M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41467

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41467 187 3.90 Mlig455_054098

Neo: Int S/G2/M

Age: -

 DCAF13 Mlig455_054098 {REF} {Length: 3704} {TRANSSPLICED} {Pfam: Sof1-like domain [PF04158.16, score=89.3]; WD domain, G-beta repeat [PF00400.34, score=64.5]; Beta-lactamase superfamily domain [PF12706.9, score=55.7]; Metallo-beta-lactamase superfamily [PF00753.29, score=38.1]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=19.4]} {Human: ENSG00000164934, DCAF13, DDB1 and CUL4 associated factor 13, [RH, Score=383, Expect=3e-125]} {Mouse: ENSMUSG00000022300, Dcaf13, DDB1 and CUL4 associated factor 13, [RH, Score=394, Expect=1e-129]; ENSMUSG00000106903, Dcaf13, DDB1 and CUL4 associated factor 13, [RH, Score=394, Expect=1e-129]} {Dmel: FBgn0036500, CG7275, [RH, Score=372, Expect=2e-121]} {Celegans: WBGene00022742, ZK430.7, [RH, Score=313, Expect=7e-99]} {Smed: dd_Smed_v6_6405_0_1, dd_Smed_v6_6405_0_1, [RH, Score=283, Expect=1e-87]} {RNA1509_13637} {RNA1310_20401} {RNA815_8317}

Cumulative graph for MligTC455_41467

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.331 2.799 0.25690 0.90491
RegionR2 0.871 2.799 0.43063 0.82080
RegionR3 1.061 2.799 0.23077 0.77213
RegionR4 1.571 2.799 0.12087 0.34839
RegionR5 1.018 2.799 0.22967 0.53590
RegionR6 0.3 2.799 0.72897 1.00000
RegionR7 0.348 2.799 0.71935 1.00000
RegionR8 0.163 2.799 0.81062 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.685 2.799 0.99988 1.00000
RegenerationR2 0.425 2.799 0.47102 0.85817
RegenerationR3 -0.017 2.799 0.97659 1.00000
RegenerationR4 -0.34 2.799 0.64028 0.92791
RegenerationR5 -0.699 2.799 0.26733 0.69867
RegenerationR6 -0.125 2.799 0.86748 1.00000
RegenerationBL -4.851 2.799 0.03475 0.20968
RegenerationTP -1.483 2.799 0.22318 0.66683


Genes with expression patterns similar to MligTC455_41467

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41467 187 3.9 Mlig455_054098

Neo: Int S/G2/M

Age: -

 DCAF13 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_054098 {REF} {Length: 3704} {TRANSSPLICED} {Pfam: Sof1-like domain [PF04158.16, score=89.3]; WD domain, G-beta repeat [PF00400.34, score=64.5]; Beta-lactamase superfamily domain [PF12706.9, score=55.7]; Metallo-beta-lactamase superfamily [PF00753.29, score=38.1]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=19.4]} {Human: ENSG00000164934, DCAF13, DDB1 and CUL4 associated factor 13, [RH, Score=383, Expect=3e-125]} {Mouse: ENSMUSG00000022300, Dcaf13, DDB1 and CUL4 associated factor 13, [RH, Score=394, Expect=1e-129]; ENSMUSG00000106903, Dcaf13, DDB1 and CUL4 associated factor 13, [RH, Score=394, Expect=1e-129]} {Dmel: FBgn0036500, CG7275, [RH, Score=372, Expect=2e-121]} {Celegans: WBGene00022742, ZK430.7, [RH, Score=313, Expect=7e-99]} {Smed: dd_Smed_v6_6405_0_1, dd_Smed_v6_6405_0_1, [RH, Score=283, Expect=1e-87]} {RNA1509_13637} {RNA1310_20401} {RNA815_8317}
2. MligTC455_53312 380 7.92 Mlig455_038154, Mlig455_038259

Neo: -

Age: -

 EPN1 1.691 - - - - 0.962 0.729

Mlig455_038154 {REF} {Length: 2384} {TRANSSPLICED} {Pfam: ENTH domain [PF01417.22, score=144.6]; ANTH domain [PF07651.18, score=20.6]} {Human: ENSG00000063245, EPN1, epsin 1, [Score=222, Expect=1e-66]} {Mouse: ENSMUSG00000035203, Epn1, epsin 1, [Score=222, Expect=1e-66]} {Dmel: FBgn0028582, lqf, liquid facets, [Score=226, Expect=5e-68]} {Celegans: WBGene00001329, epn-1, EPsiN (Endocytic protein) homolog, [Score=216, Expect=2e-65]} {Smed: dd_Smed_v6_5602_0_2, dd_Smed_v6_5602_0_2, [Score=222, Expect=4e-70]} {RNA1509_26311} {RNA1310_18422} {RNA815_9905.1}

Mlig455_038259 {REF} {Length: 2385} {TRANSSPLICED} {Pfam: ENTH domain [PF01417.22, score=144.6]; ANTH domain [PF07651.18, score=20.6]} {Human: ENSG00000063245, EPN1, epsin 1, [Score=222, Expect=1e-66]} {Mouse: ENSMUSG00000035203, Epn1, epsin 1, [Score=222, Expect=1e-66]} {Dmel: FBgn0028582, lqf, liquid facets, [Score=226, Expect=5e-68]} {Celegans: WBGene00001329, epn-1, EPsiN (Endocytic protein) homolog, [Score=216, Expect=2e-65]} {Smed: dd_Smed_v6_5602_0_2, dd_Smed_v6_5602_0_2, [Score=222, Expect=4e-70]} {RNA1509_26311} {RNA1310_18422, RNA1509_26311} {RNA1509_26311, RNA815_9905.1}
3. MligTC455_28052 115 2.4 Mlig455_031896, Mlig455_056076

Neo: -

Age: Up-Up-Down

 1.662 - - 0.712 - 0.950 -

Mlig455_031896 {REF} {Length: 3140} {TRANSSPLICED} {RNA1509_58475} {RNA1310_22436} {RNA815_11429}

Mlig455_056076 {REF} {Length: 4211} {TRANSSPLICED} {RNA1509_58475} {RNA1310_12129} {RNA815_7897}
4. MligTC455_11339 12 0.25 Mlig455_039521

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_039521 {REF} {Length: 790} {Pfam: DDE superfamily endonuclease [PF13358.8, score=65.5]} {Smed: dd_Smed_v6_5882_0_1, dd_Smed_v6_5882_0_1, [Score=70.9, Expect=2e-14]} {RNA1509_17943} {RNA1310_32892.1} {RNA815_15636}
5. MligTC455_30956 236 4.92 Mlig455_011971, Mlig455_068353

Neo: -

Age: -

 0.972 - - - - 0.972 -

Mlig455_011971 {REF} {Length: 4032} {TRANSSPLICED} {RNA1509_10225} {RNA1310_3653.1} {RNA815_1165}

Mlig455_068353 {REF} {Length: 5735} {TRANSSPLICED} {RNA1509_30964} {RNA1310_3653.1} {RNA815_1165}
6. MligTC455_32737 100 2.08 Mlig455_024781, Mlig455_053522

Neo: -

Age: Up-Down-Down

 NYNRIN 0.971 - - - - 0.971 -

Mlig455_024781 {REF} {Length: 6075} {Pfam: Integrase core domain [PF00665.28, score=47.6]; Integrase core domain [PF13683.8, score=22.1]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=53.5, Expect=1e-06]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=50.1, Expect=9e-06]} {Smed: dd_Smed_v6_94688_0_1, dd_Smed_v6_94688_0_1, [Score=59.3, Expect=5e-11]} {RNA1509_9393} {RNA1310_740.1} {RNA815_163.1}

Mlig455_053522 {REF} {Length: 941} {Pfam: Integrase core domain [PF00665.28, score=47.7]} {RNA1310_30681} {RNA815_55649}
7. MligTC455_14761 47 0.99 Mlig455_059635

Neo: -

Age: Down-Up-Down

 RNF150 0.97 - - - - 0.970 - Mlig455_059635 {REF} {Length: 1851} {Pfam: Ring finger domain [PF13639.8, score=41.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.8]; RING-type zinc-finger [PF13445.8, score=32.6]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=31.6]; RING-H2 zinc finger domain [PF12678.9, score=31.1]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.2]; Prokaryotic RING finger family 4 [PF14447.8, score=27.0]; zinc-RING finger domain [PF14634.8, score=26.0]; RING-like zinc finger [PF17123.7, score=25.5]; Zinc-ribbon, C4HC2 type [PF17120.7, score=19.0]} {Human: ENSG00000170153, RNF150, ring finger protein 150, [Score=57.4, Expect=9e-09]; ENSG00000113269, RNF130, ring finger protein 130, [Score=57.4, Expect=1e-08]; ENSG00000159461, AMFR, autocrine motility factor receptor, [Score=55.5, Expect=3e-08]} {Mouse: ENSMUSG00000020376, Rnf130, ring finger protein 130, [Score=57.8, Expect=6e-09]; ENSMUSG00000047747, Rnf150, ring finger protein 150, [Score=55.8, Expect=3e-08]; ENSMUSG00000031751, Amfr, autocrine motility factor receptor, [Score=55.1, Expect=6e-08]} {Dmel: FBgn0034312, CG10916, [Score=58.2, Expect=2e-09]} {Celegans: WBGene00009164, hrdl-1, E3 ubiquitin-protein ligase hrd-like protein 1, [Score=52.0, Expect=4e-07]} {Smed: dd_Smed_v6_5532_0_1, dd_Smed_v6_5532_0_1, [Score=57.8, Expect=3e-09]} {RNA1509_44562} {RNA1310_19615.1} {RNA815_8630}
8. MligTC455_30927 23 0.47 Mlig455_065470

Neo: -

Age: Up-Down-Up

 0.97 - - - - 0.970 - Mlig455_065470 {REF} {Length: 3607} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=29.9]} {Smed: dd_Smed_v6_26560_0_2, dd_Smed_v6_26560_0_2, [Score=78.6, Expect=7e-16]} {RNA1509_36146} {RNA1310_75199} {RNA815_131.5}
9. MligTC455_09107 11 0.24 Mlig455_059945

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_059945 {REF} {Length: 465} {NoTransDecoderORF} {RNA1509_58333} {RNA1310_141885} {RNA815_39121}
10. MligTC455_30886 48 1 Mlig455_009167, Mlig455_009178

Neo: -

Age: logFC(26M/2M)=-0.423

 0.968 - - - - 0.968 -

Mlig455_009167 {REF} {Length: 2411} {RNA1509_53360} {RNA1310_36756} {RNA815_25718}

Mlig455_009178 {REF} {Length: 2996} {RNA1509_53360} {RNA1310_10408.1} {RNA815_1194.1}
11. MligTC455_47771 12 0.25 Mlig455_034045, Mlig455_060426

Neo: -

Age: -

 CHRNA6, CHRNA9 0.965 - - - - 0.965 -

Mlig455_034045 {REF} {Length: 1365} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=149.2]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=60.2]} {Human: ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=206, Expect=7e-61]; ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=205, Expect=1e-60]; ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=203, Expect=3e-60]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=202, Expect=1e-59]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=200, Expect=1e-58]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=200, Expect=1e-58]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=200, Expect=1e-60]} {Mouse: ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=209, Expect=1e-62]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=206, Expect=3e-61]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=203, Expect=4e-60]; ENSMUSG00000066279, Chrna10, cholinergic receptor, nicotinic, alpha polypeptide 10, [Score=201, Expect=8e-60]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=200, Expect=5e-59]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=217, Expect=8e-65]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=193, Expect=2e-56]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=199, Expect=2e-58]} {RNA1310_15334} {RNA815_16260.2}

Mlig455_060426 {REF} {Length: 2601} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=149.4]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=46.3]} {Human: ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=200, Expect=3e-59]; ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=198, Expect=8e-59]; ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=195, Expect=4e-57]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=193, Expect=3e-56]} {Mouse: ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=204, Expect=6e-61]; ENSMUSG00000066279, Chrna10, cholinergic receptor, nicotinic, alpha polypeptide 10, [Score=197, Expect=1e-58]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=196, Expect=1e-57]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=205, Expect=1e-60]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=183, Expect=5e-53]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [Score=184, Expect=3e-53]} {RNA1310_15334} {RNA815_16260.2}
12. MligTC455_10699 95 1.98 Mlig455_004823, Mlig455_004902, Mlig455_040345

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.373

Region-enriched R2: 5.018/0.04137

 0.964 - - - - 0.964 -

Mlig455_004823 {REF} {Length: 4645} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=71.3]; gag-polyprotein putative aspartyl protease [PF13975.8, score=35.6]; Aspartyl protease [PF13650.8, score=26.9]; Retroviral aspartyl protease [PF00077.22, score=22.2]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=149, Expect=4e-38]} {RNA1509_54157} {RNA1310_5940.1} {RNA815_7551.1}

Mlig455_004902 {REF} {Length: 4647} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=71.3]; gag-polyprotein putative aspartyl protease [PF13975.8, score=35.6]; Aspartyl protease [PF13650.8, score=26.9]; Retroviral aspartyl protease [PF00077.22, score=22.2]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=149, Expect=4e-38]} {RNA1509_54157} {RNA1310_5940.1} {RNA815_7551.1}

Mlig455_040345 {REF} {Length: 2815} {Pfam: Gag protein p24 C-terminal domain [PF19317.1, score=19.2]} {RNA1509_54157} {RNA1310_5940.1} {RNA815_7551.1}
13. MligTC455_32287 36 0.75 Mlig455_013748

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_013748 {REF} {Length: 6656} {RNA1509_46791} {RNA1310_7603} {RNA815_17474}
14. MligTC455_31864 159 3.31 Mlig455_060554, Mlig455_066902

Neo: -

Age: -

 0.959 - - - - 0.959 -

Mlig455_060554 {REF} {Length: 556} {NoTransDecoderORF} {RNA1310_90364}

Mlig455_066902 {REF} {Length: 4898} {Pfam: M-phase-specific PLK1-interacting protein [PF15502.8, score=24.5]} {RNA1509_44743} {RNA1310_5450.1} {RNA815_8149.1}
15. MligTC455_18095 158 3.3 Mlig455_065869

Neo: Irradiation

Age: Up-Down-Down

 0.958 - - - 0.958 - - Mlig455_065869 {REF} {Length: 1390} {TRANSSPLICED} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=38.8]} {Dmel: FBgn0043002, Chrac-14, Chromatin accessibility complex 14kD protein, [RH, Score=55.8, Expect=9e-10]} {RNA1509_35988} {RNA1310_23246} {RNA815_18085}
16. MligTC455_28594 49 1.02 Mlig455_013080

Neo: -

Age: Up-Up-Down

 0.956 - - - - 0.956 - Mlig455_013080 {REF} {Length: 2167} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17062} {RNA815_22796.1}
17. MligTC455_21336 45 0.93 Mlig455_027703

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_027703 {REF} {Length: 3524} {NoTransDecoderORF} {RNA1509_50956} {RNA1310_80971} {RNA815_6115.1}
18. MligTC455_11575 13 0.28 Mlig455_045729

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_045729 {REF} {Length: 2698} {Pfam: 7 transmembrane receptor (Secretin family) [PF00002.26, score=39.4]} {RNA1509_6409} {RNA1310_984} {RNA815_7594.1}
19. MligTC455_25226 35 0.72 Mlig455_023978

Neo: -

Age: Up-Down-Down

 0.953 - - - - 0.953 - Mlig455_023978 {REF} {Length: 5232} {Pfam: Plasmodium histidine-rich protein (HRPII/III) [PF05403.13, score=23.1]} {RNA1509_49686} {RNA1310_5450.1} {RNA815_16253.2}
20. MligTC455_25309 27 0.56 Mlig455_007405

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_007405 {REF} {Length: 5652} {RNA1509_20101} {RNA1310_66411} {RNA815_42952}
21. MligTC455_38804 39 0.8 Mlig455_017801, Mlig455_026670, Mlig455_063470, Mlig455_069248

Neo: -

Age: -

Region-enriched R4: 3.926/0.02201

 0.952 - - - - 0.952 -

Mlig455_017801 {REF} {Length: 1941} {Pfam: Endonuclease-reverse transcriptase [PF14529.8, score=36.8]; PHD-finger [PF00628.31, score=26.2]} {RNA1509_55687} {RNA1310_13666} {RNA815_21259}

Mlig455_026670 {REF} {Length: 111} {NoTransDecoderORF} {RNA1310_27755.2} {RNA815_50204}

Mlig455_063470 {REF} {Length: 138} {NoTransDecoderORF} {RNA1509_22651} {RNA1310_27755.2} {RNA815_62421}

Mlig455_069248 {REF} {Length: 545} {NoTransDecoderORF} {RNA1509_55687} {RNA1310_13666} {RNA815_21259}
22. MligTC455_49910 39 0.81 Mlig455_070409

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_070409 {REF} {Length: 4207} {RNA1509_10844} {RNA1310_32867} {RNA815_30370}
23. MligTC455_10397 13 0.28 Mlig455_030034

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_030034 {REF} {Length: 2324} {RNA1310_98311} {RNA815_5370}
24. MligTC455_15537 31 0.64 Mlig455_008578

Neo: -

Age: -

 ARRDC3 0.95 - - - - 0.950 - Mlig455_008578 {REF} {Length: 3776} {Pfam: Arrestin (or S-antigen), N-terminal domain [PF00339.31, score=94.7]; Arrestin (or S-antigen), C-terminal domain [PF02752.24, score=35.4]; Rgp1 [PF08737.12, score=18.2]} {Human: ENSG00000113369, ARRDC3, arrestin domain containing 3, [Score=107, Expect=8e-25]} {Mouse: ENSMUSG00000074794, Arrdc3, arrestin domain containing 3, [Score=107, Expect=2e-25]} {Dmel: FBgn0037465, CG1105, [Score=70.5, Expect=7e-13]} {Celegans: WBGene00009579, arrd-6, ARRestin Domain protein, [Score=260, Expect=2e-82]} {RNA1509_26120} {RNA1310_31358} {RNA815_43917}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA