M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_14021

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14021 15 0.31 Mlig455_000433, Mlig455_024852

Neo: -

Age: -

Mlig455_000433 {REF} {Length: 1826} {RNA1310_112915}

Mlig455_024852 {REF} {Length: 202} {NoTransDecoderORF} {RNA1310_139314}

Cumulative graph for MligTC455_14021

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.191 0.792 0.99956 1.00000
RegionR2 4.42 0.792 0.11821 0.42588
RegionR3 3.257 0.792 0.20180 0.74176
RegionR4 -2.688 0.792 1.00000 1.00000
RegionR5 0.452 0.792 0.50906 0.87199
RegionR6 1.766 0.792 0.38053 0.96010
RegionR7 -0.642 0.792 1.00000 1.00000
RegionR8 -0.374 0.792 0.99951 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.583 0.792 0.99967 1.00000
RegenerationR2 0.846 0.792 0.62177 0.92381
RegenerationR3 1.669 0.792 0.31052 0.74127
RegenerationR4 2.623 0.792 0.24892 0.69709
RegenerationR5 1.11 0.792 0.36901 0.77930
RegenerationR6 -0.265 0.792 0.92767 1.00000
RegenerationBL 0.688 0.792 0.99979 1.00000
RegenerationTP 1.589 0.792 0.99976 1.00000


Genes with expression patterns similar to MligTC455_14021

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14021 15 0.31 Mlig455_000433, Mlig455_024852

Neo: -

Age: -

 1 - - - - 1.000 -

Mlig455_000433 {REF} {Length: 1826} {RNA1310_112915}

Mlig455_024852 {REF} {Length: 202} {NoTransDecoderORF} {RNA1310_139314}
2. MligTC455_55397 4 0.09 Mlig455_051517

Neo: -

Age: -

 0.993 - - - - 0.993 - Mlig455_051517 {REF} {Length: 200} {NoTransDecoderORF}
3. MligTC455_14026 38 0.8 Mlig455_023627

Neo: -

Age: -

 0.986 - - - - 0.986 - Mlig455_023627 {REF} {Length: 1475} {Pfam: Flagellar-associated PapD-like [PF14874.8, score=30.1]; CS domain [PF04969.18, score=27.0]} {RNA1509_6357} {RNA1310_134529} {RNA815_1252}
4. MligTC455_55842 8 0.17 Mlig455_011618

Neo: -

Age: -

 0.983 - - - - 0.983 - Mlig455_011618 {REF} {Length: 208} {NoTransDecoderORF}
5. MligTC455_36885 177 3.69 Mlig455_043100

Neo: -

Age: Up-Up-Down

 CASP10 0.979 - - - - 0.979 - Mlig455_043100 {REF} {Length: 4546} {Pfam: Caspase domain [PF00656.24, score=96.4]} {Human: ENSG00000003400, CASP10, caspase 10, [Score=65.1, Expect=3e-10]} {Mouse: ENSMUSG00000025888, Casp1, caspase 1, [Score=55.1, Expect=3e-07]} {Dmel: FBgn0028381, Decay, Death executioner caspase related to Apopain/Yama, [Score=58.2, Expect=1e-08]} {RNA1509_22461} {RNA1310_3207.1, RNA1509_22461} {RNA1509_22461, RNA815_1110}
6. MligTC455_05920 6 0.13 Mlig455_050975

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_050975 {REF} {Length: 592} {NoTransDecoderORF} {RNA1509_41075} {RNA1310_75397} {RNA815_45642}
7. MligTC455_00053 10 0.2 Mlig455_045698

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_045698 {REF} {Length: 347} {NoTransDecoderORF}
8. MligTC455_07528 13 0.27 Mlig455_064149

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_064149 {REF} {Length: 262} {NoTransDecoderORF}
9. MligTC455_38188 34 0.7 Mlig455_012112

Neo: -

Age: -

 SOX2 0.963 - - - - 0.963 - Mlig455_012112 {REF} {Length: 2469} {Pfam: HMG (high mobility group) box [PF00505.21, score=84.6]; HMG-box domain [PF09011.12, score=37.3]} {Human: ENSG00000181449, SOX2, SRY-box 2, [Score=127, Expect=1e-33]; ENSG00000125285, SOX21, SRY-box 21, [Score=126, Expect=5e-34]; ENSG00000182968, SOX1, SRY-box 1, [Score=124, Expect=2e-32]; ENSG00000168875, SOX14, SRY-box 14, [Score=124, Expect=2e-33]; ENSG00000134595, SOX3, SRY-box 3, [Score=123, Expect=2e-31]; ENSG00000129194, SOX15, SRY-box 15, [Score=121, Expect=4e-33]} {Mouse: ENSMUSG00000061517, Sox21, SRY (sex determining region Y)-box 21, [Score=127, Expect=3e-34]; ENSMUSG00000074637, Sox2, SRY (sex determining region Y)-box 2, [Score=127, Expect=7e-34]; ENSMUSG00000096014, Sox1, SRY (sex determining region Y)-box 1, [Score=125, Expect=1e-32]; ENSMUSG00000045179, Sox3, SRY (sex determining region Y)-box 3, [Score=124, Expect=8e-32]; ENSMUSG00000053747, Sox14, SRY (sex determining region Y)-box 14, [Score=124, Expect=1e-33]; ENSMUSG00000041287, Sox15, SRY (sex determining region Y)-box 15, [Score=122, Expect=8e-33]} {Dmel: FBgn0029123, SoxN, SoxNeuro, [Score=128, Expect=6e-33]} {Celegans: WBGene00004949, sox-2, Transcription factor sox-2, [Score=129, Expect=3e-35]} {Smed: dd_Smed_v6_13215_0_1, dd_Smed_v6_13215_0_1, [Score=132, Expect=9e-35]} {RNA1509_52207} {RNA1310_94698} {RNA815_61228}
10. MligTC455_28078 28 0.58 Mlig455_023538

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_023538 {REF} {Length: 4451} {Pfam: Ctr copper transporter family [PF04145.17, score=22.2]} {RNA1509_23358} {RNA1310_21251.1} {RNA815_46742}
11. MligTC455_30389 116 2.41 Mlig455_029602

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_029602 {REF} {Length: 2395} {RNA1509_16871} {RNA1310_10374.1} {RNA815_9291}
12. MligTC455_10164 25 0.53 Mlig455_047948

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_047948 {REF} {Length: 437} {NoTransDecoderORF} {RNA1509_42160} {RNA1310_38543} {RNA815_64948}
13. MligTC455_36395 22 0.47 Mlig455_052440

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_052440 {REF} {Length: 1750} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=49.8]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=62.0, Expect=7e-13]} {RNA1509_18603} {RNA1310_80625} {RNA815_38310}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA