, Score=293, Expect=9e-79]; ENSG00000171094, ALK, ALK receptor tyrosine kinase, [RH, Score=292, Expect=3e-85]} {Mouse: ENSMUSG00000019893, Ros1, Ros1 proto-oncogene, [RH, Score=293, Expect=6e-79]; ENSMUSG00000055471, Alk, anaplastic lymphoma kinase, [RH, Score=290, Expect=1e-78]; ENSMUSG00000027297, Ltk, leukocyte tyrosine kinase, [RH, Score=284, Expect=2e-83]} {Dmel: FBgn0003366, sev, sevenless, [RH, Score=304, Expect=2e-82]} {Celegans: WBGene00004740, scd-2, ALK tyrosine kinase receptor homolog scd-2, [RH, Score=222, Expect=7e-58]} {Smed: dd_Smed_v6_8973_0_1, dd_Smed_v6_8973_0_1, [RH, Score=234, Expect=2e-61]} {RNA1509_22677} {RNA1310_2018.1, RNA1509_22677} {RNA1509_22677, RNA815_12907}
4. MligTC455_06052 69 1.44 Mlig455_012535

Neo: -

Age: -

 0.965 - - - 0.965 - - Mlig455_012535 {REF} {Length: 999} {TRANSSPLICED} {RNA1509_59056} {RNA1310_27535, RNA1509_59056} {RNA1509_59056, RNA815_27103}
5. MligTC455_08727 15 0.31 Mlig455_036809

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_036809 {REF} {Length: 2288} {RNA1509_4847} {RNA1310_36270} {RNA815_652.1}
6. MligTC455_49207 271 5.64 Mlig455_037375

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_037375 {REF} {Length: 880} {RNA1509_49653} {RNA1310_49359.1} {RNA815_26981}
7. MligTC455_19440 231 4.81 Mlig455_060962

Neo: Int S/G2/M

Age: -

 HASPIN 0.956 - - - - 0.956 - Mlig455_060962 {REF} {Length: 3260} {TRANSSPLICED} {Pfam: Haspin like kinase domain [PF12330.10, score=192.8]; Protein kinase domain [PF00069.27, score=18.5]} {Human: ENSG00000177602, HASPIN, histone H3 associated protein kinase, [RH, Score=234, Expect=4e-66]} {Mouse: ENSMUSG00000050107, Haspin, histone H3 associated protein kinase, [RH, Score=244, Expect=4e-70]} {Dmel: FBgn0046706, Haspin, [Score=218, Expect=3e-62]} {Celegans: WBGene00007258, hasp-1, HASPin kinase related, [RH, Score=207, Expect=3e-56]} {Smed: dd_Smed_v6_12380_0_1, dd_Smed_v6_12380_0_1, [RH, Score=339, Expect=3e-107]} {RNA1509_10543, RNA1509_34207} {RNA1310_6931.1, RNA1509_10543, RNA1509_34207} {RNA1509_10543, RNA1509_34207, RNA815_2291}
8. MligTC455_20945 202 4.21 Mlig455_067279

Neo: -

Age: -

Region-enriched R3: 2.856/0.00297

 ANK2 0.956 - - - - 0.956 - Mlig455_067279 {REF} {Length: 6390} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=545.2]; Ankyrin repeats (many copies) [PF13637.8, score=444.4]; Ankyrin repeat [PF13606.8, score=346.8]; Ankyrin repeats (many copies) [PF13857.8, score=329.1]; Ankyrin repeat [PF00023.32, score=292.0]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=204, Expect=2e-52]; ENSG00000151150, ANK3, ankyrin 3, [Score=200, Expect=5e-51]; ENSG00000029534, ANK1, ankyrin 1, [Score=196, Expect=1e-49]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=205, Expect=1e-52]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=199, Expect=3e-51]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=196, Expect=4e-50]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=200, Expect=7e-52]} {Smed: dd_Smed_v6_5303_0_2, dd_Smed_v6_5303_0_2, [Score=223, Expect=8e-60]} {RNA1509_7284} {RNA1310_892.1} {RNA815_177}
9. MligTC455_39059 16 0.33 Mlig455_025569

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_025569 {REF} {Length: 3456} {NoTransDecoderORF} {RNA1509_25000} {RNA1310_37741} {RNA815_22616.1}
10. MligTC455_32424 611 12.73 Mlig455_031894, Mlig455_061292, Mlig455_064662

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_031894 {REF} {Length: 1087} {RNA1509_52975} {RNA1310_17621}

Mlig455_061292 {REF} {Length: 179} {NoTransDecoderORF} {RNA1509_52975} {RNA1310_115556}

Mlig455_064662 {REF} {Length: 1953} {RNA1509_52975} {RNA1310_17621} {RNA815_50584}
11. MligTC455_52769 73 1.51 Mlig455_005296

Neo: -

Age: Up-Down-Up

 0.952 - - - - 0.952 - Mlig455_005296 {REF} {Length: 1157} {TRANSSPLICED} {RNA1509_54814} {RNA1310_30336.1} {RNA815_6347.1}
12. MligTC455_33434 48 1 Mlig455_015085, Mlig455_047128

Neo: -

Age: -

 VEZF1 0.951 - - - - 0.951 -

Mlig455_015085 {REF} {Length: 2879} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=54.3, Expect=3e-07]} {RNA1509_12203} {RNA1310_1239} {RNA815_9387}

Mlig455_047128 {REF} {Length: 3786} {Human: ENSG00000136451, VEZF1, vascular endothelial zinc finger 1, [Score=51.6, Expect=3e-06]} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=82.4, Expect=2e-15]} {Smed: dd_Smed_v6_9974_1_8, dd_Smed_v6_9974_1_8, [Score=60.8, Expect=2e-09]} {RNA1509_12203} {RNA1310_718} {RNA815_9387}
13. MligTC455_22335 168 3.51 Mlig455_002669, Mlig455_014723

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_002669 {REF} {Length: 855} {NoTransDecoderORF} {RNA1509_58323} {RNA1310_33624.1, RNA1509_58323} {RNA1509_58323, RNA815_17640.1}

Mlig455_014723 {REF} {Length: 261} {RNA1509_23617} {RNA1310_25392} {RNA815_17640.1}
14. MligTC455_36077 110 2.29 Mlig455_014142, Mlig455_055799, Mlig455_062742

Neo: Germline

Age: -

 0.95 - - - - 0.950 -

Mlig455_014142 {REF} {Length: 176} {NoTransDecoderORF} {RNA1509_13580} {RNA1310_166} {RNA815_52135}

Mlig455_055799 {REF} {Length: 3057} {RNA1509_13580} {RNA1310_166} {RNA815_25647}

Mlig455_062742 {REF} {Length: 219} {NoTransDecoderORF} {RNA1509_13580} {RNA1310_373} {RNA815_52135}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA