TomoSeq data search

Data search

Results for MligTC455_15776

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_15776	390	8.13	Mlig455_029536, Mlig455_043042	Neo: - Age: -	UBE4A	Mlig455_029536 {REF} {Length: 3713} {TRANSSPLICED} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=107.3]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [Score=62.8, Expect=6e-10]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [Score=65.9, Expect=7e-11]} {Dmel: FBgn0028467, CG11070, [Score=50.1, Expect=4e-06]} {RNA1509_13612} {RNA1310_4756} {RNA815_9670} Mlig455_043042 {REF} {Length: 4810} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=424.1]; U-box domain [PF04564.17, score=96.4]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [RH, Score=441, Expect=8e-137]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [RH, Score=447, Expect=2e-139]} {Dmel: FBgn0028467, CG11070, [RH, Score=373, Expect=1e-112]} {Celegans: WBGene00006734, ufd-2, Probable ubiquitin conjugation factor E4, [Score=171, Expect=2e-43]} {Smed: dd_Smed_v6_4558_0_1, dd_Smed_v6_4558_0_1, [RH, Score=424, Expect=1e-131]} {RNA1509_24289, RNA1509_25538} {RNA1310_4756, RNA1509_24289} {RNA1509_24289, RNA815_9670}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_15776

390

8.13

Mlig455_029536, Mlig455_043042

Neo: -

Age: -

UBE4A

Mlig455_029536 {REF} {Length: 3713} {TRANSSPLICED} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=107.3]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [Score=62.8, Expect=6e-10]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [Score=65.9, Expect=7e-11]} {Dmel: FBgn0028467, CG11070, [Score=50.1, Expect=4e-06]} {RNA1509_13612} {RNA1310_4756} {RNA815_9670}

Mlig455_043042 {REF} {Length: 4810} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=424.1]; U-box domain [PF04564.17, score=96.4]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [RH, Score=441, Expect=8e-137]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [RH, Score=447, Expect=2e-139]} {Dmel: FBgn0028467, CG11070, [RH, Score=373, Expect=1e-112]} {Celegans: WBGene00006734, ufd-2, Probable ubiquitin conjugation factor E4, [Score=171, Expect=2e-43]} {Smed: dd_Smed_v6_4558_0_1, dd_Smed_v6_4558_0_1, [RH, Score=424, Expect=1e-131]} {RNA1509_24289, RNA1509_25538} {RNA1310_4756, RNA1509_24289} {RNA1509_24289, RNA815_9670}

Cumulative graph for MligTC455_15776

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.193	3.475	0.12802	0.72490
RegionR2	1.263	3.475	0.02358	0.17059
RegionR3	0.289	3.475	0.48490	0.98508
RegionR4	-0.444	3.475	0.41128	0.73851
RegionR5	0.02	3.475	0.96342	1.00000
RegionR6	0.283	3.475	0.51550	1.00000
RegionR7	0.173	3.475	0.77502	1.00000
RegionR8	0.607	3.475	0.39978	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	2.855	3.475	0.26187	0.96846
RegenerationR2	-0.04	3.475	0.93226	1.00000
RegenerationR3	0.795	3.475	0.10107	0.50609
RegenerationR4	0.774	3.475	0.11754	0.52282
RegenerationR5	0.86	3.475	0.03708	0.31938
RegenerationR6	1.067	3.475	0.03171	0.22271
RegenerationBL	-0.465	3.475	0.61233	0.95712
RegenerationTP	0.806	3.475	0.23462	0.68042

Genes with expression patterns similar to MligTC455_15776

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_15776	390	8.13	Mlig455_029536, Mlig455_043042	Neo: - Age: -	UBE4A	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_029536 {REF} {Length: 3713} {TRANSSPLICED} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=107.3]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [Score=62.8, Expect=6e-10]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [Score=65.9, Expect=7e-11]} {Dmel: FBgn0028467, CG11070, [Score=50.1, Expect=4e-06]} {RNA1509_13612} {RNA1310_4756} {RNA815_9670} Mlig455_043042 {REF} {Length: 4810} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=424.1]; U-box domain [PF04564.17, score=96.4]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [RH, Score=441, Expect=8e-137]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [RH, Score=447, Expect=2e-139]} {Dmel: FBgn0028467, CG11070, [RH, Score=373, Expect=1e-112]} {Celegans: WBGene00006734, ufd-2, Probable ubiquitin conjugation factor E4, [Score=171, Expect=2e-43]} {Smed: dd_Smed_v6_4558_0_1, dd_Smed_v6_4558_0_1, [RH, Score=424, Expect=1e-131]} {RNA1509_24289, RNA1509_25538} {RNA1310_4756, RNA1509_24289} {RNA1509_24289, RNA815_9670}
2.	MligTC455_15777	553	11.52	Mlig455_043004, Mlig455_043059	Neo: Irradiation Age: logFC(26M/2M)=-0.376	UBE4A	4.684	0.924	0.959	0.963	0.875	0.963	-	Mlig455_043004 {REF} {Length: 5498} {TRANSSPLICED} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=423.3]; U-box domain [PF04564.17, score=96.2]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [RH, Score=440, Expect=2e-136]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [RH, Score=445, Expect=1e-138]} {Dmel: FBgn0028467, CG11070, [Score=373, Expect=9e-113]} {Celegans: WBGene00006734, ufd-2, Probable ubiquitin conjugation factor E4, [Score=171, Expect=2e-43]} {Smed: dd_Smed_v6_4558_0_1, dd_Smed_v6_4558_0_1, [RH, Score=425, Expect=6e-132]} {RNA1509_25538} {RNA1310_4756} {RNA815_9670} Mlig455_043059 {REF} {Length: 7893} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=421.8]; U-box domain [PF04564.17, score=94.6]; Scd6-like Sm domain [PF12701.9, score=90.5]; Ataxin 2 SM domain [PF14438.8, score=32.5]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [RH, Score=439, Expect=3e-132]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [RH, Score=445, Expect=1e-134]} {Dmel: FBgn0028467, CG11070, [RH, Score=371, Expect=6e-109]} {Celegans: WBGene00006734, ufd-2, Probable ubiquitin conjugation factor E4, [Score=169, Expect=2e-42]} {Smed: dd_Smed_v6_4558_0_1, dd_Smed_v6_4558_0_1, [RH, Score=424, Expect=9e-128]} {RNA1509_25538} {RNA1310_4756, RNA1509_25538} {RNA1509_25538, RNA815_9670}
3.	MligTC455_34248	312	6.5	Mlig455_056085	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.730 Region-enriched R3: 2.759/0.03324	MALRD1	0.974	-	-	-	0.974	-	-	Mlig455_056085 {REF} {Length: 27083} {Pfam: MAM domain, meprin/A5/mu [PF00629.25, score=3266.0]; Low-density lipoprotein receptor domain class A [PF00057.20, score=153.1]} {Human: ENSG00000204740, MALRD1, MAM and LDL receptor class A domain containing 1, [Score=416, Expect=5e-116]} {Mouse: ENSMUSG00000075520, Malrd1, MAM and LDL receptor class A domain containing 1, [Score=388, Expect=2e-107]} {Dmel: FBgn0040505, Alk, Anaplastic lymphoma kinase, [Score=98.6, Expect=2e-19]} {RNA1509_339} {RNA1310_2} {RNA815_2}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_15776

390

8.13

Mlig455_029536, Mlig455_043042

Neo: -

Age: -

UBE4A

1.000

MligTC455_15777

553

11.52

Mlig455_043004, Mlig455_043059

Neo: Irradiation

Age: logFC(26M/2M)=-0.376

UBE4A

4.684

0.924

0.959

0.963

0.875

0.963

Mlig455_043004 {REF} {Length: 5498} {TRANSSPLICED} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=423.3]; U-box domain [PF04564.17, score=96.2]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [RH, Score=440, Expect=2e-136]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [RH, Score=445, Expect=1e-138]} {Dmel: FBgn0028467, CG11070, [Score=373, Expect=9e-113]} {Celegans: WBGene00006734, ufd-2, Probable ubiquitin conjugation factor E4, [Score=171, Expect=2e-43]} {Smed: dd_Smed_v6_4558_0_1, dd_Smed_v6_4558_0_1, [RH, Score=425, Expect=6e-132]} {RNA1509_25538} {RNA1310_4756} {RNA815_9670}

Mlig455_043059 {REF} {Length: 7893} {Pfam: Ubiquitin elongating factor core [PF10408.11, score=421.8]; U-box domain [PF04564.17, score=94.6]; Scd6-like Sm domain [PF12701.9, score=90.5]; Ataxin 2 SM domain [PF14438.8, score=32.5]} {Human: ENSG00000110344, UBE4A, ubiquitination factor E4A, [RH, Score=439, Expect=3e-132]} {Mouse: ENSMUSG00000059890, Ube4a, ubiquitination factor E4A, [RH, Score=445, Expect=1e-134]} {Dmel: FBgn0028467, CG11070, [RH, Score=371, Expect=6e-109]} {Celegans: WBGene00006734, ufd-2, Probable ubiquitin conjugation factor E4, [Score=169, Expect=2e-42]} {Smed: dd_Smed_v6_4558_0_1, dd_Smed_v6_4558_0_1, [RH, Score=424, Expect=9e-128]} {RNA1509_25538} {RNA1310_4756, RNA1509_25538} {RNA1509_25538, RNA815_9670}

MligTC455_34248

312

6.5

Mlig455_056085

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.730

Region-enriched R3: 2.759/0.03324

MALRD1

0.974

Mlig455_056085 {REF} {Length: 27083} {Pfam: MAM domain, meprin/A5/mu [PF00629.25, score=3266.0]; Low-density lipoprotein receptor domain class A [PF00057.20, score=153.1]} {Human: ENSG00000204740, MALRD1, MAM and LDL receptor class A domain containing 1, [Score=416, Expect=5e-116]} {Mouse: ENSMUSG00000075520, Malrd1, MAM and LDL receptor class A domain containing 1, [Score=388, Expect=2e-107]} {Dmel: FBgn0040505, Alk, Anaplastic lymphoma kinase, [Score=98.6, Expect=2e-19]} {RNA1509_339} {RNA1310_2} {RNA815_2}