M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32379

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32379 46 0.96 Mlig455_012393

Neo: -

Age: Up-Down-Up

 ROS1 Mlig455_012393 {REF} {Length: 7814} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=278.1]; Protein kinase domain [PF00069.27, score=126.0]; Fibronectin type III domain [PF00041.23, score=34.5]} {Human: ENSG00000047936, ROS1, ROS proto-oncogene 1, receptor tyrosine kinase, [RH, Score=293, Expect=9e-79]; ENSG00000171094, ALK, ALK receptor tyrosine kinase, [RH, Score=292, Expect=3e-85]} {Mouse: ENSMUSG00000019893, Ros1, Ros1 proto-oncogene, [RH, Score=293, Expect=6e-79]; ENSMUSG00000055471, Alk, anaplastic lymphoma kinase, [RH, Score=290, Expect=1e-78]; ENSMUSG00000027297, Ltk, leukocyte tyrosine kinase, [RH, Score=284, Expect=2e-83]} {Dmel: FBgn0003366, sev, sevenless, [RH, Score=304, Expect=2e-82]} {Celegans: WBGene00004740, scd-2, ALK tyrosine kinase receptor homolog scd-2, [RH, Score=222, Expect=7e-58]} {Smed: dd_Smed_v6_8973_0_1, dd_Smed_v6_8973_0_1, [RH, Score=234, Expect=2e-61]} {RNA1509_22677} {RNA1310_2018.1, RNA1509_22677} {RNA1509_22677, RNA815_12907}

Cumulative graph for MligTC455_32379

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.421 1.335 1.00000 1.00000
RegionR2 2.22 1.335 0.19401 0.55098
RegionR3 1.301 1.335 0.30430 0.84579
RegionR4 1.714 1.335 0.29477 0.60637
RegionR5 -0.36 1.335 0.76754 1.00000
RegionR6 1.843 1.335 0.19405 0.76165
RegionR7 -3.083 1.335 1.00000 1.00000
RegionR8 -3.213 1.335 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.763 1.335 1.00000 1.00000
RegenerationR2 0.524 1.335 0.54679 0.89133
RegenerationR3 0.898 1.335 0.45725 0.83628
RegenerationR4 0.669 1.335 0.67853 0.94536
RegenerationR5 1.481 1.335 0.23248 0.66588
RegenerationR6 1.556 1.335 0.14342 0.46388
RegenerationBL 5.004 1.335 0.01558 0.13161
RegenerationTP 3.388 1.335 0.24907 0.69611


Genes with expression patterns similar to MligTC455_32379

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32379 46 0.96 Mlig455_012393

Neo: -

Age: Up-Down-Up

 ROS1 5 1.000 1.000 - 1.000 1.000 1.000 Mlig455_012393 {REF} {Length: 7814} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=278.1]; Protein kinase domain [PF00069.27, score=126.0]; Fibronectin type III domain [PF00041.23, score=34.5]} {Human: ENSG00000047936, ROS1, ROS proto-oncogene 1, receptor tyrosine kinase, [RH, Score=293, Expect=9e-79]; ENSG00000171094, ALK, ALK receptor tyrosine kinase, [RH, Score=292, Expect=3e-85]} {Mouse: ENSMUSG00000019893, Ros1, Ros1 proto-oncogene, [RH, Score=293, Expect=6e-79]; ENSMUSG00000055471, Alk, anaplastic lymphoma kinase, [RH, Score=290, Expect=1e-78]; ENSMUSG00000027297, Ltk, leukocyte tyrosine kinase, [RH, Score=284, Expect=2e-83]} {Dmel: FBgn0003366, sev, sevenless, [RH, Score=304, Expect=2e-82]} {Celegans: WBGene00004740, scd-2, ALK tyrosine kinase receptor homolog scd-2, [RH, Score=222, Expect=7e-58]} {Smed: dd_Smed_v6_8973_0_1, dd_Smed_v6_8973_0_1, [RH, Score=234, Expect=2e-61]} {RNA1509_22677} {RNA1310_2018.1, RNA1509_22677} {RNA1509_22677, RNA815_12907}
2. MligTC455_32380 33 0.69 Mlig455_012816

Neo: -

Age: -

 ROS1 1.823 0.952 - - 0.871 - - Mlig455_012816 {REF} {Length: 7813} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=276.9]; Protein kinase domain [PF00069.27, score=125.3]; Fibronectin type III domain [PF00041.23, score=32.8]} {Human: ENSG00000047936, ROS1, ROS proto-oncogene 1, receptor tyrosine kinase, [RH, Score=290, Expect=1e-77]; ENSG00000171094, ALK, ALK receptor tyrosine kinase, [RH, Score=290, Expect=1e-84]} {Mouse: ENSMUSG00000055471, Alk, anaplastic lymphoma kinase, [RH, Score=288, Expect=6e-78]; ENSMUSG00000019893, Ros1, Ros1 proto-oncogene, [RH, Score=288, Expect=1e-77]; ENSMUSG00000027297, Ltk, leukocyte tyrosine kinase, [RH, Score=282, Expect=1e-82]} {Dmel: FBgn0003366, sev, sevenless, [RH, Score=302, Expect=7e-82]} {Celegans: WBGene00004740, scd-2, ALK tyrosine kinase receptor homolog scd-2, [RH, Score=222, Expect=6e-58]} {Smed: dd_Smed_v6_8973_0_1, dd_Smed_v6_8973_0_1, [RH, Score=231, Expect=2e-60]} {RNA1509_22677} {RNA1310_2018.1} {RNA815_12907}
3. MligTC455_43747 186 3.88 Mlig455_019998

Neo: -

Age: -

Region-enriched R2: 3.849/0.00050

 GLRA3 1.8 - 0.956 - - - 0.844 Mlig455_019998 {REF} {Length: 2977} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=148.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=117.6]} {Human: ENSG00000145451, GLRA3, glycine receptor alpha 3, [RH, Score=337, Expect=2e-111]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [RH, Score=332, Expect=1e-109]} {Mouse: ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [RH, Score=338, Expect=1e-111]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [RH, Score=330, Expect=5e-109]} {Dmel: FBgn0024963, GluClalpha, [RH, Score=292, Expect=2e-94]} {Celegans: WBGene00001586, ggr-1, Glycine receptor subunit beta-type 4, [RH, Score=260, Expect=1e-81]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [Score=254, Expect=4e-80]} {RNA1509_22140} {RNA1310_19557.2} {RNA815_6481}
4. MligTC455_13786 48 1.01 Mlig455_033693

Neo: -

Age: -

 0.973 - - - 0.973 - - Mlig455_033693 {REF} {Length: 1503} {NoTransDecoderORF} {RNA1509_45700} {RNA1310_39783} {RNA815_39530}
5. MligTC455_17151 70 1.45 Mlig455_022264

Neo: -

Age: -

 0.961 - - - 0.961 - - Mlig455_022264 {REF} {Length: 2660} {NoTransDecoderORF} {RNA1509_47234} {RNA1310_2938.1} {RNA815_14343.1}
6. MligTC455_08847 129 2.69 Mlig455_036624, Mlig455_036701

Neo: -

Age: -

 0.954 - - - - - 0.954

Mlig455_036624 {REF} {Length: 113} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_98531} {RNA815_35529}

Mlig455_036701 {REF} {Length: 497} {TRANSSPLICED} {RNA1310_86926} {RNA815_35529}
7. MligTC455_17773 26 0.53 Mlig455_019102

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.452

 0.952 - - - - - 0.952 Mlig455_019102 {REF} {Length: 1467} {Pfam: Cholesterol uptake porter CUP1 of Mce4, putative [PF11887.10, score=20.7]} {RNA1509_45238} {RNA1310_36939} {RNA815_17399}
8. MligTC455_39029 16 0.33 Mlig455_062581

Neo: -

Age: -

 MTNR1B 0.952 - - - 0.952 - - Mlig455_062581 {REF} {Length: 1670} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=151.7]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=45.5]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=23.4]} {Human: ENSG00000134640, MTNR1B, melatonin receptor 1B, [RH, Score=144, Expect=7e-39]} {Mouse: ENSMUSG00000050901, Mtnr1b, melatonin receptor 1B, [Score=132, Expect=1e-34]; ENSMUSG00000054764, Mtnr1a, melatonin receptor 1A, [Score=127, Expect=6e-33]} {Dmel: FBgn0025631, moody, [Score=103, Expect=9e-24]} {Celegans: WBGene00001052, dop-1, DOPamine receptor, [Score=85.5, Expect=4e-18]} {Smed: dd_Smed_v6_65999_0_1, dd_Smed_v6_65999_0_1, [Score=228, Expect=3e-72]} {RNA1310_74976}
9. MligTC455_33122 65 1.35 Mlig455_027786, Mlig455_063451

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=0.648

 SYNPR, SYP 0.95 - - - 0.950 - -

Mlig455_027786 {REF} {Length: 3347} {Pfam: Membrane-associating domain [PF01284.25, score=105.6]} {Human: ENSG00000102003, SYP, synaptophysin, [RH, Score=163, Expect=2e-48]; ENSG00000163630, SYNPR, synaptoporin, [RH, Score=162, Expect=2e-48]} {Mouse: ENSMUSG00000031144, Syp, synaptophysin, [RH, Score=162, Expect=6e-48]; ENSMUSG00000056296, Synpr, synaptoporin, [RH, Score=160, Expect=7e-48]} {Celegans: WBGene00004979, sph-1, SynaptoPHysin, [RH, Score=80.1, Expect=5e-18]} {Smed: dd_Smed_v6_682_0_1, dd_Smed_v6_682_0_1, [RH, Score=178, Expect=1e-55]} {RNA1509_20189, RNA1509_46137, RNA1509_55192} {RNA1310_9076, RNA1509_20189, RNA1509_46137, RNA1509_55192} {RNA1509_20189, RNA1509_46137, RNA1509_55192, RNA815_6504}

Mlig455_063451 {REF} {Length: 1444} {Pfam: Membrane-associating domain [PF01284.25, score=65.8]} {Human: ENSG00000163630, SYNPR, synaptoporin, [Score=97.1, Expect=1e-24]; ENSG00000102003, SYP, synaptophysin, [Score=94.7, Expect=1e-23]} {Mouse: ENSMUSG00000031144, Syp, synaptophysin, [RH, Score=93.2, Expect=2e-24]} {Celegans: WBGene00004979, sph-1, SynaptoPHysin, [Score=63.2, Expect=1e-12]} {Smed: dd_Smed_v6_682_0_1, dd_Smed_v6_682_0_1, [Score=94.4, Expect=2e-24]} {RNA1509_20189} {RNA1310_9076} {RNA815_6504}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA