M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_15537

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_15537 31 0.64 Mlig455_008578

Neo: -

Age: -

 ARRDC3 Mlig455_008578 {REF} {Length: 3776} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=94.7]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=35.4]; Rgp1 [PF08737.12, score=18.2]} {Human: ENSG00000113369, ARRDC3, arrestin domain containing 3, [Score=107, Expect=8e-25]} {Mouse: ENSMUSG00000074794, Arrdc3, arrestin domain containing 3, [Score=107, Expect=2e-25]} {Dmel: FBgn0037465, CG1105, [Score=70.5, Expect=7e-13]} {Celegans: WBGene00009579, arrd-6, ARRestin Domain protein, [Score=260, Expect=2e-82]} {RNA1509_26120} {RNA1310_31358} {RNA815_43917}

Cumulative graph for MligTC455_15537

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.769 1.139 0.99961 1.00000
RegionR2 4.111 1.139 0.02222 0.16425
RegionR3 2.878 1.139 0.02586 0.27474
RegionR4 -1.573 1.139 0.93091 1.00000
RegionR5 0.173 1.139 0.65710 1.00000
RegionR6 1.139 1.139 0.40248 0.97369
RegionR7 -1.557 1.139 0.99981 1.00000
RegionR8 -1.402 1.139 0.99976 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.502 1.139 0.99980 1.00000
RegenerationR2 1.062 1.139 0.27513 0.72017
RegenerationR3 2.239 1.139 0.06101 0.41957
RegenerationR4 2.902 1.139 0.06636 0.41096
RegenerationR5 1.875 1.139 0.11238 0.50595
RegenerationR6 2.177 1.139 0.13824 0.45610
RegenerationBL 0.611 1.139 1.00000 1.00000
RegenerationTP 5.251 1.139 0.04570 0.35439


Genes with expression patterns similar to MligTC455_15537

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_15537 31 0.64 Mlig455_008578

Neo: -

Age: -

 ARRDC3 4 1.000 - - 1.000 1.000 1.000 Mlig455_008578 {REF} {Length: 3776} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=94.7]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=35.4]; Rgp1 [PF08737.12, score=18.2]} {Human: ENSG00000113369, ARRDC3, arrestin domain containing 3, [Score=107, Expect=8e-25]} {Mouse: ENSMUSG00000074794, Arrdc3, arrestin domain containing 3, [Score=107, Expect=2e-25]} {Dmel: FBgn0037465, CG1105, [Score=70.5, Expect=7e-13]} {Celegans: WBGene00009579, arrd-6, ARRestin Domain protein, [Score=260, Expect=2e-82]} {RNA1509_26120} {RNA1310_31358} {RNA815_43917}
2. MligTC455_37636 52 1.08 Mlig455_056163, Mlig455_058738

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.265

 2.527 - - - 0.977 0.800 0.750

Mlig455_056163 {REF} {Length: 233} {NoTransDecoderORF} {RNA1310_37769} {RNA815_52459}

Mlig455_058738 {REF} {Length: 2113} {NoTransDecoderORF} {RNA1509_34079} {RNA1310_61747} {RNA815_21592.1}
3. MligTC455_14545 17 0.36 Mlig455_035976, Mlig455_047638

Neo: -

Age: -

 0.986 - - - 0.986 - -

Mlig455_035976 {REF} {Length: 918} {RNA1310_117332}

Mlig455_047638 {REF} {Length: 581} {NoTransDecoderORF} {RNA1310_117332}
4. MligTC455_15190 94 1.97 Mlig455_041453, Mlig455_041498

Neo: -

Age: -

 0.986 - - - 0.986 - -

Mlig455_041453 {REF} {Length: 2347} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=25.7]; Proline-rich membrane anchor 1 [PF16101.7, score=22.8]} {Smed: dd_Smed_v6_8885_0_1, dd_Smed_v6_8885_0_1, [RH, Score=177, Expect=2e-50]} {RNA1509_21593} {RNA1310_74216} {RNA815_59334}

Mlig455_041498 {REF} {Length: 1723} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=25.8]; Proline-rich membrane anchor 1 [PF16101.7, score=23.1]} {Dmel: FBgn0039747, AdoR, Adenosine receptor, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_8885_0_1, dd_Smed_v6_8885_0_1, [RH, Score=177, Expect=2e-50]} {RNA1310_74216} {RNA815_59334}
5. MligTC455_45888 88 1.83 Mlig455_017836

Neo: Int S/G2/M

Age: -

 0.983 - - - 0.983 - - Mlig455_017836 {REF} {Length: 2048} {TRANSSPLICED} {RNA1509_40093} {RNA1310_27808.1, RNA1509_40093} {RNA1509_40093, RNA815_9172.1}
6. MligTC455_22779 18 0.37 Mlig455_047287, Mlig455_069329

Neo: -

Age: -

 0.979 - - - 0.979 - -

Mlig455_047287 {REF} {Length: 1798} {RNA1509_49869} {RNA1310_2182} {RNA815_46359}

Mlig455_069329 {REF} {Length: 1660} {RNA1509_49869} {RNA1310_2182} {RNA815_46359}
7. MligTC455_09204 14 0.3 Mlig455_004142

Neo: -

Age: Down-Down-Up

 ANGPTL2 0.977 - - - 0.977 - - Mlig455_004142 {REF} {Length: 1465} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=119.4]} {Human: ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=113, Expect=3e-27]; ENSG00000120332, TNN, tenascin N, [Score=112, Expect=2e-26]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=108, Expect=2e-25]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=116, Expect=5e-28]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=113, Expect=2e-27]} {Dmel: FBgn0051832, CG31832, [Score=89.7, Expect=1e-20]} {Celegans: WBGene00020516, T15B7.1, [Score=67.4, Expect=3e-12]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=97.4, Expect=5e-22]} {RNA1509_5879} {RNA1310_25624.2} {RNA815_10978}
8. MligTC455_30611 129 2.68 Mlig455_031173

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.392

Region-enriched R8: 4.530/0.01124

 ITPR1 0.973 - - - - 0.973 - Mlig455_031173 {REF} {Length: 9349} {Pfam: RIH domain [PF01365.23, score=93.2]; Inositol 1,4,5-trisphosphate/ryanodine receptor [PF08709.13, score=76.6]; RyR and IP3R Homology associated [PF08454.13, score=72.8]; MIR domain [PF02815.21, score=44.1]; Ion transport protein [PF00520.33, score=31.9]} {Human: ENSG00000150995, ITPR1, inositol 1,4,5-trisphosphate receptor type 1, [Score=239, Expect=4e-62]; ENSG00000123104, ITPR2, inositol 1,4,5-trisphosphate receptor type 2, [Score=229, Expect=2e-59]} {Mouse: ENSMUSG00000042644, Itpr3, inositol 1,4,5-triphosphate receptor 3, [Score=241, Expect=7e-63]} {Dmel: FBgn0010051, Itp-r83A, Inositol 1,4,5,-tris-phosphate receptor, [Score=202, Expect=3e-51]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=174, Expect=7e-43]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [Score=1868, Expect=0.0]} {RNA1509_5518} {RNA1310_129.1} {RNA815_62.1}
9. MligTC455_16877 128 2.68 Mlig455_025721

Neo: Irradiation

Age: -

 RBCK1 0.967 - - - - 0.967 - Mlig455_025721 {REF} {Length: 4359} {Pfam: Zn-finger in Ran binding protein and others [PF00641.20, score=30.1]; Snare region anchored in the vesicle membrane C-terminus [PF12352.10, score=18.9]} {Human: ENSG00000125826, RBCK1, RANBP2-type and C3HC4-type zinc finger containing 1, [Score=58.5, Expect=7e-09]} {Mouse: ENSMUSG00000027466, Rbck1, RanBP-type and C3HC4-type zinc finger containing 1, [Score=50.1, Expect=6e-06]} {Smed: dd_Smed_v6_1293_0_1, dd_Smed_v6_1293_0_1, [Score=48.9, Expect=6e-06]} {RNA1509_38232} {RNA1310_12341.1} {RNA815_19924}
10. MligTC455_37809 28 0.58 Mlig455_053421

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_053421 {REF} {Length: 1283} {RNA1509_44223} {RNA1310_90388} {RNA815_47782}
11. MligTC455_53119 15 0.31 Mlig455_038845

Neo: -

Age: -

 0.963 - - - 0.963 - - Mlig455_038845 {REF} {Length: 938} {NoTransDecoderORF} {RNA1509_39174, RNA1509_46207} {RNA1310_79866, RNA1509_46207} {RNA1509_46207, RNA815_34070.1}
12. MligTC455_43211 366 7.63 Mlig455_007539, Mlig455_024793

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.476

Region-enriched R8: 3.401/0.00304

 ZNF16 0.959 - - - - 0.959 -

Mlig455_007539 {REF} {Length: 1727} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=52.5]; Zinc finger, C2H2 type [PF00096.28, score=48.2]; Zinc-finger of C2H2 type [PF12874.9, score=35.0]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=33.0]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=24.0]; Zinc-fingers and homeoboxes C2H2 finger domain [PF18387.3, score=20.6]} {Human: ENSG00000170631, ZNF16, zinc finger protein 16, [Score=85.1, Expect=4e-17]; ENSG00000213973, ZNF99, zinc finger protein 99, [Score=81.6, Expect=6e-16]; ENSG00000178175, ZNF366, zinc finger protein 366, [Score=81.3, Expect=8e-16]; ENSG00000204859, ZBTB48, zinc finger and BTB domain containing 48, [Score=81.3, Expect=7e-16]; ENSG00000180787, ZFP3, ZFP3 zinc finger protein, [Score=80.9, Expect=7e-16]; ENSG00000196350, ZNF729, zinc finger protein 729, [Score=80.9, Expect=1e-15]} {Mouse: ENSMUSG00000059897, Zfp930, zinc finger protein 930, [Score=84.0, Expect=4e-17]; ENSMUSG00000050919, Zfp366, zinc finger protein 366, [Score=81.3, Expect=4e-16]; ENSMUSG00000028952, Zbtb48, zinc finger and BTB domain containing 48, [Score=80.5, Expect=8e-16]} {Dmel: FBgn0038550, CG17801, [Score=67.4, Expect=6e-12]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [Score=53.9, Expect=9e-08]} {Smed: dd_Smed_v6_11840_0_1, dd_Smed_v6_11840_0_1, [Score=60.5, Expect=6e-10]} {RNA1509_14767} {RNA1310_5349} {RNA815_28876}

Mlig455_024793 {REF} {Length: 1727} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=52.5]; Zinc finger, C2H2 type [PF00096.28, score=48.2]; Zinc-finger of C2H2 type [PF12874.9, score=35.0]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=33.0]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=24.0]; Zinc-fingers and homeoboxes C2H2 finger domain [PF18387.3, score=20.6]} {Human: ENSG00000170631, ZNF16, zinc finger protein 16, [Score=85.1, Expect=4e-17]; ENSG00000213973, ZNF99, zinc finger protein 99, [Score=81.6, Expect=6e-16]; ENSG00000178175, ZNF366, zinc finger protein 366, [Score=81.3, Expect=8e-16]; ENSG00000204859, ZBTB48, zinc finger and BTB domain containing 48, [Score=81.3, Expect=7e-16]; ENSG00000180787, ZFP3, ZFP3 zinc finger protein, [Score=80.9, Expect=7e-16]; ENSG00000196350, ZNF729, zinc finger protein 729, [Score=80.9, Expect=1e-15]} {Mouse: ENSMUSG00000059897, Zfp930, zinc finger protein 930, [Score=84.0, Expect=4e-17]; ENSMUSG00000050919, Zfp366, zinc finger protein 366, [Score=81.3, Expect=4e-16]; ENSMUSG00000028952, Zbtb48, zinc finger and BTB domain containing 48, [Score=80.5, Expect=8e-16]} {Dmel: FBgn0038550, CG17801, [Score=67.4, Expect=6e-12]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [Score=53.9, Expect=9e-08]} {Smed: dd_Smed_v6_11840_0_1, dd_Smed_v6_11840_0_1, [Score=60.5, Expect=6e-10]} {RNA1509_14767} {RNA1310_5349, RNA1509_14767} {RNA1509_14767, RNA815_28876}
13. MligTC455_01448 15 0.31 Mlig455_063614

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_063614 {REF} {Length: 27} {TRANSSPLICED} {NoTransDecoderORF}
14. MligTC455_11876 18 0.37 Mlig455_039465

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_039465 {REF} {Length: 1275} {tRNA: Val(AAC),pseudo, score=37.3} {RNA1509_52678} {RNA1310_117665} {RNA815_3941}
15. MligTC455_16627 108 2.24 Mlig455_059126

Neo: -

Age: Up-Down-Up

Region-enriched R3: 4.426/0.00046

 0.955 - - - 0.955 - - Mlig455_059126 {REF} {Length: 1776} {Pfam: NAD dependent epimerase/dehydratase family [PF01370.23, score=41.0]; Male sterility protein [PF07993.14, score=36.0]; 3-beta hydroxysteroid dehydrogenase/isomerase family [PF01073.21, score=32.2]; RmlD substrate binding domain [PF04321.19, score=23.2]; GDP-mannose 4,6 dehydratase [PF16363.7, score=20.2]} {Smed: dd_Smed_v6_12075_0_1, dd_Smed_v6_12075_0_1, [Score=55.5, Expect=1e-08]} {RNA1509_43778, RNA1509_44711} {RNA1310_30985, RNA1509_43778} {RNA1509_43778, RNA815_13916}
16. MligTC455_07285 48 1 Mlig455_045441

Neo: -

Age: -

 0.954 - - - 0.954 - - Mlig455_045441 {REF} {Length: 504} {NoTransDecoderORF}
17. MligTC455_12200 402 8.38 Mlig455_056707, Mlig455_060314

Neo: -

Age: Down-Up-Up

Region-enriched R3: 6.181/0.00003
Region-enriched R4: 4.726/0.01199

 0.951 - - - 0.951 - -

Mlig455_056707 {REF} {Length: 1565} {RNA1509_33681} {RNA1310_21613} {RNA815_8987.1}

Mlig455_060314 {REF} {Length: 1642} {RNA1509_33681} {RNA1310_21613, RNA1509_33681} {RNA1509_33681, RNA815_8987.1}
18. MligTC455_00322 13 0.26 Mlig455_027549

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_027549 {REF} {Length: 846} {NoTransDecoderORF} {RNA1310_22096}
19. MligTC455_04446 242 5.05 Mlig455_060896

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_060896 {REF} {Length: 368} {NoTransDecoderORF} {RNA1310_146995}
20. MligTC455_41467 187 3.9 Mlig455_054098

Neo: Int S/G2/M

Age: -

 DCAF13 0.95 - - - - 0.950 - Mlig455_054098 {REF} {Length: 3704} {TRANSSPLICED} {Pfam: Sof1-like domain [PF04158.16, score=89.3]; WD domain, G-beta repeat [PF00400.34, score=64.5]; Beta-lactamase superfamily domain [PF12706.9, score=55.7]; Metallo-beta-lactamase superfamily [PF00753.29, score=38.1]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=19.4]} {Human: ENSG00000164934, DCAF13, DDB1 and CUL4 associated factor 13, [RH, Score=383, Expect=3e-125]} {Mouse: ENSMUSG00000022300, Dcaf13, DDB1 and CUL4 associated factor 13, [RH, Score=394, Expect=1e-129]; ENSMUSG00000106903, Dcaf13, DDB1 and CUL4 associated factor 13, [RH, Score=394, Expect=1e-129]} {Dmel: FBgn0036500, CG7275, [RH, Score=372, Expect=2e-121]} {Celegans: WBGene00022742, ZK430.7, [RH, Score=313, Expect=7e-99]} {Smed: dd_Smed_v6_6405_0_1, dd_Smed_v6_6405_0_1, [RH, Score=283, Expect=1e-87]} {RNA1509_13637} {RNA1310_20401} {RNA815_8317}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA