M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52842

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52842 5 0.10 Mlig455_055679

Neo: -

Age: -

 ANGPTL7 Mlig455_055679 {REF} {Length: 1150} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=103.1]} {Human: ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=86.7, Expect=7e-19]; ENSG00000116147, TNR, tenascin R, [Score=86.7, Expect=2e-18]; ENSG00000120332, TNN, tenascin N, [Score=85.9, Expect=4e-18]; ENSG00000171560, FGA, fibrinogen alpha chain, [Score=82.4, Expect=6e-17]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=85.5, Expect=4e-18]; ENSMUSG00000015829, Tnr, tenascin R, [Score=84.0, Expect=1e-17]; ENSMUSG00000026938, Fcna, ficolin A, [Score=83.6, Expect=5e-18]; ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=82.8, Expect=9e-18]} {Dmel: FBgn0050280, CG30280, [Score=75.1, Expect=2e-15]} {Celegans: WBGene00020516, T15B7.1, [Score=52.8, Expect=1e-07]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=82.4, Expect=1e-17]} {RNA1310_126384}

Cumulative graph for MligTC455_52842

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_52842

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52842 5 0.1 Mlig455_055679

Neo: -

Age: -

 ANGPTL7 2 - - 1.000 - 1.000 - Mlig455_055679 {REF} {Length: 1150} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=103.1]} {Human: ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=86.7, Expect=7e-19]; ENSG00000116147, TNR, tenascin R, [Score=86.7, Expect=2e-18]; ENSG00000120332, TNN, tenascin N, [Score=85.9, Expect=4e-18]; ENSG00000171560, FGA, fibrinogen alpha chain, [Score=82.4, Expect=6e-17]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=85.5, Expect=4e-18]; ENSMUSG00000015829, Tnr, tenascin R, [Score=84.0, Expect=1e-17]; ENSMUSG00000026938, Fcna, ficolin A, [Score=83.6, Expect=5e-18]; ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=82.8, Expect=9e-18]} {Dmel: FBgn0050280, CG30280, [Score=75.1, Expect=2e-15]} {Celegans: WBGene00020516, T15B7.1, [Score=52.8, Expect=1e-07]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=82.4, Expect=1e-17]} {RNA1310_126384}
2. MligTC455_28382 14 0.29 Mlig455_040555

Neo: -

Age: -

 ALKBH3 0.981 - - - - 0.981 - Mlig455_040555 {REF} {Length: 3636} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=62.8]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=86.7, Expect=4e-18]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=82.0, Expect=9e-17]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=73.2, Expect=5e-14]} {RNA1509_23004} {RNA1310_13243} {RNA815_38989}
3. MligTC455_04561 26 0.55 Mlig455_024217

Neo: -

Age: -

 0.978 - - 0.978 - - - Mlig455_024217 {REF} {Length: 523} {NoTransDecoderORF} {RNA1310_66947.1}
4. MligTC455_21860 6 0.12 Mlig455_010976

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_010976 {REF} {Length: 359} {NoTransDecoderORF}
5. MligTC455_12890 22 0.45 Mlig455_047622

Neo: -

Age: -

 0.976 - - 0.976 - - - Mlig455_047622 {REF} {Length: 1683} {Pfam: WSC domain [PF01822.21, score=41.8]; PAN domain [PF00024.28, score=20.7]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=50.8, Expect=4e-07]} {RNA1509_43359} {RNA1310_74815} {RNA815_42544}
6. MligTC455_47168 7 0.15 Mlig455_070741

Neo: -

Age: -

 0.976 - - 0.976 - - - Mlig455_070741 {REF} {Length: 1862} {Pfam: F5/8 type C domain [PF00754.27, score=28.0]} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=57.4, Expect=2e-10]} {RNA1509_34728} {RNA1310_125827} {RNA815_8382}
7. MligTC455_41435 246 5.12 Mlig455_030272, Mlig455_057575

Neo: -

Age: -

Region-enriched R3: 3.359/0.01214
Region-enriched R4: 3.160/0.04631
Region-enriched R5: 2.910/0.01374

 0.975 - - - - 0.975 -

Mlig455_030272 {REF} {Length: 3360} {TRANSSPLICED} {Pfam: Mitochondria-eating protein [PF16026.7, score=25.3]} {RNA1509_23848} {RNA1310_18693} {RNA815_6904}

Mlig455_057575 {REF} {Length: 3377} {TRANSSPLICED} {RNA1509_23848} {RNA1310_18693, RNA1509_23848} {RNA1509_23848, RNA815_6904}
8. MligTC455_28383 13 0.27 Mlig455_061547

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_061547 {REF} {Length: 887} {RNA1509_32111} {RNA1310_40575} {RNA815_7836.1}
9. MligTC455_32232 9 0.19 Mlig455_041146, Mlig455_070069

Neo: -

Age: -

 KCNA1, KCNA2 0.972 - - - - 0.972 -

Mlig455_041146 {REF} {Length: 2621} {Pfam: Ion transport protein [PF00520.33, score=142.2]; BTB/POZ domain [PF02214.24, score=79.6]; Ion channel [PF07885.18, score=52.7]} {Human: ENSG00000111262, KCNA1, potassium voltage-gated channel subfamily A member 1, [Score=385, Expect=1e-128]; ENSG00000177301, KCNA2, potassium voltage-gated channel subfamily A member 2, [Score=385, Expect=3e-128]; ENSG00000182255, KCNA4, potassium voltage-gated channel subfamily A member 4, [Score=372, Expect=3e-121]; ENSG00000177272, KCNA3, potassium voltage-gated channel subfamily A member 3, [Score=371, Expect=7e-122]} {Mouse: ENSMUSG00000040724, Kcna2, potassium voltage-gated channel, shaker-related subfamily, member 2, [Score=385, Expect=1e-128]; ENSMUSG00000047976, Kcna1, potassium voltage-gated channel, shaker-related subfamily, member 1, [Score=385, Expect=1e-128]; ENSMUSG00000042604, Kcna4, potassium voltage-gated channel, shaker-related subfamily, member 4, [Score=372, Expect=3e-121]; ENSMUSG00000047959, Kcna3, potassium voltage-gated channel, shaker-related subfamily, member 3, [Score=371, Expect=1e-122]} {Dmel: FBgn0003380, Sh, Shaker, [Score=393, Expect=7e-130]} {Celegans: WBGene00014261, shk-1, Potassium voltage-gated channel protein shk-1, [Score=281, Expect=2e-89]} {Smed: dd_Smed_v6_15133_0_1, dd_Smed_v6_15133_0_1, [RH, Score=549, Expect=0.0]} {RNA1509_46497} {RNA1310_11183} {RNA815_45289}

Mlig455_070069 {REF} {Length: 2734} {Pfam: Ion transport protein [PF00520.33, score=142.2]; BTB/POZ domain [PF02214.24, score=79.6]; Ion channel [PF07885.18, score=52.7]} {Human: ENSG00000177301, KCNA2, potassium voltage-gated channel subfamily A member 2, [Score=385, Expect=3e-128]; ENSG00000111262, KCNA1, potassium voltage-gated channel subfamily A member 1, [Score=385, Expect=1e-128]; ENSG00000182255, KCNA4, potassium voltage-gated channel subfamily A member 4, [Score=372, Expect=3e-121]; ENSG00000177272, KCNA3, potassium voltage-gated channel subfamily A member 3, [Score=371, Expect=8e-122]} {Mouse: ENSMUSG00000047976, Kcna1, potassium voltage-gated channel, shaker-related subfamily, member 1, [Score=385, Expect=1e-128]; ENSMUSG00000040724, Kcna2, potassium voltage-gated channel, shaker-related subfamily, member 2, [Score=385, Expect=1e-128]; ENSMUSG00000042604, Kcna4, potassium voltage-gated channel, shaker-related subfamily, member 4, [Score=371, Expect=3e-121]; ENSMUSG00000047959, Kcna3, potassium voltage-gated channel, shaker-related subfamily, member 3, [Score=371, Expect=1e-122]; ENSMUSG00000045534, Kcna5, potassium voltage-gated channel, shaker-related subfamily, member 5, [Score=366, Expect=1e-119]} {Dmel: FBgn0003380, Sh, Shaker, [Score=394, Expect=3e-130]} {Celegans: WBGene00014261, shk-1, Potassium voltage-gated channel protein shk-1, [Score=281, Expect=2e-89]} {Smed: dd_Smed_v6_15133_0_1, dd_Smed_v6_15133_0_1, [RH, Score=549, Expect=0.0]} {RNA1509_46497} {RNA1310_11183} {RNA815_45289}
10. MligTC455_42931 29 0.6 Mlig455_031822

Neo: -

Age: -

 WSCD2 0.972 - - 0.972 - - - Mlig455_031822 {REF} {Length: 3349} {Pfam: WSC domain [PF01822.21, score=55.4]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [Score=52.0, Expect=2e-07]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [Score=52.0, Expect=1e-07]} {RNA1509_43359} {RNA1310_74815} {RNA815_51632}
11. MligTC455_14082 30 0.62 Mlig455_062323

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_062323 {REF} {Length: 874} {TRANSSPLICED} {Pfam: Asparaginase, N-terminal [PF00710.22, score=55.9]} {RNA1310_56701}
12. MligTC455_13719 16 0.33 Mlig455_001255, Mlig455_059950

Neo: -

Age: -

 0.969 - - - - 0.969 -

Mlig455_001255 {REF} {Length: 2660}

Mlig455_059950 {REF} {Length: 2483}
13. MligTC455_19525 148 3.08 Mlig455_065980

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_065980 {REF} {Length: 561} {NoTransDecoderORF} {RNA1509_59498} {RNA1310_83003.1} {RNA815_33746.1}
14. MligTC455_40543 23 0.48 Mlig455_040704

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_040704 {REF} {Length: 524} {NoTransDecoderORF} {RNA1310_108311}
15. MligTC455_37314 28 0.59 Mlig455_020645

Neo: -

Age: -

 CALM2 0.958 - - 0.958 - - - Mlig455_020645 {REF} {Length: 1006} {Pfam: EF-hand domain pair [PF13499.8, score=22.0]; EF-hand domain [PF14658.8, score=19.6]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=65.9, Expect=3e-13]; ENSG00000198668, CALM1, calmodulin 1, [Score=65.9, Expect=3e-13]; ENSG00000160014, CALM3, calmodulin 3, [Score=65.9, Expect=3e-13]; ENSG00000178363, CALML3, calmodulin like 3, [Score=65.1, Expect=6e-13]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=66.6, Expect=3e-13]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=65.9, Expect=2e-13]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=65.9, Expect=2e-13]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=67.8, Expect=3e-14]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=67.8, Expect=2e-14]} {Smed: dd_Smed_v6_5491_0_1, dd_Smed_v6_5491_0_1, [Score=109, Expect=5e-30]} {RNA1310_33365} {RNA815_27013}
16. MligTC455_09742 16 0.34 Mlig455_014969

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_014969 {REF} {Length: 1496} {NoTransDecoderORF} {RNA1509_32402} {RNA1310_758.2} {RNA815_14013}
17. MligTC455_11758 6 0.12 Mlig455_051325

Neo: -

Age: -

 ZNRF3 0.954 - - - - 0.954 - Mlig455_051325 {REF} {Length: 2005} {Pfam: Ring finger domain [PF13639.8, score=47.1]; RING-like zinc finger [PF17123.7, score=44.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=34.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.0]; RING-H2 zinc finger domain [PF12678.9, score=28.8]; zinc-RING finger domain [PF14634.8, score=25.0]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=24.1]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=21.4]; RING-type zinc-finger [PF13445.8, score=20.9]; ZNRF-3 Ectodomain [PF18212.3, score=20.6]} {Human: ENSG00000183579, ZNRF3, zinc and ring finger 3, [Score=91.3, Expect=2e-19]} {Mouse: ENSMUSG00000041961, Znrf3, zinc and ring finger 3, [Score=92.0, Expect=9e-20]} {Dmel: FBgn0052850, CG32850, [Score=60.8, Expect=5e-11]} {Celegans: WBGene00023404, plr-1, Probable E3 ubiquitin-protein ligase plr-1, [RH, Score=68.2, Expect=2e-12]} {Smed: dd_Smed_v6_2844_0_1, dd_Smed_v6_2844_0_1, [Score=70.9, Expect=1e-13]} {RNA1509_33706} {RNA1310_73291} {RNA815_59739}
18. MligTC455_38524 4 0.09 Mlig455_047855

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_047855 {REF} {Length: 3129} {RNA1310_22427} {RNA815_13338}
19. MligTC455_10934 7 0.16 Mlig455_055119

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_055119 {REF} {Length: 1767} {TRANSSPLICED} {Pfam: CUB domain [PF00431.22, score=34.4]; CUB-like domain [PF02408.22, score=21.5]} {Mouse: ENSMUSG00000022311, Csmd3, CUB and Sushi multiple domains 3, [Score=43.9, Expect=1e-05]} {RNA1509_2515} {RNA1310_26891} {RNA815_3258.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA