M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_18074

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18074 308 6.41 Mlig455_007066

Neo: -

Age: -

Region-enriched R5: 1.938/0.00132

 CROT Mlig455_007066 {REF} {Length: 2615} {TRANSSPLICED} {Pfam: Choline/Carnitine o-acyltransferase [PF00755.22, score=415.8]} {Human: ENSG00000005469, CROT, carnitine O-octanoyltransferase, [RH, Score=407, Expect=7e-134]} {Mouse: ENSMUSG00000003623, Crot, carnitine O-octanoyltransferase, [RH, Score=405, Expect=3e-133]} {Dmel: FBgn0039543, CG12428, [RH, Score=293, Expect=2e-90]} {Celegans: WBGene00011850, T20B3.1, [RH, Score=274, Expect=2e-83]} {Smed: dd_Smed_v6_11465_0_2, dd_Smed_v6_11465_0_2, [RH, Score=293, Expect=2e-90]} {RNA1509_10147} {RNA1310_8405.1, RNA1509_10147} {RNA1509_10147, RNA815_4713}

Cumulative graph for MligTC455_18074

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.103 3.183 0.08189 0.62417
RegionR2 0.954 3.183 0.24974 0.62795
RegionR3 0.871 3.183 0.14874 0.65479
RegionR4 -0.349 3.183 0.59727 0.91085
RegionR5 1.938 3.183 0.00008 0.00132
RegionR6 1.261 3.183 0.03274 0.33673
RegionR7 -0.422 3.183 0.58384 1.00000
RegionR8 -1.151 3.183 0.25844 0.87975

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.902 3.183 0.52329 1.00000
RegenerationR2 -0.341 3.183 0.59001 0.91130
RegenerationR3 0.479 3.183 0.47518 0.84702
RegenerationR4 0.957 3.183 0.16552 0.60043
RegenerationR5 0.255 3.183 0.63245 0.92323
RegenerationR6 -1.045 3.183 0.15633 0.48341
RegenerationBL 0.593 3.183 0.51036 0.87397
RegenerationTP 0.146 3.183 0.90888 1.00000


Genes with expression patterns similar to MligTC455_18074

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18074 308 6.41 Mlig455_007066

Neo: -

Age: -

Region-enriched R5: 1.938/0.00132

 CROT 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_007066 {REF} {Length: 2615} {TRANSSPLICED} {Pfam: Choline/Carnitine o-acyltransferase [PF00755.22, score=415.8]} {Human: ENSG00000005469, CROT, carnitine O-octanoyltransferase, [RH, Score=407, Expect=7e-134]} {Mouse: ENSMUSG00000003623, Crot, carnitine O-octanoyltransferase, [RH, Score=405, Expect=3e-133]} {Dmel: FBgn0039543, CG12428, [RH, Score=293, Expect=2e-90]} {Celegans: WBGene00011850, T20B3.1, [RH, Score=274, Expect=2e-83]} {Smed: dd_Smed_v6_11465_0_2, dd_Smed_v6_11465_0_2, [RH, Score=293, Expect=2e-90]} {RNA1509_10147} {RNA1310_8405.1, RNA1509_10147} {RNA1509_10147, RNA815_4713}
2. MligTC455_35622 33 0.68 Mlig455_004639

Neo: -

Age: -

 1.824 - - - - 0.950 0.874 Mlig455_004639 {REF} {Length: 1531} {NoTransDecoderORF} {RNA1509_15717} {RNA1310_20201} {RNA815_28756}
3. MligTC455_48847 775 16.14 Mlig455_039871

Neo: Irradiation

Age: -

 CXXC1 1.795 - - - - 0.838 0.957 Mlig455_039871 {REF} {Length: 1612} {TRANSSPLICED} {Pfam: CpG binding protein C-terminal domain [PF12269.10, score=195.7]; PHD-finger [PF00628.31, score=43.5]; PHD-finger [PF13831.8, score=19.9]} {Human: ENSG00000154832, CXXC1, CXXC finger protein 1, [RH, Score=213, Expect=1e-61]} {Mouse: ENSMUSG00000024560, Cxxc1, CXXC finger 1 (PHD domain), [RH, Score=215, Expect=2e-62]} {Dmel: FBgn0030121, Cfp1, CXXC finger protein 1, [RH, Score=197, Expect=5e-56]} {Celegans: WBGene00006384, taf-3, TAF (TBP-associated transcription factor) family, [Score=54.7, Expect=1e-07]} {Smed: dd_Smed_v6_15324_0_3, dd_Smed_v6_15324_0_3, [RH, Score=129, Expect=1e-35]} {RNA1509_23778, RNA1509_24194, RNA1509_42462} {RNA1310_19043, RNA1509_23778, RNA1509_24194, RNA1509_42462} {RNA1509_23778, RNA1509_24194, RNA1509_42462, RNA815_39759}
4. MligTC455_40702 209 4.36 Mlig455_030731

Neo: -

Age: -

Region-enriched R5: 2.434/0.02879

 1.7 - - - - 0.749 0.951 Mlig455_030731 {REF} {Length: 2863} {TRANSSPLICED} {Pfam: Leucine Rich Repeat [PF00560.35, score=25.4]} {RNA1509_28290, RNA1509_34243} {RNA1310_14147, RNA1509_34243} {RNA1509_34243, RNA815_4034.1}
5. MligTC455_42306 864 18 Mlig455_020699, Mlig455_020767

Neo: -

Age: -

 1.686 - 0.724 - - - 0.962

Mlig455_020699 {REF} {Length: 1825} {TRANSSPLICED} {RNA1509_29217, RNA1509_45221, RNA1509_49303} {RNA1310_16148.1, RNA1509_29217, RNA1509_45221, RNA1509_49303} {RNA1509_29217, RNA1509_45221, RNA1509_49303, RNA815_19582}

Mlig455_020767 {REF} {Length: 1819} {TRANSSPLICED} {RNA1509_45221} {RNA1310_16148.1} {RNA815_19582}
6. MligTC455_51717 52 1.08 Mlig455_001880

Neo: -

Age: Down-Up-Up

 0.982 - - - - 0.982 - Mlig455_001880 {REF} {Length: 1251} {TRANSSPLICED} {RNA1310_62660} {RNA815_37836}
7. MligTC455_51609 26 0.55 Mlig455_059418

Neo: -

Age: -

 FAAH 0.973 - - - - 0.973 - Mlig455_059418 {REF} {Length: 2674} {Pfam: Amidase [PF01425.23, score=256.5]} {Human: ENSG00000117480, FAAH, fatty acid amide hydrolase, [Score=243, Expect=7e-72]} {Mouse: ENSMUSG00000034171, Faah, fatty acid amide hydrolase, [Score=252, Expect=2e-75]} {Dmel: FBgn0037547, CG7910, [Score=103, Expect=4e-23]} {Celegans: WBGene00019068, faah-3, Fatty Acid Amide Hydrolase homolog, [Score=266, Expect=3e-81]} {Smed: dd_Smed_v6_3298_0_1, dd_Smed_v6_3298_0_1, [Score=358, Expect=3e-116]} {RNA1310_26916} {RNA815_54676}
8. MligTC455_46264 7 0.15 Mlig455_069600

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_069600 {REF} {Length: 1388} {NoTransDecoderORF} {RNA1509_8113} {RNA1310_26749}
9. MligTC455_10122 57 1.19 Mlig455_038355

Neo: -

Age: -

 SIK3 0.97 - - - - 0.970 - Mlig455_038355 {REF} {Length: 5615} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=228.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=119.7]; Kinase-like [PF14531.8, score=27.2]; Phosphotransferase enzyme family [PF01636.25, score=19.0]} {Human: ENSG00000160584, SIK3, SIK family kinase 3, [Score=324, Expect=1e-94]; ENSG00000170145, SIK2, salt inducible kinase 2, [Score=320, Expect=1e-95]; ENSG00000075413, MARK3, microtubule affinity regulating kinase 3, [Score=311, Expect=4e-94]} {Mouse: ENSMUSG00000034135, Sik3, SIK family kinase 3, [Score=325, Expect=3e-95]; ENSMUSG00000037112, Sik2, salt inducible kinase 2, [Score=323, Expect=1e-96]; ENSMUSG00000024042, Sik1, salt inducible kinase 1, [Score=311, Expect=7e-94]} {Dmel: FBgn0025625, Sik2, Salt-inducible kinase 2, [Score=326, Expect=2e-95]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [Score=293, Expect=2e-85]} {Smed: dd_Smed_v6_8348_0_2, dd_Smed_v6_8348_0_2, [RH, Score=376, Expect=1e-113]} {RNA1509_14551} {RNA1310_21972.1} {RNA815_29595}
10. MligTC455_01867 37 0.77 Mlig455_007032, Mlig455_069134

Neo: -

Age: -

Region-enriched R4: 4.976/0.00767

 0.969 - - - - 0.969 -

Mlig455_007032 {REF} {Length: 164} {NoTransDecoderORF}

Mlig455_069134 {REF} {Length: 352} {NoTransDecoderORF}
11. MligTC455_31787 8 0.17 Mlig455_052630

Neo: -

Age: -

 TRIM3 0.968 - - - - 0.968 - Mlig455_052630 {REF} {Length: 2227} {Pfam: NHL repeat [PF01436.23, score=30.0]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=59.3, Expect=6e-09]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=59.3, Expect=4e-09]} {RNA1509_15622} {RNA1310_14145.1} {RNA815_3900.1}
12. MligTC455_25276 124 2.59 Mlig455_024081

Neo: -

Age: -

Region-enriched R4: 3.721/0.04372
Region-enriched R5: 3.389/0.00359

 0.967 - - - - 0.967 - Mlig455_024081 {REF} {Length: 1384} {TRANSSPLICED} {Pfam: Complex 1 protein (LYR family) [PF05347.17, score=47.3]; Complex1_LYR-like [PF13233.8, score=20.4]} {RNA1509_37248} {RNA1310_65243} {RNA815_33572}
13. MligTC455_29342 150 3.13 Mlig455_025176, Mlig455_025188

Neo: -

Age: Up-Down-Up

Region-enriched R2: 4.014/0.03070

 0.963 - - - - 0.963 -

Mlig455_025176 {REF} {Length: 2991} {RNA1509_18735} {RNA1310_76847} {RNA815_13499.1}

Mlig455_025188 {REF} {Length: 2991} {RNA1509_18735} {RNA1310_76847} {RNA815_13499.1}
14. MligTC455_32283 8 0.16 Mlig455_036099

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_036099 {REF} {Length: 575} {Pfam: Transcription factor IIA, alpha/beta subunit [PF03153.15, score=20.3]} {RNA1310_12760} {RNA815_50138}
15. MligTC455_56702 4 0.09 Mlig455_026927

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_026927 {REF} {Length: 1990} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=32.7]} {Smed: dd_Smed_v6_20444_0_1, dd_Smed_v6_20444_0_1, [Score=78.2, Expect=9e-16]}
16. MligTC455_15839 8 0.16 Mlig455_046211

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_046211 {REF} {Length: 936} {NoTransDecoderORF}
17. MligTC455_38463 19 0.39 Mlig455_057313

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_057313 {REF} {Length: 937} {NoTransDecoderORF} {RNA1509_25022} {RNA1310_113003} {RNA815_23623}
18. MligTC455_01821 27 0.56 Mlig455_052616, Mlig455_052660

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_052616 {REF} {Length: 743} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_32930.1} {RNA815_64157}

Mlig455_052660 {REF} {Length: 698} {TRANSSPLICED} {RNA1310_32930.1} {RNA815_64157}
19. MligTC455_22208 15 0.31 Mlig455_014994

Neo: -

Age: Down-Up-Down

 ASIC1 0.961 - - - - 0.961 - Mlig455_014994 {REF} {Length: 2832} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=172.7]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=53.9, Expect=8e-07]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=53.1, Expect=9e-07]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=67.4, Expect=2e-11]} {Smed: dd_Smed_v6_16346_0_1, dd_Smed_v6_16346_0_1, [Score=112, Expect=1e-25]} {RNA1509_26567} {RNA1310_9266.1} {RNA815_6618}
20. MligTC455_28956 70 1.47 Mlig455_019522

Neo: -

Age: Up-Down-Down

 0.961 - - - - 0.961 - Mlig455_019522 {REF} {Length: 7605} {Pfam: Zinc knuckle [PF00098.25, score=30.0]; Eukaryotic translation initiation factor 3 subunit G [PF12353.10, score=20.0]} {Smed: dd_Smed_v6_10279_0_1, dd_Smed_v6_10279_0_1, [Score=48.9, Expect=6e-07]} {RNA1509_2552} {RNA1310_55.1} {RNA815_1085}
21. MligTC455_17658 8 0.17 Mlig455_070903

Neo: -

Age: -

 PRSS8 0.96 - - - - 0.960 - Mlig455_070903 {REF} {Length: 3042} {Pfam: Trypsin [PF00089.28, score=191.2]; Domain of unknown function (DUF1986) [PF09342.13, score=27.2]} {Human: ENSG00000052344, PRSS8, serine protease 8, [Score=157, Expect=2e-44]; ENSG00000088926, F11, coagulation factor XI, [Score=156, Expect=2e-42]; ENSG00000237412, PRSS56, serine protease 56, [Score=153, Expect=5e-41]; ENSG00000122194, PLG, plasminogen, [Score=150, Expect=1e-39]; ENSG00000160183, TMPRSS3, transmembrane serine protease 3, [Score=150, Expect=5e-41]} {Mouse: ENSMUSG00000059481, Plg, plasminogen, [Score=160, Expect=4e-43]; ENSMUSG00000024124, Prss30, protease, serine 30, [Score=154, Expect=9e-44]; ENSMUSG00000030800, Prss8, protease, serine 8 (prostasin), [Score=153, Expect=3e-43]; ENSMUSG00000024034, Tmprss3, transmembrane protease, serine 3, [Score=152, Expect=6e-42]} {Dmel: FBgn0031619, CG3355, [RH, Score=157, Expect=4e-45]} {Celegans: WBGene00006619, try-1, TRYpsin-like protease, [Score=130, Expect=3e-35]} {Smed: dd_Smed_v6_1427_0_1, dd_Smed_v6_1427_0_1, [RH, Score=188, Expect=1e-56]} {RNA1509_32263, RNA1509_41353} {RNA1310_26531.1, RNA1509_32263, RNA1509_41353} {RNA1509_32263, RNA1509_41353, RNA815_14174}
22. MligTC455_00805 9 0.18 Mlig455_050616

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_050616 {REF} {Length: 340} {NoTransDecoderORF} {RNA1310_103921} {RNA815_53976}
23. MligTC455_07266 2 0.04 Mlig455_038909

Neo: -

Age: -

 CHRM2 0.959 - - - - 0.959 - Mlig455_038909 {REF} {Length: 1610} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=96.9]} {Human: ENSG00000181072, CHRM2, cholinergic receptor muscarinic 2, [Score=82.0, Expect=6e-16]} {Mouse: ENSMUSG00000045613, Chrm2, cholinergic receptor, muscarinic 2, cardiac, [Score=79.7, Expect=2e-15]} {Dmel: FBgn0037546, mAChR-B, muscarinic Acetylcholine Receptor, B-type, [Score=69.7, Expect=4e-12]} {Celegans: WBGene00001518, gar-2, Probable muscarinic acetylcholine receptor gar-2, [Score=53.1, Expect=3e-07]} {Smed: dd_Smed_v6_28214_0_1, dd_Smed_v6_28214_0_1, [Score=74.3, Expect=5e-14]} {RNA1509_26605} {RNA1310_72977} {RNA815_37371}
24. MligTC455_23211 28 0.58 Mlig455_061938

Neo: -

Age: -

Region-enriched R4: 4.330/0.02751

 0.959 - - - - 0.959 - Mlig455_061938 {REF} {Length: 2021} {RNA1509_12774} {RNA1310_9477.1} {RNA815_3474.1}
25. MligTC455_42359 50 1.05 Mlig455_006820, Mlig455_038432, Mlig455_038569

Neo: -

Age: Up-Down-Up

 0.959 - - - - 0.959 -

Mlig455_006820 {REF} {Length: 1439} {Smed: dd_Smed_v6_15433_0_1, dd_Smed_v6_15433_0_1, [Score=58.9, Expect=1e-09]} {RNA1310_86618}

Mlig455_038432 {REF} {Length: 5209} {Smed: dd_Smed_v6_15433_0_1, dd_Smed_v6_15433_0_1, [Score=68.2, Expect=3e-11]} {RNA1509_41513} {RNA1310_34666} {RNA815_60037}

Mlig455_038569 {REF} {Length: 716} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_46306}
26. MligTC455_16344 8 0.17 Mlig455_049962

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_049962 {REF} {Length: 3400} {TRANSSPLICED} {Pfam: Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=143.4]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=27.8]} {RNA1509_31227} {RNA1310_23862.1} {RNA815_8951}
27. MligTC455_20832 9 0.18 Mlig455_064272

Neo: -

Age: Up-Down-Down

 NYNRIN 0.957 - - - - 0.957 - Mlig455_064272 {REF} {Length: 3385} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=76.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=72.0]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=46.6]; Integrase core domain [PF00665.28, score=29.4]; Zinc knuckle [PF00098.25, score=25.0]; Retroviral aspartyl protease [PF00077.22, score=19.9]; Aspartyl protease [PF13650.8, score=19.4]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=62.4, Expect=5e-09]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=214, Expect=5e-57]} {RNA1509_52470} {RNA1310_7413} {RNA815_28741}
28. MligTC455_25333 820 17.08 Mlig455_043340

Neo: Int S/G2/M

Age: -

 RAB11B 0.957 - - - 0.957 - - Mlig455_043340 {REF} {Length: 1724} {Pfam: Ras family [PF00071.24, score=214.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=119.8]; ADP-ribosylation factor family [PF00025.23, score=46.7]; 50S ribosome-binding GTPase [PF01926.25, score=30.5]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.5]; RsgA GTPase [PF03193.18, score=21.3]; AAA domain [PF13401.8, score=21.1]} {Human: ENSG00000185236, RAB11B, RAB11B, member RAS oncogene family, [RH, Score=338, Expect=6e-119]; ENSG00000103769, RAB11A, RAB11A, member RAS oncogene family, [RH, Score=329, Expect=2e-115]} {Mouse: ENSMUSG00000077450, Rab11b, RAB11B, member RAS oncogene family, [RH, Score=337, Expect=8e-119]; ENSMUSG00000004771, Rab11a, RAB11A, member RAS oncogene family, [RH, Score=329, Expect=1e-115]} {Dmel: FBgn0015790, Rab11, [RH, Score=331, Expect=2e-116]} {Celegans: WBGene00004274, rab-11.1, Ras-related protein rab-11.1, [RH, Score=328, Expect=1e-115]} {Smed: dd_Smed_v6_867_0_1, dd_Smed_v6_867_0_1, [RH, Score=319, Expect=4e-112]} {RNA1509_32054, RNA1509_40682, RNA1509_47949, RNA1509_8030} {RNA1310_13732, RNA1509_40682, RNA1509_47949, RNA1509_8030} {RNA1509_40682, RNA1509_47949, RNA1509_8030, RNA815_4942.1}
29. MligTC455_26569 11 0.22 Mlig455_009322, Mlig455_022836, Mlig455_025092, Mlig455_025097, Mlig455_052914, Mlig455_054666

Neo: Germline

Age: -

 PIF1 0.957 - - - - 0.957 -

Mlig455_009322 {REF} {Length: 644} {Pfam: PIF1-like helicase [PF05970.16, score=83.4]; UvrD-like helicase C-terminal domain [PF13538.8, score=29.1]; Helicase [PF02689.16, score=18.2]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=59.3, Expect=4e-10]} {Celegans: WBGene00021577, Y46B2A.2, [Score=138, Expect=2e-37]} {Smed: dd_Smed_v6_19520_0_6, dd_Smed_v6_19520_0_6, [Score=79.7, Expect=9e-20]} {RNA1509_16163} {RNA1310_14011} {RNA815_50029}

Mlig455_022836 {REF} {Length: 5858} {Pfam: PIF1-like helicase [PF05970.16, score=333.2]; Helitron helicase-like domain at N-terminus [PF14214.8, score=174.2]; AAA domain [PF13604.8, score=47.7]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.5]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=114, Expect=4e-25]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=110, Expect=3e-24]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=116, Expect=5e-26]} {Celegans: WBGene00018020, F33H12.6, [RH, Score=740, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=110, Expect=3e-24]} {RNA1509_16163} {RNA1310_2680.1} {RNA815_356.1}

Mlig455_025092 {REF} {Length: 6768} {Pfam: PIF1-like helicase [PF05970.16, score=330.6]; Helitron helicase-like domain at N-terminus [PF14214.8, score=175.4]; AAA domain [PF13604.8, score=46.1]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.7]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=114, Expect=5e-25]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=109, Expect=9e-24]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=116, Expect=5e-26]} {Celegans: WBGene00018020, F33H12.6, [RH, Score=741, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=110, Expect=1e-24]} {RNA1509_16163} {RNA1310_2680.1, RNA1509_16163} {RNA1509_16163, RNA815_356.1}

Mlig455_025097 {REF} {Length: 4900} {Pfam: PIF1-like helicase [PF05970.16, score=330.6]; Helitron helicase-like domain at N-terminus [PF14214.8, score=175.4]; AAA domain [PF13604.8, score=46.1]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.7]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=114, Expect=5e-25]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=109, Expect=9e-24]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=116, Expect=5e-26]} {Celegans: WBGene00018020, F33H12.6, [RH, Score=741, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=110, Expect=1e-24]} {RNA1509_16163} {RNA1310_2680.1} {RNA815_356.1}

Mlig455_052914 {REF} {Length: 5871} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=175.0]} {Celegans: WBGene00019136, F59H6.5, [Score=521, Expect=3e-162]} {Smed: dd_Smed_v6_91935_0_1, dd_Smed_v6_91935_0_1, [Score=69.7, Expect=8e-14]} {RNA1509_16163} {RNA1310_2680.1} {RNA815_356.1}

Mlig455_054666 {REF} {Length: 5148} {Pfam: PIF1-like helicase [PF05970.16, score=333.4]; Helitron helicase-like domain at N-terminus [PF14214.8, score=174.4]; AAA domain [PF13604.8, score=47.9]; UvrD-like helicase C-terminal domain [PF13538.8, score=19.1]; AAA domain [PF13245.8, score=18.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=114, Expect=6e-25]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=109, Expect=9e-24]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=114, Expect=2e-25]} {Celegans: WBGene00018020, F33H12.6, [Score=722, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=108, Expect=7e-24]} {RNA1509_16163} {RNA1310_2680.1} {RNA815_356.1}
30. MligTC455_42291 32 0.67 Mlig455_048550

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_048550 {REF} {Length: 2571} {NoTransDecoderORF} {RNA1509_47422} {RNA1310_16235.1} {RNA815_16690}
31. MligTC455_10123 149 3.1 Mlig455_038373

Neo: -

Age: -

 SIK3 0.956 - - - - 0.956 - Mlig455_038373 {REF} {Length: 5401} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=229.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=121.0]; Kinase-like [PF14531.8, score=27.2]; Phosphotransferase enzyme family [PF01636.25, score=18.9]} {Human: ENSG00000160584, SIK3, SIK family kinase 3, [Score=327, Expect=1e-95]; ENSG00000170145, SIK2, salt inducible kinase 2, [Score=318, Expect=8e-95]} {Mouse: ENSMUSG00000034135, Sik3, SIK family kinase 3, [Score=328, Expect=3e-96]; ENSMUSG00000037112, Sik2, salt inducible kinase 2, [Score=320, Expect=1e-95]} {Dmel: FBgn0025625, Sik2, Salt-inducible kinase 2, [Score=323, Expect=2e-94]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [Score=290, Expect=2e-84]} {Smed: dd_Smed_v6_8348_0_2, dd_Smed_v6_8348_0_2, [RH, Score=373, Expect=1e-112]} {RNA1509_14551, RNA1509_56378} {RNA1310_21972.1, RNA1509_14551, RNA1509_56378} {RNA1509_14551, RNA1509_56378, RNA815_29595}
32. MligTC455_28957 208 4.33 Mlig455_020247, Mlig455_071156

Neo: Irradiation

Age: logFC(26M/2M)=0.933

 DNAJB4, RTL1 0.956 - - - - 0.956 -

Mlig455_020247 {REF} {Length: 8180} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=109.6]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.3]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=99.1]; Integrase zinc binding domain [PF17921.3, score=56.5]; Integrase core domain [PF00665.28, score=43.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=112, Expect=3e-24]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [RH, Score=498, Expect=5e-157]} {RNA1509_2552} {RNA1310_55.1} {RNA815_1085}

Mlig455_071156 {REF} {Length: 8209} {Pfam: DnaJ domain [PF00226.33, score=56.6]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=46.4]} {Human: ENSG00000162616, DNAJB4, DnaJ heat shock protein family (Hsp40) member B4, [Score=57.0, Expect=3e-09]} {Mouse: ENSMUSG00000028035, Dnajb4, DnaJ heat shock protein family (Hsp40) member B4, [Score=57.0, Expect=8e-09]; ENSMUSG00000047108, Dnajb7, DnaJ heat shock protein family (Hsp40) member B7, [Score=57.0, Expect=9e-09]; ENSMUSG00000029131, Dnajb6, DnaJ heat shock protein family (Hsp40) member B6, [Score=56.6, Expect=9e-09]; ENSMUSG00000024963, Dnajc4, DnaJ heat shock protein family (Hsp40) member C4, [Score=54.7, Expect=3e-08]} {Dmel: FBgn0035852, CG7387, [Score=55.5, Expect=3e-08]} {Celegans: WBGene00001026, dnj-8, DNaJ domain (Prokaryotic heat shock protein), [Score=58.2, Expect=4e-09]} {Smed: dd_Smed_v6_12392_0_1, dd_Smed_v6_12392_0_1, [Score=56.6, Expect=1e-09]} {RNA1509_15195, RNA1509_18735, RNA1509_2552, RNA1509_37766} {RNA1310_55.1, RNA1509_15195, RNA1509_18735, RNA1509_2552, RNA1509_37766} {RNA1509_15195, RNA1509_18735, RNA1509_2552, RNA1509_37766, RNA815_1085}
33. MligTC455_42293 28 0.59 Mlig455_053679

Neo: -

Age: -

 PIP5K1A 0.956 - - - - 0.956 - Mlig455_053679 {REF} {Length: 4383} {TRANSSPLICED} {Pfam: Phosphatidylinositol-4-phosphate 5-Kinase [PF01504.20, score=268.6]} {Human: ENSG00000143398, PIP5K1A, phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, [RH, Score=416, Expect=1e-140]} {Mouse: ENSMUSG00000034902, Pip5k1c, phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma, [RH, Score=409, Expect=2e-136]; ENSMUSG00000024867, Pip5k1b, phosphatidylinositol-4-phosphate 5-kinase, type 1 beta, [RH, Score=404, Expect=7e-136]} {Dmel: FBgn0016984, sktl, skittles, [Score=434, Expect=2e-144]} {Celegans: WBGene00004087, ppk-1, PIP Kinase, [Score=409, Expect=6e-137]} {Smed: dd_Smed_v6_7632_0_3, dd_Smed_v6_7632_0_3, [Score=419, Expect=4e-142]} {RNA1509_47422} {RNA1310_16235.2, RNA1509_47422} {RNA1509_47422, RNA815_4999.1}
34. MligTC455_54650 3 0.05 Mlig455_052728

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_052728 {REF} {Length: 376} {Pfam: Procyclic acidic repetitive protein (PARP) [PF05887.13, score=28.2]}
35. MligTC455_20171 5 0.11 Mlig455_025085

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_025085 {REF} {Length: 908}
36. MligTC455_06640 4 0.09 Mlig455_028790

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_028790 {REF} {Length: 1205} {NoTransDecoderORF} {RNA1310_93347} {RNA815_23469.1}
37. MligTC455_29866 70 1.46 Mlig455_008787, Mlig455_068946

Neo: Irradiation

Age: Up-Down-Down

 MSH6 0.953 - - - - 0.953 -

Mlig455_008787 {REF} {Length: 10819} {TRANSSPLICED} {Pfam: MutS domain I [PF01624.22, score=121.8]; MutS domain III [PF05192.20, score=79.3]; PWWP domain [PF00855.19, score=51.3]; MutS domain II [PF05188.19, score=27.8]} {Human: ENSG00000116062, MSH6, mutS homolog 6, [Score=544, Expect=2e-177]} {Mouse: ENSMUSG00000005370, Msh6, mutS homolog 6, [Score=563, Expect=0.0]} {Dmel: FBgn0036486, Msh6, [Score=417, Expect=2e-128]} {Celegans: WBGene00003422, msh-6, MSH (MutS Homolog) family, [Score=409, Expect=2e-125]} {Smed: dd_Smed_v6_15463_0_2, dd_Smed_v6_15463_0_2, [Score=466, Expect=8e-150]} {RNA1509_2552, RNA1509_40096} {RNA1310_55.1, RNA1509_40096} {RNA1509_40096, RNA815_1085}

Mlig455_068946 {REF} {Length: 697} {Pfam: Integrase core domain [PF00665.28, score=38.6]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=126, Expect=2e-34]} {RNA1509_2552} {RNA1310_55.1} {RNA815_1085}
38. MligTC455_38887 4 0.07 Mlig455_026711

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_026711 {REF} {Length: 3396} {TRANSSPLICED} {Pfam: AIG1 family [PF04548.18, score=33.3]; Type II/IV secretion system protein [PF00437.22, score=24.4]; 50S ribosome-binding GTPase [PF01926.25, score=24.0]; AAA domain [PF13476.8, score=23.2]; Septin [PF00735.20, score=22.4]; FtsK/SpoIIIE family [PF01580.20, score=22.2]; ABC transporter [PF00005.29, score=22.1]; P-loop containing region of AAA domain [PF13555.8, score=20.1]; AAA domain [PF13401.8, score=18.9]} {Celegans: WBGene00015956, C18B2.5, [Score=66.2, Expect=5e-11]} {RNA1509_21324} {RNA1310_2983} {RNA815_977}
39. MligTC455_08729 14 0.28 Mlig455_027601

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_027601 {REF} {Length: 724} {NoTransDecoderORF} {RNA1310_117665}
40. MligTC455_21582 28 0.58 Mlig455_048795

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_048795 {REF} {Length: 582} {NoTransDecoderORF}
41. MligTC455_46154 1268 26.43 Mlig455_037558, Mlig455_057319

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.248/0.00494

 MSH2 0.952 - - - - - 0.952

Mlig455_037558 {REF} {Length: 3167} {TRANSSPLICED} {Pfam: MutS domain V [PF00488.23, score=246.6]; MutS domain III [PF05192.20, score=113.4]; MutS family domain IV [PF05190.20, score=57.1]; MutS domain II [PF05188.19, score=21.6]} {Human: ENSG00000095002, MSH2, mutS homolog 2, [RH, Score=624, Expect=0.0]} {Mouse: ENSMUSG00000024151, Msh2, mutS homolog 2, [RH, Score=610, Expect=0.0]} {Dmel: FBgn0015546, spel1, spellchecker1, [RH, Score=542, Expect=1e-179]} {Celegans: WBGene00003418, msh-2, MSH (MutS Homolog) family, [RH, Score=397, Expect=6e-125]} {Smed: dd_Smed_v6_11434_0_1, dd_Smed_v6_11434_0_1, [RH, Score=513, Expect=4e-169]} {RNA1509_7318} {RNA1310_4696.1} {RNA815_1447}

Mlig455_057319 {REF} {Length: 3167} {TRANSSPLICED} {Pfam: MutS domain V [PF00488.23, score=246.6]; MutS domain III [PF05192.20, score=113.1]; MutS family domain IV [PF05190.20, score=57.1]; MutS domain II [PF05188.19, score=21.6]} {Human: ENSG00000095002, MSH2, mutS homolog 2, [RH, Score=623, Expect=0.0]} {Mouse: ENSMUSG00000024151, Msh2, mutS homolog 2, [RH, Score=608, Expect=0.0]} {Dmel: FBgn0015546, spel1, spellchecker1, [RH, Score=544, Expect=2e-180]} {Celegans: WBGene00003418, msh-2, MSH (MutS Homolog) family, [RH, Score=399, Expect=1e-125]} {Smed: dd_Smed_v6_11434_0_1, dd_Smed_v6_11434_0_1, [RH, Score=514, Expect=2e-169]} {RNA1509_7318} {RNA1310_4696.1, RNA1509_7318} {RNA1509_7318, RNA815_1447}
42. MligTC455_09661 16 0.32 Mlig455_069854

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_069854 {REF} {Length: 2803} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=54.1]; Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=36.5]; Endonuclease-reverse transcriptase [PF14529.8, score=31.2]; PHD-finger [PF00628.31, score=19.8]} {RNA1310_54800}
43. MligTC455_26439 277 5.77 Mlig455_013597

Neo: Irradiation

Age: Down-Up-Down

 0.95 - - - - - 0.950 Mlig455_013597 {REF} {Length: 2976} {RNA1509_11549, RNA1509_27111} {RNA1310_13005, RNA1509_11549, RNA1509_27111} {RNA1509_11549, RNA1509_27111, RNA815_9058}
44. MligTC455_30694 3 0.06 Mlig455_042172

Neo: -

Age: -

 VIRMA 0.95 - - - - 0.950 - Mlig455_042172 {REF} {Length: 9345} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=121.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=119.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=72.1]; Integrase zinc binding domain [PF17921.3, score=65.5]; Virilizer, N-terminal [PF15912.7, score=64.6]; Integrase core domain [PF00665.28, score=49.3]; gag-polyprotein putative aspartyl protease [PF13975.8, score=27.3]; Aspartyl protease [PF13650.8, score=25.4]} {Human: ENSG00000164944, VIRMA, vir like m6A methyltransferase associated, [Score=139, Expect=6e-32]} {Mouse: ENSMUSG00000040720, Virma, vir like m6A methyltransferase associated, [Score=144, Expect=2e-33]} {Dmel: FBgn0003977, vir, virilizer, [RH, Score=90.1, Expect=3e-17]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=441, Expect=3e-131]} {RNA1509_2811, RNA1509_55457} {RNA1310_704.2, RNA1509_55457} {RNA1509_55457, RNA815_993.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA