M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36323

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36323 204 4.24 Mlig455_013277

Neo: -

Age: logFC(26M/2M)=0.456

 TMC5 Mlig455_013277 {REF} {Length: 3130} {TRANSSPLICED} {Pfam: TMC domain [PF07810.15, score=52.5]} {Human: ENSG00000103534, TMC5, transmembrane channel like 5, [Score=112, Expect=4e-25]} {Mouse: ENSMUSG00000042246, Tmc7, transmembrane channel-like gene family 7, [Score=96.7, Expect=3e-20]; ENSMUSG00000030650, Tmc5, transmembrane channel-like gene family 5, [Score=95.5, Expect=7e-20]} {RNA1509_58030} {RNA1310_8396} {RNA815_832.1}

Cumulative graph for MligTC455_36323

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.84 2.739 0.59623 1.00000
RegionR2 1.561 2.739 0.04938 0.26503
RegionR3 1.05 2.739 0.09152 0.53350
RegionR4 -0.145 2.739 0.84766 1.00000
RegionR5 1.23 2.739 0.02229 0.10489
RegionR6 0.388 2.739 0.55651 1.00000
RegionR7 -0.676 2.739 0.53917 1.00000
RegionR8 -2.567 2.739 0.14273 0.68976

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.317 2.739 0.46319 1.00000
RegenerationR2 -1.226 2.739 0.08459 0.46708
RegenerationR3 0.111 2.739 0.86240 1.00000
RegenerationR4 0.371 2.739 0.54161 0.88920
RegenerationR5 0.6 2.739 0.27547 0.70457
RegenerationR6 -0.477 2.739 0.54950 0.83871
RegenerationBL -3.826 2.739 0.16154 0.48198
RegenerationTP 3.479 2.739 0.00128 0.05475


Genes with expression patterns similar to MligTC455_36323

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36323 204 4.24 Mlig455_013277

Neo: -

Age: logFC(26M/2M)=0.456

 TMC5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_013277 {REF} {Length: 3130} {TRANSSPLICED} {Pfam: TMC domain [PF07810.15, score=52.5]} {Human: ENSG00000103534, TMC5, transmembrane channel like 5, [Score=112, Expect=4e-25]} {Mouse: ENSMUSG00000042246, Tmc7, transmembrane channel-like gene family 7, [Score=96.7, Expect=3e-20]; ENSMUSG00000030650, Tmc5, transmembrane channel-like gene family 5, [Score=95.5, Expect=7e-20]} {RNA1509_58030} {RNA1310_8396} {RNA815_832.1}
2. MligTC455_35935 1080 22.49 Mlig455_052154, Mlig455_054164, Mlig455_060703, Mlig455_061061

Neo: Irradiation

Age: logFC(26M/2M)=0.223

Region-specific R5: 4.398

Region-enriched R5: 3.799/0.00000
Region-enriched R6: 2.385/0.00008

 1.814 - 0.853 - 0.961 - -

Mlig455_052154 {REF} {Length: 2638} {Pfam: P21-Rho-binding domain [PF00786.30, score=48.6]} {RNA1509_18159, RNA1509_58379, RNA1509_7763} {RNA1310_9605, RNA1509_18159, RNA1509_58379, RNA1509_7763} {RNA1509_18159, RNA1509_58379, RNA1509_7763, RNA815_13083}

Mlig455_054164 {REF} {Length: 2298} {Pfam: P21-Rho-binding domain [PF00786.30, score=53.8]} {RNA1509_7763} {RNA1310_9605} {RNA815_13083}

Mlig455_060703 {REF} {Length: 444} {NoTransDecoderORF} {RNA1509_18159} {RNA1310_9605} {RNA815_15790.2}

Mlig455_061061 {REF} {Length: 1087} {Pfam: Cysteine rich repeat [PF02363.21, score=18.7]}
3. MligTC455_15277 106 2.2 Mlig455_011500

Neo: -

Age: Up-Down-Up

 1.738 - - - 0.951 - 0.787 Mlig455_011500 {REF} {Length: 4662} {RNA1509_54224} {RNA1310_34870} {RNA815_36274}
4. MligTC455_42431 155 3.24 Mlig455_022972

Neo: -

Age: -

Region-enriched R5: 2.041/0.00830

 1.731 - - - - 0.770 0.961 Mlig455_022972 {REF} {Length: 2758} {TRANSSPLICED} {Pfam: Ribosomal L32p protein family [PF01783.25, score=27.0]} {RNA1509_49961} {RNA1310_56677} {RNA815_29857}
5. MligTC455_46929 325 6.77 Mlig455_050152

Neo: -

Age: Down-Up-Up

 SLC25A28 1.722 - - - 0.970 - 0.752 Mlig455_050152 {REF} {Length: 3037} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=199.1]} {Human: ENSG00000155287, SLC25A28, solute carrier family 25 member 28, [RH, Score=305, Expect=4e-102]} {Mouse: ENSMUSG00000040414, Slc25a28, solute carrier family 25, member 28, [RH, Score=303, Expect=3e-101]} {Dmel: FBgn0039561, mfrn, mitoferrin, [Score=265, Expect=2e-86]} {Celegans: WBGene00012204, mfn-1, Mitoferrin, [RH, Score=261, Expect=8e-86]} {Smed: dd_Smed_v6_11061_0_1, dd_Smed_v6_11061_0_1, [RH, Score=325, Expect=1e-111]} {RNA1509_13467, RNA1509_46568} {RNA1310_10438, RNA1509_13467, RNA1509_46568} {RNA1509_13467, RNA1509_46568, RNA815_3553.1}
6. MligTC455_45472 897 18.69 Mlig455_025381, Mlig455_025432

Neo: Irradiation

Age: -

 RNF11 0.981 - - - 0.981 - -

Mlig455_025381 {REF} {Length: 3329} {Pfam: Ring finger domain [PF13639.8, score=48.5]; RING-like zinc finger [PF17123.7, score=41.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=31.4]; RING-type zinc-finger [PF13445.8, score=29.9]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=29.9]; zinc-RING finger domain [PF14634.8, score=29.5]; RING-H2 zinc finger domain [PF12678.9, score=28.7]; Prokaryotic RING finger family 4 [PF14447.8, score=21.4]} {Human: ENSG00000123091, RNF11, ring finger protein 11, [Score=117, Expect=3e-33]} {Mouse: ENSMUSG00000028557, Rnf11, ring finger protein 11, [Score=117, Expect=2e-33]} {Dmel: FBgn0052850, CG32850, [RH, Score=108, Expect=3e-30]} {Celegans: WBGene00007226, C01G6.4, [RH, Score=92.8, Expect=6e-24]} {Smed: dd_Smed_v6_6913_0_1, dd_Smed_v6_6913_0_1, [Score=110, Expect=4e-30]} {RNA1509_28986} {RNA1310_27389} {RNA815_8062.2}

Mlig455_025432 {REF} {Length: 3400} {Pfam: Ring finger domain [PF13639.8, score=49.6]; RING-like zinc finger [PF17123.7, score=43.2]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=30.5]; RING-type zinc-finger [PF13445.8, score=30.0]; zinc-RING finger domain [PF14634.8, score=29.8]; RING-H2 zinc finger domain [PF12678.9, score=28.8]; Prokaryotic RING finger family 4 [PF14447.8, score=21.6]} {Human: ENSG00000123091, RNF11, ring finger protein 11, [Score=120, Expect=6e-34]} {Mouse: ENSMUSG00000028557, Rnf11, ring finger protein 11, [Score=119, Expect=4e-34]} {Dmel: FBgn0052850, CG32850, [RH, Score=109, Expect=3e-30]} {Celegans: WBGene00007226, C01G6.4, [RH, Score=92.4, Expect=2e-23]} {Smed: dd_Smed_v6_6913_0_1, dd_Smed_v6_6913_0_1, [Score=111, Expect=3e-30]} {RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183} {RNA1310_25947, RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183} {RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183, RNA815_8062.1}
7. MligTC455_43235 557 11.61 Mlig455_006186, Mlig455_065226

Neo: -

Age: Down-Up-Up

 0.962 - - - - - 0.962

Mlig455_006186 {REF} {Length: 813} {TRANSSPLICED} {RNA1509_28487, RNA1509_36490} {RNA1310_42840, RNA1509_28487, RNA1509_36490} {RNA1509_28487, RNA1509_36490, RNA815_21578}

Mlig455_065226 {REF} {Length: 813} {TRANSSPLICED} {RNA1509_28487} {RNA1310_42840} {RNA815_21578}
8. MligTC455_51815 60 1.25 Mlig455_002796

Neo: -

Age: Down-Down-Up

 ZDHHC17 0.958 - - - 0.958 - - Mlig455_002796 {REF} {Length: 3687} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=123.4]; Ankyrin repeats (many copies) [PF13857.8, score=92.9]; Ankyrin repeats (many copies) [PF13637.8, score=90.4]; DHHC palmitoyltransferase [PF01529.22, score=80.7]; Ankyrin repeat [PF13606.8, score=78.2]; Ankyrin repeat [PF00023.32, score=73.6]} {Human: ENSG00000186908, ZDHHC17, zinc finger DHHC-type containing 17, [Score=160, Expect=3e-41]} {Mouse: ENSMUSG00000035798, Zdhhc17, zinc finger, DHHC domain containing 17, [Score=157, Expect=1e-40]} {Dmel: FBgn0029137, Patsas, [Score=311, Expect=5e-98]} {Celegans: WBGene00019257, dhhc-13, Palmitoyltransferase, [Score=87.0, Expect=9e-18]} {Smed: dd_Smed_v6_16314_0_1, dd_Smed_v6_16314_0_1, [Score=217, Expect=3e-63]} {RNA1509_25007} {RNA1310_9910} {RNA815_13589}
9. MligTC455_12264 440 9.18 Mlig455_066614

Neo: -

Age: -

Region-enriched R4: 2.233/0.02565
Region-enriched R5: 1.752/0.03591

 0.955 - - - - - 0.955 Mlig455_066614 {REF} {Length: 460} {TRANSSPLICED} {RNA1509_36180} {RNA1310_59859, RNA1509_36180} {RNA1509_36180, RNA815_40987}
10. MligTC455_49796 155 3.22 Mlig455_008307

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.906

 0.953 - - - - - 0.953 Mlig455_008307 {REF} {Length: 1315} {RNA1509_54157} {RNA1310_15226.1} {RNA815_21558}
11. MligTC455_50430 9987 208.06 Mlig455_054036

Neo: Int S/G2/M

Age: -

 RPL39 0.952 - - - 0.952 - - Mlig455_054036 {REF} {Length: 322} {TRANSSPLICED} {Pfam: Ribosomal L39 protein [PF00832.22, score=70.5]} {Human: ENSG00000198918, RPL39, ribosomal protein L39, [RH, Score=80.1, Expect=5e-22]} {Mouse: ENSMUSG00000079641, Rpl39, ribosomal protein L39, [RH, Score=80.1, Expect=3e-22]; ENSMUSG00000039209, Rpl39l, ribosomal protein L39-like, [RH, Score=77.0, Expect=7e-21]} {Dmel: FBgn0023170, RpL39, Ribosomal protein L39, [RH, Score=70.1, Expect=2e-18]} {Celegans: WBGene00004453, rpl-39, 60S ribosomal protein L39, [RH, Score=71.6, Expect=4e-19]} {Smed: dd_Smed_v6_67236_0_1, dd_Smed_v6_67236_0_1, [RH, Score=72.0, Expect=3e-19]} {RNA1509_15525, RNA1509_19266, RNA1509_22186, RNA1509_32579, RNA1509_39016} {RNA1310_100169.2, RNA1509_15525, RNA1509_19266, RNA1509_22186, RNA1509_32579, RNA1509_39016} {RNA1509_15525, RNA1509_19266, RNA1509_22186, RNA1509_32579, RNA1509_39016, RNA815_47849}
12. MligTC455_19601 362 7.53 Mlig455_064158

Neo: -

Age: Down-Up-Down

 TMEM128 0.95 - - - 0.950 - - Mlig455_064158 {REF} {Length: 1846} {Human: ENSG00000132406, TMEM128, transmembrane protein 128, [RH, Score=72.8, Expect=2e-15]} {Mouse: ENSMUSG00000067365, Tmem128, transmembrane protein 128, [RH, Score=72.8, Expect=1e-15]} {Smed: dd_Smed_v6_7537_0_3, dd_Smed_v6_7537_0_3, [RH, Score=97.4, Expect=2e-25]} {RNA1509_19351} {RNA1310_36133, RNA1509_19351} {RNA1509_19351, RNA815_11134.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA