M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_18959

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_18959 774 16.12 Mlig455_042418

Neo: Int S/G2/M

Age: -

 GEMIN2 Mlig455_042418 {REF} {Length: 1155} {TRANSSPLICED} {Pfam: Survival motor neuron (SMN) interacting protein 1 (SIP1) [PF04938.14, score=147.1]} {Human: ENSG00000092208, GEMIN2, gem nuclear organelle associated protein 2, [RH, Score=92.0, Expect=7e-21]} {Mouse: ENSMUSG00000060121, Gemin2, gem nuclear organelle associated protein 2, [RH, Score=105, Expect=4e-26]} {Celegans: WBGene00004886, smi-1, SMN (Survival of motor neuron) protein Interactor, [Score=62.0, Expect=6e-11]} {Smed: dd_Smed_v6_11175_0_4, dd_Smed_v6_11175_0_4, [Score=51.2, Expect=2e-07]} {RNA1509_43080} {RNA1310_28644} {RNA815_45784}

Cumulative graph for MligTC455_18959

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.257 4.304 0.80066 1.00000
RegionR2 -0.783 4.304 0.14410 0.47276
RegionR3 -0.528 4.304 0.24066 0.78185
RegionR4 0.974 4.304 0.05207 0.19818
RegionR5 0.854 4.304 0.02657 0.11873
RegionR6 -0.215 4.304 0.62580 1.00000
RegionR7 -0.21 4.304 0.69572 1.00000
RegionR8 -0.349 4.304 0.60282 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.264 4.304 0.83165 1.00000
RegenerationR2 -0.185 4.304 0.71271 0.96071
RegenerationR3 0.156 4.304 0.76991 0.97156
RegenerationR4 -0.198 4.304 0.70660 0.95568
RegenerationR5 -0.509 4.304 0.29174 0.71936
RegenerationR6 0.433 4.304 0.41094 0.74460
RegenerationBL 0.094 4.304 0.87435 1.00000
RegenerationTP -0.351 4.304 0.58567 0.95313


Genes with expression patterns similar to MligTC455_18959

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_18959 774 16.12 Mlig455_042418

Neo: Int S/G2/M

Age: -

 GEMIN2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_042418 {REF} {Length: 1155} {TRANSSPLICED} {Pfam: Survival motor neuron (SMN) interacting protein 1 (SIP1) [PF04938.14, score=147.1]} {Human: ENSG00000092208, GEMIN2, gem nuclear organelle associated protein 2, [RH, Score=92.0, Expect=7e-21]} {Mouse: ENSMUSG00000060121, Gemin2, gem nuclear organelle associated protein 2, [RH, Score=105, Expect=4e-26]} {Celegans: WBGene00004886, smi-1, SMN (Survival of motor neuron) protein Interactor, [Score=62.0, Expect=6e-11]} {Smed: dd_Smed_v6_11175_0_4, dd_Smed_v6_11175_0_4, [Score=51.2, Expect=2e-07]} {RNA1509_43080} {RNA1310_28644} {RNA815_45784}
2. MligTC455_20913 14492 301.92 Mlig455_002399, Mlig455_054651

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.203

 RPS12 1.777 - - - 0.825 - 0.952

Mlig455_002399 {REF} {Length: 786} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=96.7]} {Human: ENSG00000112306, RPS12, ribosomal protein S12, [Score=160, Expect=3e-51]} {Mouse: ENSMUSG00000061983, Rps12, ribosomal protein S12, [Score=160, Expect=2e-51]; ENSMUSG00000067038, Rps12-ps3, ribosomal protein S12, pseudogene 3, [Score=160, Expect=2e-51]} {Dmel: FBgn0260441, RpS12, Ribosomal protein S12, [Score=142, Expect=2e-44]} {Celegans: WBGene00004481, rps-12, 40S ribosomal protein S12, [Score=120, Expect=5e-36]} {Smed: dd_Smed_v6_94979_0_1, dd_Smed_v6_94979_0_1, [Score=153, Expect=3e-49]} {RNA1509_1190} {RNA1310_46273, RNA1509_1190} {RNA1509_1190, RNA815_22452.1}

Mlig455_054651 {REF} {Length: 758} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=96.7]} {Human: ENSG00000112306, RPS12, ribosomal protein S12, [Score=160, Expect=3e-51]} {Mouse: ENSMUSG00000067038, Rps12-ps3, ribosomal protein S12, pseudogene 3, [Score=160, Expect=2e-51]; ENSMUSG00000061983, Rps12, ribosomal protein S12, [Score=160, Expect=2e-51]} {Dmel: FBgn0260441, RpS12, Ribosomal protein S12, [Score=142, Expect=2e-44]} {Celegans: WBGene00004481, rps-12, 40S ribosomal protein S12, [Score=121, Expect=3e-36]} {Smed: dd_Smed_v6_94979_0_1, dd_Smed_v6_94979_0_1, [Score=153, Expect=3e-49]} {RNA1509_44047, RNA1509_4432} {RNA1310_49080, RNA1509_44047, RNA1509_4432} {RNA1509_44047, RNA1509_4432, RNA815_22452.2}
3. MligTC455_50470 488 10.16 Mlig455_020809

Neo: Int S/G2/M

Age: -

 POLR2C 1.744 0.794 - - 0.950 - - Mlig455_020809 {REF} {Length: 2338} {TRANSSPLICED} {Pfam: RNA polymerase Rpb3/RpoA insert domain [PF01000.28, score=121.0]; RNA polymerase Rpb3/Rpb11 dimerisation domain [PF01193.26, score=67.5]} {Human: ENSG00000102978, POLR2C, RNA polymerase II subunit C, [RH, Score=374, Expect=5e-131]} {Mouse: ENSMUSG00000031783, Polr2c, polymerase (RNA) II (DNA directed) polypeptide C, [RH, Score=376, Expect=4e-132]} {Dmel: FBgn0026373, RpII33, RNA polymerase II 33kD subunit, [RH, Score=355, Expect=5e-124]} {Celegans: WBGene00007971, rpb-3, RNA Polymerase II (B) subunit, [RH, Score=315, Expect=3e-108]} {Smed: dd_Smed_v6_4346_0_1, dd_Smed_v6_4346_0_1, [RH, Score=318, Expect=1e-109]} {RNA1509_11618, RNA1509_23767} {RNA1310_31465, RNA1509_11618, RNA1509_23767} {RNA1509_11618, RNA1509_23767, RNA815_15387}
4. MligTC455_11264 2630 54.79 Mlig455_007585

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.309

 EIF2A 1.687 - - - 0.950 - 0.737 Mlig455_007585 {REF} {Length: 1687} {Pfam: Eukaryotic translation initiation factor eIF2A [PF08662.13, score=92.3]} {Human: ENSG00000144895, EIF2A, eukaryotic translation initiation factor 2A, [Score=186, Expect=4e-52]} {Mouse: ENSMUSG00000027810, Eif2a, eukaryotic translation initiation factor 2A, [Score=186, Expect=6e-52]} {Dmel: FBgn0037135, CG7414, [Score=146, Expect=1e-37]} {Celegans: WBGene00008480, eif-2A, Eukaryotic translation initiation factor 2A, [Score=128, Expect=1e-31]} {Smed: dd_Smed_v6_3705_0_1, dd_Smed_v6_3705_0_1, [Score=79.3, Expect=9e-16]} {RNA1509_12274} {RNA1310_9127.2} {RNA815_2839.1}
5. MligTC455_37015 1773 36.94 Mlig455_010987

Neo: -

Age: -

 DPP7 1.674 - - - 0.721 0.953 - Mlig455_010987 {REF} {Length: 3126} {TRANSSPLICED} {Pfam: Serine carboxypeptidase S28 [PF05577.14, score=280.3]; Serine aminopeptidase, S33 [PF12146.10, score=22.8]} {Human: ENSG00000176978, DPP7, dipeptidyl peptidase 7, [RH, Score=432, Expect=3e-147]} {Mouse: ENSMUSG00000026958, Dpp7, dipeptidylpeptidase 7, [RH, Score=415, Expect=2e-140]} {Dmel: FBgn0032864, CG2493, [Score=308, Expect=2e-99]} {Celegans: WBGene00022801, pcp-5, Prolyl carboxy peptidase like protein 5, [Score=263, Expect=2e-81]} {Smed: dd_Smed_v6_1123_0_1, dd_Smed_v6_1123_0_1, [RH, Score=424, Expect=1e-144]} {RNA1509_1588, RNA1509_20468} {RNA1310_12981, RNA1509_20468} {RNA1509_20468, RNA815_4278}
6. MligTC455_11265 5352 111.51 Mlig455_020754, Mlig455_020820, Mlig455_036064

Neo: Int S/G2/M

Age: -

 EIF2A 1.671 - - - 0.951 - 0.720

Mlig455_020754 {REF} {Length: 235} {NoTransDecoderORF} {RNA1509_22711} {RNA1310_72032} {RNA815_2839.1}

Mlig455_020820 {REF} {Length: 2711} {Pfam: Eukaryotic translation initiation factor eIF2A [PF08662.13, score=202.5]} {Human: ENSG00000144895, EIF2A, eukaryotic translation initiation factor 2A, [RH, Score=407, Expect=3e-135]} {Mouse: ENSMUSG00000027810, Eif2a, eukaryotic translation initiation factor 2A, [RH, Score=423, Expect=2e-141]} {Dmel: FBgn0037135, CG7414, [RH, Score=355, Expect=1e-114]} {Celegans: WBGene00008480, eif-2A, Eukaryotic translation initiation factor 2A, [RH, Score=312, Expect=6e-99]} {Smed: dd_Smed_v6_3705_0_1, dd_Smed_v6_3705_0_1, [RH, Score=218, Expect=5e-64]} {RNA1509_1548} {RNA1310_9127.2} {RNA815_2839.1}

Mlig455_036064 {REF} {Length: 2582} {Pfam: Eukaryotic translation initiation factor eIF2A [PF08662.13, score=202.5]} {Human: ENSG00000144895, EIF2A, eukaryotic translation initiation factor 2A, [RH, Score=407, Expect=3e-135]} {Mouse: ENSMUSG00000027810, Eif2a, eukaryotic translation initiation factor 2A, [RH, Score=423, Expect=2e-141]} {Dmel: FBgn0037135, CG7414, [RH, Score=355, Expect=1e-114]} {Celegans: WBGene00008480, eif-2A, Eukaryotic translation initiation factor 2A, [RH, Score=312, Expect=6e-99]} {Smed: dd_Smed_v6_3705_0_1, dd_Smed_v6_3705_0_1, [RH, Score=218, Expect=5e-64]} {RNA1509_12274, RNA1509_1548, RNA1509_22711, RNA1509_28835} {RNA1310_9127.2, RNA1509_12274, RNA1509_1548, RNA1509_22711, RNA1509_28835} {RNA1509_12274, RNA1509_1548, RNA1509_22711, RNA1509_28835, RNA815_2839.1}
7. MligTC455_21402 986 20.54 Mlig455_004010, Mlig455_004094

Neo: -

Age: Down-Up-Up

 SLC38A10 0.968 - - - - - 0.968

Mlig455_004010 {REF} {Length: 2208} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=164.2]; Tryptophan/tyrosine permease family [PF03222.15, score=33.8]} {Human: ENSG00000157637, SLC38A10, solute carrier family 38 member 10, [Score=271, Expect=3e-78]} {Mouse: ENSMUSG00000061306, Slc38a10, solute carrier family 38, member 10, [Score=277, Expect=1e-80]} {Dmel: FBgn0050394, CG30394, [RH, Score=238, Expect=4e-68]} {Celegans: WBGene00021765, Y51F10.4, [Score=192, Expect=4e-53]} {Smed: dd_Smed_v6_11525_0_2, dd_Smed_v6_11525_0_2, [RH, Score=205, Expect=1e-59]} {RNA1509_30902} {RNA1310_4708.1} {RNA815_535.1}

Mlig455_004094 {REF} {Length: 2462} {Human: ENSG00000157637, SLC38A10, solute carrier family 38 member 10, [Score=102, Expect=3e-22]} {Mouse: ENSMUSG00000061306, Slc38a10, solute carrier family 38, member 10, [Score=118, Expect=1e-27]} {Dmel: FBgn0050394, CG30394, [Score=90.5, Expect=9e-19]} {Celegans: WBGene00021765, Y51F10.4, [Score=67.8, Expect=5e-12]} {Smed: dd_Smed_v6_11525_0_2, dd_Smed_v6_11525_0_2, [Score=82.8, Expect=6e-17]} {RNA1509_30902} {RNA1310_4708.1} {RNA815_535.1}
8. MligTC455_48056 184 3.83 Mlig455_048769

Neo: -

Age: Up-Down-Down

 0.968 - - - - - 0.968 Mlig455_048769 {REF} {Length: 7379} {TRANSSPLICED} {Pfam: PX domain [PF00787.26, score=33.3]} {RNA1509_29567, RNA1509_33291} {RNA1310_923.1, RNA1509_29567} {RNA1509_29567, RNA815_1595}
9. MligTC455_47275 412 8.59 Mlig455_027967

Neo: -

Age: -

 PYROXD1 0.954 - - - 0.954 - - Mlig455_027967 {REF} {Length: 2000} {TRANSSPLICED} {Pfam: Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=86.4]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=25.8]; Rubredoxin NAD+ reductase C-terminal domain [PF18267.3, score=21.8]; FAD dependent oxidoreductase [PF01266.26, score=19.3]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=19.2]} {Human: ENSG00000121350, PYROXD1, pyridine nucleotide-disulphide oxidoreductase domain 1, [RH, Score=250, Expect=2e-75]} {Mouse: ENSMUSG00000041671, Pyroxd1, pyridine nucleotide-disulphide oxidoreductase domain 1, [RH, Score=252, Expect=3e-76]} {Dmel: FBgn0032846, CG10721, [RH, Score=188, Expect=7e-53]} {Celegans: WBGene00007744, C26D10.3, [RH, Score=145, Expect=2e-37]} {Smed: dd_Smed_v6_7078_0_1, dd_Smed_v6_7078_0_1, [RH, Score=191, Expect=5e-54]} {RNA1509_19660, RNA1509_50319} {RNA1310_14472, RNA1509_50319} {RNA1509_50319, RNA815_8119}
10. MligTC455_47884 446 9.28 Mlig455_070380

Neo: -

Age: -

Region-enriched R4: 1.770/0.00954
Region-enriched R5: 1.367/0.01223

 0.95 - - - - 0.950 - Mlig455_070380 {REF} {Length: 915} {TRANSSPLICED} {RNA1509_12311} {RNA1310_13342} {RNA815_9722.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA