TomoSeq data search

Data search

Results for MligTC455_16506

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_16506

268

5.58

Mlig455_067074

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.396

SERINC3

Mlig455_067074 {REF} {Length: 2761} {TRANSSPLICED} {Pfam: Serine incorporator (Serinc) [PF03348.17, score=489.4]} {Human: ENSG00000132824, SERINC3, serine incorporator 3, [RH, Score=400, Expect=9e-136]} {Mouse: ENSMUSG00000017707, Serinc3, serine incorporator 3, [RH, Score=353, Expect=1e-117]} {Dmel: FBgn0028399, TMS1, [Score=319, Expect=2e-104]} {Celegans: WBGene00021956, Y57E12AL.1, [Score=346, Expect=3e-115]} {Smed: dd_Smed_v6_1130_0_1, dd_Smed_v6_1130_0_1, [Score=460, Expect=1e-159]} {RNA1509_12228} {RNA1310_17866, RNA1509_12228} {RNA1509_12228, RNA815_3387.1}

Cumulative graph for MligTC455_16506

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.779	2.914	0.62393	1.00000
RegionR2	0.912	2.914	0.16452	0.50792
RegionR3	-0.54	2.914	0.37454	0.90834
RegionR4	0.825	2.914	0.17242	0.43712
RegionR5	0.494	2.914	0.32739	0.67147
RegionR6	0.745	2.914	0.17953	0.74296
RegionR7	-1.517	2.914	0.11058	0.63089
RegionR8	-0.14	2.914	0.88054	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.493	2.914	0.30513	0.99924
RegenerationR2	0.341	2.914	0.49968	0.87158
RegenerationR3	0.988	2.914	0.12452	0.54522
RegenerationR4	-1.009	2.914	0.10902	0.50777
RegenerationR5	0.09	2.914	0.86851	1.00000
RegenerationR6	-1.107	2.914	0.09594	0.38502
RegenerationBL	-0.586	2.914	0.54679	0.90399
RegenerationTP	2.008	2.914	0.01118	0.17930

Genes with expression patterns similar to MligTC455_16506

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_16506	268	5.58	Mlig455_067074	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.396	SERINC3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_067074 {REF} {Length: 2761} {TRANSSPLICED} {Pfam: Serine incorporator (Serinc) [PF03348.17, score=489.4]} {Human: ENSG00000132824, SERINC3, serine incorporator 3, [RH, Score=400, Expect=9e-136]} {Mouse: ENSMUSG00000017707, Serinc3, serine incorporator 3, [RH, Score=353, Expect=1e-117]} {Dmel: FBgn0028399, TMS1, [Score=319, Expect=2e-104]} {Celegans: WBGene00021956, Y57E12AL.1, [Score=346, Expect=3e-115]} {Smed: dd_Smed_v6_1130_0_1, dd_Smed_v6_1130_0_1, [Score=460, Expect=1e-159]} {RNA1509_12228} {RNA1310_17866, RNA1509_12228} {RNA1509_12228, RNA815_3387.1}
2.	MligTC455_38575	1171	24.39	Mlig455_063431	Neo: - Age: -	FBXL20	2.521	-	0.723	0.821	-	-	0.977	Mlig455_063431 {REF} {Length: 4893} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=90.2]; Leucine Rich repeats (2 copies) [PF12799.9, score=60.1]; F-box-like [PF12937.9, score=51.6]; F-box/LRR-repeat protein 18 C-terminal [PF19729.1, score=42.2]; F-box domain [PF00646.35, score=37.7]; Leucine Rich Repeat [PF00560.35, score=33.2]; Leucine rich repeat [PF13855.8, score=24.7]} {Human: ENSG00000108306, FBXL20, F-box and leucine rich repeat protein 20, [RH, Score=410, Expect=3e-140]} {Mouse: ENSMUSG00000020883, Fbxl20, F-box and leucine-rich repeat protein 20, [RH, Score=407, Expect=2e-139]} {Dmel: FBgn0033639, CG9003, [RH, Score=426, Expect=5e-144]} {Celegans: WBGene00015350, fbxl-1, Uncharacterized F-box/LRR-repeat protein C02F5.7, [RH, Score=369, Expect=2e-124]} {Smed: dd_Smed_v6_6761_0_1, dd_Smed_v6_6761_0_1, [RH, Score=360, Expect=2e-120]} {RNA1509_19431} {RNA1310_17051} {RNA815_7837}
3.	MligTC455_02742	103	2.15	Mlig455_020694, Mlig455_020762	Neo: - Age: Down-Up-Down		1.776	-	-	0.951	0.825	-	-	Mlig455_020694 {REF} {Length: 1197} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=30.0]; Prokaryotic RING finger family 4 [PF14447.8, score=21.1]} {RNA1310_61039} Mlig455_020762 {REF} {Length: 1489} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=30.0]; Prokaryotic RING finger family 4 [PF14447.8, score=21.1]} {RNA1509_2215} {RNA1310_61039} {RNA815_6756.1}
4.	MligTC455_41424	181	3.77	Mlig455_018196	Neo: - Age: -	BBS4	1.691	-	-	0.950	-	-	0.741	Mlig455_018196 {REF} {Length: 2934} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF07719.19, score=132.0]; Tetratricopeptide repeat [PF00515.30, score=117.7]; Tetratricopeptide repeat [PF13181.8, score=99.9]; TPR repeat [PF13414.8, score=73.7]; Tetratricopeptide repeat [PF14559.8, score=56.0]; Tetratricopeptide repeat [PF13432.8, score=55.0]; Tetratricopeptide repeat [PF13371.8, score=54.8]; Tetratricopeptide repeat [PF13428.8, score=50.2]; Tetratricopeptide repeat [PF13424.8, score=50.0]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=49.8]; Tetratricopeptide repeat [PF13176.8, score=46.4]; Tetratricopeptide repeat [PF13431.8, score=40.4]; Tetratricopeptide repeat [PF13174.8, score=33.5]; Coatomer epsilon subunit [PF04733.16, score=22.6]; Bacterial type III secretion protein (HrpB1_HrpK) [PF09613.12, score=18.8]} {Human: ENSG00000140463, BBS4, Bardet-Biedl syndrome 4, [RH, Score=496, Expect=6e-171]} {Mouse: ENSMUSG00000025235, Bbs4, Bardet-Biedl syndrome 4 (human), [RH, Score=492, Expect=1e-169]} {Dmel: FBgn0033578, BBS4, Bardet-Biedl syndrome 4, [RH, Score=252, Expect=5e-77]} {Celegans: WBGene00043992, bbs-4, Bardet-Biedl syndrome 4 protein homolog, [RH, Score=207, Expect=2e-60]} {Smed: dd_Smed_v6_11370_0_1, dd_Smed_v6_11370_0_1, [RH, Score=446, Expect=3e-152]} {RNA1509_10669, RNA1509_53697, RNA1509_59346} {RNA1310_19623.1, RNA1509_53697, RNA1509_59346} {RNA1509_53697, RNA1509_59346, RNA815_1541.1}
5.	MligTC455_48600	395	8.23	Mlig455_001133	Neo: Germline Age: Down-Up-Down	SLC35E3	0.974	-	-	0.974	-	-	-	Mlig455_001133 {REF} {Length: 1757} {TRANSSPLICED} {Pfam: Triose-phosphate Transporter family [PF03151.18, score=65.8]; EamA-like transporter family [PF00892.22, score=31.7]; UAA transporter family [PF08449.13, score=23.4]} {Human: ENSG00000175782, SLC35E3, solute carrier family 35 member E3, [RH, Score=293, Expect=2e-98]} {Mouse: ENSMUSG00000060181, Slc35e3, solute carrier family 35, member E3, [RH, Score=289, Expect=6e-97]} {RNA1509_18211} {RNA1310_8738.1} {RNA815_11669}
6.	MligTC455_16678	261	5.44	Mlig455_044612	Neo: - Age: -	CLEC16A	0.969	-	-	0.969	-	-	-	Mlig455_044612 {REF} {Length: 4709} {TRANSSPLICED} {Pfam: CLEC16A C-terminal [PF19439.1, score=339.5]; Uncharacterised conserved protein [PF09758.11, score=193.7]} {Human: ENSG00000038532, CLEC16A, C-type lectin domain containing 16A, [Score=641, Expect=0.0]} {Mouse: ENSMUSG00000068663, Clec16a, C-type lectin domain family 16, member A, [Score=647, Expect=0.0]} {Dmel: FBgn0038427, ema, endosomal maturation defective, [Score=620, Expect=0.0]} {Celegans: WBGene00001660, gop-1, Protein CLEC16A homolog, [RH, Score=303, Expect=5e-89]} {Smed: dd_Smed_v6_3621_0_1, dd_Smed_v6_3621_0_1, [Score=375, Expect=2e-115]} {RNA1509_38257, RNA1509_59719} {RNA1310_6097.1, RNA1509_38257, RNA1509_59719} {RNA1509_38257, RNA1509_59719, RNA815_1666}
7.	MligTC455_52748	199	4.15	Mlig455_061690	Neo: - Age: -	SNTB1	0.964	-	-	0.964	-	-	-	Mlig455_061690 {REF} {Length: 3251} {Pfam: PDZ domain [PF00595.26, score=71.2]; PH domain [PF18012.3, score=53.6]; PH domain [PF00169.31, score=39.0]; PDZ domain [PF17820.3, score=25.1]} {Human: ENSG00000172164, SNTB1, syntrophin beta 1, [RH, Score=390, Expect=5e-130]; ENSG00000168807, SNTB2, syntrophin beta 2, [RH, Score=388, Expect=2e-129]} {Mouse: ENSMUSG00000041308, Sntb2, syntrophin, basic 2, [RH, Score=389, Expect=7e-130]; ENSMUSG00000060429, Sntb1, syntrophin, basic 1, [RH, Score=380, Expect=1e-126]} {Dmel: FBgn0037130, Syn1, Syntrophin-like 1, [RH, Score=350, Expect=1e-113]} {Celegans: WBGene00006062, stn-1, Syntrophin-1, [RH, Score=210, Expect=3e-62]} {Smed: dd_Smed_v6_7105_0_1, dd_Smed_v6_7105_0_1, [Score=459, Expect=6e-158]} {RNA1509_18297} {RNA1310_10457} {RNA815_22317}

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