M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19601

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19601 362 7.53 Mlig455_064158

Neo: -

Age: Down-Up-Down

 TMEM128 Mlig455_064158 {REF} {Length: 1846} {Human: ENSG00000132406, TMEM128, transmembrane protein 128, [RH, Score=72.8, Expect=2e-15]} {Mouse: ENSMUSG00000067365, Tmem128, transmembrane protein 128, [RH, Score=72.8, Expect=1e-15]} {Smed: dd_Smed_v6_7537_0_3, dd_Smed_v6_7537_0_3, [RH, Score=97.4, Expect=2e-25]} {RNA1509_19351} {RNA1310_36133, RNA1509_19351} {RNA1509_19351, RNA815_11134.1}

Cumulative graph for MligTC455_19601

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.606 3.363 0.07994 0.61818
RegionR2 0.712 3.363 0.48368 0.86722
RegionR3 0.606 3.363 0.51003 0.99864
RegionR4 0.93 3.363 0.32384 0.64128
RegionR5 1.705 3.363 0.00928 0.05473
RegionR6 0.612 3.363 0.51178 1.00000
RegionR7 0.905 3.363 0.37308 1.00000
RegionR8 1.136 3.363 0.29777 0.92775

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.569 3.363 0.15825 0.90140
RegenerationR2 -0.034 3.363 0.95182 1.00000
RegenerationR3 0.518 3.363 0.40946 0.80801
RegenerationR4 0.071 3.363 0.90536 1.00000
RegenerationR5 0.472 3.363 0.38032 0.78686
RegenerationR6 0.948 3.363 0.13340 0.44857
RegenerationBL 0.172 3.363 0.81178 1.00000
RegenerationTP 0.972 3.363 0.16984 0.60267


Genes with expression patterns similar to MligTC455_19601

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19601 362 7.53 Mlig455_064158

Neo: -

Age: Down-Up-Down

 TMEM128 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_064158 {REF} {Length: 1846} {Human: ENSG00000132406, TMEM128, transmembrane protein 128, [RH, Score=72.8, Expect=2e-15]} {Mouse: ENSMUSG00000067365, Tmem128, transmembrane protein 128, [RH, Score=72.8, Expect=1e-15]} {Smed: dd_Smed_v6_7537_0_3, dd_Smed_v6_7537_0_3, [RH, Score=97.4, Expect=2e-25]} {RNA1509_19351} {RNA1310_36133, RNA1509_19351} {RNA1509_19351, RNA815_11134.1}
2. MligTC455_30997 149 3.11 Mlig455_042252

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.584

 ANKRD44 1.783 - - - 0.962 - 0.821 Mlig455_042252 {REF} {Length: 2295} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=79.7]; Ankyrin repeats (many copies) [PF13637.8, score=64.0]; Ankyrin repeats (many copies) [PF13857.8, score=55.3]; Ankyrin repeat [PF00023.32, score=52.0]; Ankyrin repeat [PF13606.8, score=47.2]} {Human: ENSG00000065413, ANKRD44, ankyrin repeat domain 44, [Score=60.8, Expect=2e-09]} {Mouse: ENSMUSG00000052331, Ankrd44, ankyrin repeat domain 44, [Score=60.5, Expect=2e-09]; ENSMUSG00000014496, Ankrd28, ankyrin repeat domain 28, [Score=58.5, Expect=9e-09]; ENSMUSG00000014498, Ankrd52, ankyrin repeat domain 52, [Score=57.8, Expect=2e-08]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=50.1, Expect=3e-06]} {Smed: dd_Smed_v6_2072_0_24, dd_Smed_v6_2072_0_24, [Score=53.9, Expect=1e-07]} {RNA1509_27731} {RNA1310_10050} {RNA815_10088.1}
3. MligTC455_21528 367 7.64 Mlig455_015393, Mlig455_015396

Neo: Int S/G2/M

Age: -

 ASCC3 0.971 - - - 0.971 - -

Mlig455_015393 {REF} {Length: 8035} {Pfam: Sec63 Brl domain [PF02889.18, score=439.6]; DEAD/DEAH box helicase [PF00270.31, score=178.1]; Type III restriction enzyme, res subunit [PF04851.17, score=81.0]; Helicase conserved C-terminal domain [PF00271.33, score=48.8]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.2]; AAA domain [PF13245.8, score=22.7]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2186, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1679, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1927, Expect=0.0]} {RNA1509_2241, RNA1509_55312} {RNA1310_438, RNA1509_2241, RNA1509_55312} {RNA1509_2241, RNA1509_55312, RNA815_146.1}

Mlig455_015396 {REF} {Length: 7701} {Pfam: Sec63 Brl domain [PF02889.18, score=440.8]; DEAD/DEAH box helicase [PF00270.31, score=177.4]; Type III restriction enzyme, res subunit [PF04851.17, score=80.9]; Helicase conserved C-terminal domain [PF00271.33, score=48.4]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.1]; AAA domain [PF13245.8, score=22.2]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2187, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1677, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1929, Expect=0.0]} {RNA1509_2241} {RNA1310_438} {RNA815_146.1}
4. MligTC455_45472 897 18.69 Mlig455_025381, Mlig455_025432

Neo: Irradiation

Age: -

 RNF11 0.956 - - - 0.956 - -

Mlig455_025381 {REF} {Length: 3329} {Pfam: Ring finger domain [PF13639.8, score=48.5]; RING-like zinc finger [PF17123.7, score=41.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=31.4]; RING-type zinc-finger [PF13445.8, score=29.9]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=29.9]; zinc-RING finger domain [PF14634.8, score=29.5]; RING-H2 zinc finger domain [PF12678.9, score=28.7]; Prokaryotic RING finger family 4 [PF14447.8, score=21.4]} {Human: ENSG00000123091, RNF11, ring finger protein 11, [Score=117, Expect=3e-33]} {Mouse: ENSMUSG00000028557, Rnf11, ring finger protein 11, [Score=117, Expect=2e-33]} {Dmel: FBgn0052850, CG32850, [RH, Score=108, Expect=3e-30]} {Celegans: WBGene00007226, C01G6.4, [RH, Score=92.8, Expect=6e-24]} {Smed: dd_Smed_v6_6913_0_1, dd_Smed_v6_6913_0_1, [Score=110, Expect=4e-30]} {RNA1509_28986} {RNA1310_27389} {RNA815_8062.2}

Mlig455_025432 {REF} {Length: 3400} {Pfam: Ring finger domain [PF13639.8, score=49.6]; RING-like zinc finger [PF17123.7, score=43.2]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=30.5]; RING-type zinc-finger [PF13445.8, score=30.0]; zinc-RING finger domain [PF14634.8, score=29.8]; RING-H2 zinc finger domain [PF12678.9, score=28.8]; Prokaryotic RING finger family 4 [PF14447.8, score=21.6]} {Human: ENSG00000123091, RNF11, ring finger protein 11, [Score=120, Expect=6e-34]} {Mouse: ENSMUSG00000028557, Rnf11, ring finger protein 11, [Score=119, Expect=4e-34]} {Dmel: FBgn0052850, CG32850, [RH, Score=109, Expect=3e-30]} {Celegans: WBGene00007226, C01G6.4, [RH, Score=92.4, Expect=2e-23]} {Smed: dd_Smed_v6_6913_0_1, dd_Smed_v6_6913_0_1, [Score=111, Expect=3e-30]} {RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183} {RNA1310_25947, RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183} {RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183, RNA815_8062.1}
5. MligTC455_36454 246 5.12 Mlig455_035641

Neo: Int S/G2/M

Age: Up-Down-Up, logFC(26M/2M)=0.639

 ADTRP 0.951 - - - - - 0.951 Mlig455_035641 {REF} {Length: 2110} {Pfam: FAR-17a/AIG1-like protein [PF04750.16, score=133.6]} {Human: ENSG00000111863, ADTRP, androgen dependent TFPI regulating protein, [RH, Score=99.8, Expect=6e-25]; ENSG00000146416, AIG1, androgen induced 1, [RH, Score=96.7, Expect=8e-24]} {Mouse: ENSMUSG00000019806, Aig1, androgen-induced 1, [RH, Score=102, Expect=7e-26]} {Dmel: FBgn0031245, CG3625, [RH, Score=108, Expect=2e-28]} {Celegans: WBGene00007995, C37E2.3, [RH, Score=48.5, Expect=1e-06]} {Smed: dd_Smed_v6_17501_0_1, dd_Smed_v6_17501_0_1, [RH, Score=73.9, Expect=5e-16]} {RNA1509_7871} {RNA1310_23743.2, RNA1509_7871} {RNA1509_7871, RNA815_12495.1}
6. MligTC455_13334 267 5.56 Mlig455_013399, Mlig455_013440

Neo: Irradiation

Age: Up-Up-Up, logFC(26M/2M)=1.160

Region-enriched R3: 2.283/0.04678

 ENOSF1 0.95 - - 0.950 - - -

Mlig455_013399 {REF} {Length: 1525} {Pfam: Enolase C-terminal domain-like [PF13378.8, score=175.0]; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain [PF02746.18, score=32.2]} {Human: ENSG00000132199, ENOSF1, enolase superfamily member 1, [RH, Score=527, Expect=0.0]} {Smed: dd_Smed_v6_2923_0_1, dd_Smed_v6_2923_0_1, [RH, Score=506, Expect=1e-178]} {RNA1509_34653} {RNA1310_20080} {RNA815_22924.1}

Mlig455_013440 {REF} {Length: 2092} {Pfam: Enolase C-terminal domain-like [PF13378.8, score=171.0]; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain [PF02746.18, score=33.4]} {Human: ENSG00000132199, ENOSF1, enolase superfamily member 1, [RH, Score=515, Expect=0.0]} {Smed: dd_Smed_v6_2923_0_1, dd_Smed_v6_2923_0_1, [RH, Score=495, Expect=2e-174]} {RNA1509_34653} {RNA1310_20080, RNA1509_34653} {RNA1509_34653, RNA815_22924.1}
7. MligTC455_36323 204 4.24 Mlig455_013277

Neo: -

Age: logFC(26M/2M)=0.456

 TMC5 0.95 - - - 0.950 - - Mlig455_013277 {REF} {Length: 3130} {TRANSSPLICED} {Pfam: TMC domain [PF07810.15, score=52.5]} {Human: ENSG00000103534, TMC5, transmembrane channel like 5, [Score=112, Expect=4e-25]} {Mouse: ENSMUSG00000042246, Tmc7, transmembrane channel-like gene family 7, [Score=96.7, Expect=3e-20]; ENSMUSG00000030650, Tmc5, transmembrane channel-like gene family 5, [Score=95.5, Expect=7e-20]} {RNA1509_58030} {RNA1310_8396} {RNA815_832.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA