M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_14082

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_14082 30 0.62 Mlig455_062323

Neo: -

Age: -

 Mlig455_062323 {REF} {Length: 874} {TRANSSPLICED} {Pfam: Asparaginase, N-terminal [PF00710.22, score=55.9]} {RNA1310_56701}

Cumulative graph for MligTC455_14082

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.629 1.006 0.99962 1.00000
RegionR2 -0.891 1.006 0.78421 1.00000
RegionR3 0.369 1.006 0.56296 1.00000
RegionR4 4.672 1.006 0.00982 0.06019
RegionR5 2.95 1.006 0.02444 0.11190
RegionR6 -1.835 1.006 0.99960 1.00000
RegionR7 -2.014 1.006 0.99962 1.00000
RegionR8 -1.622 1.006 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.322 1.006 1.00000 1.00000
RegenerationR2 0.338 1.006 0.76358 0.97770
RegenerationR3 0.315 1.006 0.81881 0.98720
RegenerationR4 -1.856 1.006 0.16784 0.60366
RegenerationR5 -0.85 1.006 0.38594 0.78951
RegenerationR6 2.548 1.006 0.17041 0.50164
RegenerationBL 2.642 1.006 0.18900 0.52199
RegenerationTP 2.507 1.006 0.37011 0.80782


Genes with expression patterns similar to MligTC455_14082

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_14082 30 0.62 Mlig455_062323

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_062323 {REF} {Length: 874} {TRANSSPLICED} {Pfam: Asparaginase, N-terminal [PF00710.22, score=55.9]} {RNA1310_56701}
2. MligTC455_31606 113 2.36 Mlig455_019067, Mlig455_064336

Neo: Int S/G2/M

Age: Up-Down-Down

 ATR 1.747 - - - - 0.791 0.956

Mlig455_019067 {REF} {Length: 4939} {Pfam: Phosphatidylinositol 3- and 4-kinase [PF00454.29, score=186.2]; FAT domain [PF02259.25, score=68.0]; FATC domain [PF02260.22, score=42.8]} {Human: ENSG00000175054, ATR, ATR serine/threonine kinase, [RH, Score=638, Expect=0.0]} {Mouse: ENSMUSG00000032409, Atr, ataxia telangiectasia and Rad3 related, [RH, Score=649, Expect=0.0]} {Dmel: FBgn0004367, mei-41, meiotic 41, [RH, Score=476, Expect=4e-140]} {Celegans: WBGene00000226, atl-1, Serine/threonine-protein kinase ATR, [RH, Score=226, Expect=4e-60]} {Smed: dd_Smed_v6_8754_0_1, dd_Smed_v6_8754_0_1, [RH, Score=528, Expect=1e-159]} {RNA1509_16317} {RNA1310_16516}

Mlig455_064336 {REF} {Length: 5998} {Pfam: Phosphatidylinositol 3- and 4-kinase [PF00454.29, score=186.3]; FAT domain [PF02259.25, score=67.2]; FATC domain [PF02260.22, score=42.7]} {Human: ENSG00000175054, ATR, ATR serine/threonine kinase, [Score=589, Expect=1e-176]} {Mouse: ENSMUSG00000032409, Atr, ataxia telangiectasia and Rad3 related, [Score=597, Expect=1e-179]} {Dmel: FBgn0004367, mei-41, meiotic 41, [RH, Score=469, Expect=3e-136]} {Celegans: WBGene00000226, atl-1, Serine/threonine-protein kinase ATR, [RH, Score=223, Expect=3e-58]} {Smed: dd_Smed_v6_8754_0_1, dd_Smed_v6_8754_0_1, [RH, Score=473, Expect=4e-139]} {RNA1509_16317} {RNA1310_16516}
3. MligTC455_13719 16 0.33 Mlig455_001255, Mlig455_059950

Neo: -

Age: -

 0.988 - - - - 0.988 -

Mlig455_001255 {REF} {Length: 2660}

Mlig455_059950 {REF} {Length: 2483}
4. MligTC455_32916 64 1.33 Mlig455_068908

Neo: -

Age: -

 0.982 - - - - - 0.982 Mlig455_068908 {REF} {Length: 1572} {RNA1509_32988} {RNA1310_50901} {RNA815_42442}
5. MligTC455_31085 56 1.17 Mlig455_012955

Neo: -

Age: -

Region-enriched R4: 4.450/0.01398

 ZFAND4 0.973 - - - - 0.973 - Mlig455_012955 {REF} {Length: 3260} {TRANSSPLICED} {Pfam: Ubiquitin family [PF00240.25, score=53.8]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=25.1]; Ubiquitin-like domain [PF14560.8, score=19.5]} {Human: ENSG00000172671, ZFAND4, zinc finger AN1-type containing 4, [RH, Score=146, Expect=5e-39]} {Mouse: ENSMUSG00000042213, Zfand4, zinc finger, AN1-type domain 4, [RH, Score=150, Expect=2e-40]} {Dmel: FBgn0003941, RpL40, Ribosomal protein L40, [Score=64.3, Expect=1e-12]} {Celegans: WBGene00006728, ubq-2, Ubiquitin-60S ribosomal protein L40 Ubiquitin 60S ribosomal protein L40, [Score=62.0, Expect=7e-12]} {Smed: dd_Smed_v6_4992_0_1, dd_Smed_v6_4992_0_1, [RH, Score=141, Expect=1e-38]} {RNA1509_11475, RNA1509_27952} {RNA1310_28869, RNA1509_27952} {RNA1509_27952, RNA815_6580}
6. MligTC455_52842 5 0.1 Mlig455_055679

Neo: -

Age: -

 ANGPTL7 0.971 - - - - 0.971 - Mlig455_055679 {REF} {Length: 1150} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=103.1]} {Human: ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=86.7, Expect=7e-19]; ENSG00000116147, TNR, tenascin R, [Score=86.7, Expect=2e-18]; ENSG00000120332, TNN, tenascin N, [Score=85.9, Expect=4e-18]; ENSG00000171560, FGA, fibrinogen alpha chain, [Score=82.4, Expect=6e-17]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=85.5, Expect=4e-18]; ENSMUSG00000015829, Tnr, tenascin R, [Score=84.0, Expect=1e-17]; ENSMUSG00000026938, Fcna, ficolin A, [Score=83.6, Expect=5e-18]; ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=82.8, Expect=9e-18]} {Dmel: FBgn0050280, CG30280, [Score=75.1, Expect=2e-15]} {Celegans: WBGene00020516, T15B7.1, [Score=52.8, Expect=1e-07]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=82.4, Expect=1e-17]} {RNA1310_126384}
7. MligTC455_45625 67 1.4 Mlig455_022744

Neo: -

Age: -

 0.963 - - - - - 0.963 Mlig455_022744 {REF} {Length: 652} {NoTransDecoderORF} {RNA1310_57685} {RNA815_60898}
8. MligTC455_52092 37 0.76 Mlig455_025474

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_025474 {REF} {Length: 901} {Pfam: Pancreatic hormone peptide [PF00159.20, score=19.5]} {RNA1509_56567} {RNA1310_46347} {RNA815_35686}
9. MligTC455_10651 37 0.76 Mlig455_050743

Neo: -

Age: -

 0.957 - - - 0.957 - - Mlig455_050743 {REF} {Length: 486} {NoTransDecoderORF} {RNA1310_45533}
10. MligTC455_11758 6 0.12 Mlig455_051325

Neo: -

Age: -

 ZNRF3 0.957 - - - - 0.957 - Mlig455_051325 {REF} {Length: 2005} {Pfam: Ring finger domain [PF13639.8, score=47.1]; RING-like zinc finger [PF17123.7, score=44.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=34.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.0]; RING-H2 zinc finger domain [PF12678.9, score=28.8]; zinc-RING finger domain [PF14634.8, score=25.0]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=24.1]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=21.4]; RING-type zinc-finger [PF13445.8, score=20.9]; ZNRF-3 Ectodomain [PF18212.3, score=20.6]} {Human: ENSG00000183579, ZNRF3, zinc and ring finger 3, [Score=91.3, Expect=2e-19]} {Mouse: ENSMUSG00000041961, Znrf3, zinc and ring finger 3, [Score=92.0, Expect=9e-20]} {Dmel: FBgn0052850, CG32850, [Score=60.8, Expect=5e-11]} {Celegans: WBGene00023404, plr-1, Probable E3 ubiquitin-protein ligase plr-1, [RH, Score=68.2, Expect=2e-12]} {Smed: dd_Smed_v6_2844_0_1, dd_Smed_v6_2844_0_1, [Score=70.9, Expect=1e-13]} {RNA1509_33706} {RNA1310_73291} {RNA815_59739}
11. MligTC455_38524 4 0.09 Mlig455_047855

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_047855 {REF} {Length: 3129} {RNA1310_22427} {RNA815_13338}
12. MligTC455_06407 25 0.52 Mlig455_055014

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_055014 {REF} {Length: 492} {NoTransDecoderORF}
13. MligTC455_32232 9 0.19 Mlig455_041146, Mlig455_070069

Neo: -

Age: -

 KCNA1, KCNA2 0.95 - - - - 0.950 -

Mlig455_041146 {REF} {Length: 2621} {Pfam: Ion transport protein [PF00520.33, score=142.2]; BTB/POZ domain [PF02214.24, score=79.6]; Ion channel [PF07885.18, score=52.7]} {Human: ENSG00000111262, KCNA1, potassium voltage-gated channel subfamily A member 1, [Score=385, Expect=1e-128]; ENSG00000177301, KCNA2, potassium voltage-gated channel subfamily A member 2, [Score=385, Expect=3e-128]; ENSG00000182255, KCNA4, potassium voltage-gated channel subfamily A member 4, [Score=372, Expect=3e-121]; ENSG00000177272, KCNA3, potassium voltage-gated channel subfamily A member 3, [Score=371, Expect=7e-122]} {Mouse: ENSMUSG00000040724, Kcna2, potassium voltage-gated channel, shaker-related subfamily, member 2, [Score=385, Expect=1e-128]; ENSMUSG00000047976, Kcna1, potassium voltage-gated channel, shaker-related subfamily, member 1, [Score=385, Expect=1e-128]; ENSMUSG00000042604, Kcna4, potassium voltage-gated channel, shaker-related subfamily, member 4, [Score=372, Expect=3e-121]; ENSMUSG00000047959, Kcna3, potassium voltage-gated channel, shaker-related subfamily, member 3, [Score=371, Expect=1e-122]} {Dmel: FBgn0003380, Sh, Shaker, [Score=393, Expect=7e-130]} {Celegans: WBGene00014261, shk-1, Potassium voltage-gated channel protein shk-1, [Score=281, Expect=2e-89]} {Smed: dd_Smed_v6_15133_0_1, dd_Smed_v6_15133_0_1, [RH, Score=549, Expect=0.0]} {RNA1509_46497} {RNA1310_11183} {RNA815_45289}

Mlig455_070069 {REF} {Length: 2734} {Pfam: Ion transport protein [PF00520.33, score=142.2]; BTB/POZ domain [PF02214.24, score=79.6]; Ion channel [PF07885.18, score=52.7]} {Human: ENSG00000177301, KCNA2, potassium voltage-gated channel subfamily A member 2, [Score=385, Expect=3e-128]; ENSG00000111262, KCNA1, potassium voltage-gated channel subfamily A member 1, [Score=385, Expect=1e-128]; ENSG00000182255, KCNA4, potassium voltage-gated channel subfamily A member 4, [Score=372, Expect=3e-121]; ENSG00000177272, KCNA3, potassium voltage-gated channel subfamily A member 3, [Score=371, Expect=8e-122]} {Mouse: ENSMUSG00000047976, Kcna1, potassium voltage-gated channel, shaker-related subfamily, member 1, [Score=385, Expect=1e-128]; ENSMUSG00000040724, Kcna2, potassium voltage-gated channel, shaker-related subfamily, member 2, [Score=385, Expect=1e-128]; ENSMUSG00000042604, Kcna4, potassium voltage-gated channel, shaker-related subfamily, member 4, [Score=371, Expect=3e-121]; ENSMUSG00000047959, Kcna3, potassium voltage-gated channel, shaker-related subfamily, member 3, [Score=371, Expect=1e-122]; ENSMUSG00000045534, Kcna5, potassium voltage-gated channel, shaker-related subfamily, member 5, [Score=366, Expect=1e-119]} {Dmel: FBgn0003380, Sh, Shaker, [Score=394, Expect=3e-130]} {Celegans: WBGene00014261, shk-1, Potassium voltage-gated channel protein shk-1, [Score=281, Expect=2e-89]} {Smed: dd_Smed_v6_15133_0_1, dd_Smed_v6_15133_0_1, [RH, Score=549, Expect=0.0]} {RNA1509_46497} {RNA1310_11183} {RNA815_45289}
14. MligTC455_32276 18 0.38 Mlig455_030038, Mlig455_030039

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_030038 {REF} {Length: 1305} {Pfam: Integrase core domain [PF00665.28, score=52.1]; Integrase zinc binding domain [PF17921.3, score=51.0]; H2C2 zinc finger [PF09337.12, score=23.0]; DDE superfamily endonuclease [PF13358.8, score=21.6]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=101, Expect=9e-24]} {RNA1509_60111} {RNA1310_1717.1} {RNA815_20221.1}

Mlig455_030039 {REF} {Length: 2403} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=56.7]} {Smed: dd_Smed_v6_14472_0_32, dd_Smed_v6_14472_0_32, [Score=67.8, Expect=1e-14]} {RNA1509_60111} {RNA1310_1717.1} {RNA815_59678}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA