TomoSeq data search

Data search

Results for MligTC455_45472

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_45472

897

18.69

Mlig455_025381, Mlig455_025432

Neo: Irradiation

Age: -

RNF11

Mlig455_025381 {REF} {Length: 3329} {Pfam: Ring finger domain [PF13639.8, score=48.5]; RING-like zinc finger [PF17123.7, score=41.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=31.4]; RING-type zinc-finger [PF13445.8, score=29.9]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=29.9]; zinc-RING finger domain [PF14634.8, score=29.5]; RING-H2 zinc finger domain [PF12678.9, score=28.7]; Prokaryotic RING finger family 4 [PF14447.8, score=21.4]} {Human: ENSG00000123091, RNF11, ring finger protein 11, [Score=117, Expect=3e-33]} {Mouse: ENSMUSG00000028557, Rnf11, ring finger protein 11, [Score=117, Expect=2e-33]} {Dmel: FBgn0052850, CG32850, [RH, Score=108, Expect=3e-30]} {Celegans: WBGene00007226, C01G6.4, [RH, Score=92.8, Expect=6e-24]} {Smed: dd_Smed_v6_6913_0_1, dd_Smed_v6_6913_0_1, [Score=110, Expect=4e-30]} {RNA1509_28986} {RNA1310_27389} {RNA815_8062.2}

Mlig455_025432 {REF} {Length: 3400} {Pfam: Ring finger domain [PF13639.8, score=49.6]; RING-like zinc finger [PF17123.7, score=43.2]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=30.5]; RING-type zinc-finger [PF13445.8, score=30.0]; zinc-RING finger domain [PF14634.8, score=29.8]; RING-H2 zinc finger domain [PF12678.9, score=28.8]; Prokaryotic RING finger family 4 [PF14447.8, score=21.6]} {Human: ENSG00000123091, RNF11, ring finger protein 11, [Score=120, Expect=6e-34]} {Mouse: ENSMUSG00000028557, Rnf11, ring finger protein 11, [Score=119, Expect=4e-34]} {Dmel: FBgn0052850, CG32850, [RH, Score=109, Expect=3e-30]} {Celegans: WBGene00007226, C01G6.4, [RH, Score=92.4, Expect=2e-23]} {Smed: dd_Smed_v6_6913_0_1, dd_Smed_v6_6913_0_1, [Score=111, Expect=3e-30]} {RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183} {RNA1310_25947, RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183} {RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183, RNA815_8062.1}

Cumulative graph for MligTC455_45472

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.031	4.533	0.29878	0.94828
RegionR2	1.256	4.533	0.02970	0.19501
RegionR3	-0.351	4.533	0.44472	0.95838
RegionR4	-0.043	4.533	0.92263	1.00000
RegionR5	0.263	4.533	0.50548	0.86842
RegionR6	0.17	4.533	0.69790	1.00000
RegionR7	-0.183	4.533	0.73088	1.00000
RegionR8	-0.08	4.533	0.89950	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.323	4.533	0.28938	0.98735
RegenerationR2	0.053	4.533	0.92133	1.00000
RegenerationR3	0.84	4.533	0.15707	0.58861
RegenerationR4	-0.558	4.533	0.31851	0.75678
RegenerationR5	0.601	4.533	0.24053	0.67403
RegenerationR6	0.168	4.533	0.77199	0.96324
RegenerationBL	-0.824	4.533	0.30794	0.67260
RegenerationTP	0.522	4.533	0.45049	0.86753

Genes with expression patterns similar to MligTC455_45472

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_45472	897	18.69	Mlig455_025381, Mlig455_025432	Neo: Irradiation Age: -	RNF11	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_025381 {REF} {Length: 3329} {Pfam: Ring finger domain [PF13639.8, score=48.5]; RING-like zinc finger [PF17123.7, score=41.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=31.4]; RING-type zinc-finger [PF13445.8, score=29.9]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=29.9]; zinc-RING finger domain [PF14634.8, score=29.5]; RING-H2 zinc finger domain [PF12678.9, score=28.7]; Prokaryotic RING finger family 4 [PF14447.8, score=21.4]} {Human: ENSG00000123091, RNF11, ring finger protein 11, [Score=117, Expect=3e-33]} {Mouse: ENSMUSG00000028557, Rnf11, ring finger protein 11, [Score=117, Expect=2e-33]} {Dmel: FBgn0052850, CG32850, [RH, Score=108, Expect=3e-30]} {Celegans: WBGene00007226, C01G6.4, [RH, Score=92.8, Expect=6e-24]} {Smed: dd_Smed_v6_6913_0_1, dd_Smed_v6_6913_0_1, [Score=110, Expect=4e-30]} {RNA1509_28986} {RNA1310_27389} {RNA815_8062.2} Mlig455_025432 {REF} {Length: 3400} {Pfam: Ring finger domain [PF13639.8, score=49.6]; RING-like zinc finger [PF17123.7, score=43.2]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=35.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=30.5]; RING-type zinc-finger [PF13445.8, score=30.0]; zinc-RING finger domain [PF14634.8, score=29.8]; RING-H2 zinc finger domain [PF12678.9, score=28.8]; Prokaryotic RING finger family 4 [PF14447.8, score=21.6]} {Human: ENSG00000123091, RNF11, ring finger protein 11, [Score=120, Expect=6e-34]} {Mouse: ENSMUSG00000028557, Rnf11, ring finger protein 11, [Score=119, Expect=4e-34]} {Dmel: FBgn0052850, CG32850, [RH, Score=109, Expect=3e-30]} {Celegans: WBGene00007226, C01G6.4, [RH, Score=92.4, Expect=2e-23]} {Smed: dd_Smed_v6_6913_0_1, dd_Smed_v6_6913_0_1, [Score=111, Expect=3e-30]} {RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183} {RNA1310_25947, RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183} {RNA1509_15326, RNA1509_17905, RNA1509_41650, RNA1509_56183, RNA815_8062.1}
2.	MligTC455_21528	367	7.64	Mlig455_015393, Mlig455_015396	Neo: Int S/G2/M Age: -	ASCC3	1.773	-	-	0.821	0.952	-	-	Mlig455_015393 {REF} {Length: 8035} {Pfam: Sec63 Brl domain [PF02889.18, score=439.6]; DEAD/DEAH box helicase [PF00270.31, score=178.1]; Type III restriction enzyme, res subunit [PF04851.17, score=81.0]; Helicase conserved C-terminal domain [PF00271.33, score=48.8]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.2]; AAA domain [PF13245.8, score=22.7]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2186, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1679, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1927, Expect=0.0]} {RNA1509_2241, RNA1509_55312} {RNA1310_438, RNA1509_2241, RNA1509_55312} {RNA1509_2241, RNA1509_55312, RNA815_146.1} Mlig455_015396 {REF} {Length: 7701} {Pfam: Sec63 Brl domain [PF02889.18, score=440.8]; DEAD/DEAH box helicase [PF00270.31, score=177.4]; Type III restriction enzyme, res subunit [PF04851.17, score=80.9]; Helicase conserved C-terminal domain [PF00271.33, score=48.4]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.1]; AAA domain [PF13245.8, score=22.2]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2187, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1677, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1929, Expect=0.0]} {RNA1509_2241} {RNA1310_438} {RNA815_146.1}
3.	MligTC455_36323	204	4.24	Mlig455_013277	Neo: - Age: logFC(26M/2M)=0.456	TMC5	0.981	-	-	-	0.981	-	-	Mlig455_013277 {REF} {Length: 3130} {TRANSSPLICED} {Pfam: TMC domain [PF07810.15, score=52.5]} {Human: ENSG00000103534, TMC5, transmembrane channel like 5, [Score=112, Expect=4e-25]} {Mouse: ENSMUSG00000042246, Tmc7, transmembrane channel-like gene family 7, [Score=96.7, Expect=3e-20]; ENSMUSG00000030650, Tmc5, transmembrane channel-like gene family 5, [Score=95.5, Expect=7e-20]} {RNA1509_58030} {RNA1310_8396} {RNA815_832.1}
4.	MligTC455_20175	294	6.12	Mlig455_005758	Neo: - Age: Down-Up-Down	PLEKHD1	0.966	-	-	-	0.966	-	-	Mlig455_005758 {REF} {Length: 3388} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=46.6]} {Human: ENSG00000175985, PLEKHD1, pleckstrin homology and coiled-coil domain containing D1, [RH, Score=134, Expect=6e-34]} {Mouse: ENSMUSG00000066438, Plekhd1, pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, [RH, Score=134, Expect=6e-34]} {Smed: dd_Smed_v6_3737_0_1, dd_Smed_v6_3737_0_1, [RH, Score=175, Expect=7e-50]} {RNA1509_16240, RNA1509_17876, RNA1509_41234, RNA1509_59092} {RNA1310_12965, RNA1509_16240, RNA1509_41234, RNA1509_59092} {RNA1509_16240, RNA1509_41234, RNA1509_59092, RNA815_14309.1}
5.	MligTC455_27385	1241	25.86	Mlig455_035188	Neo: Int S/G2/M Age: logFC(26M/2M)=0.298		0.962	-	0.962	-	-	-	-	Mlig455_035188 {REF} {Length: 2750} {TRANSSPLICED} {Pfam: Mitochondrial fission regulator [PF05308.13, score=36.1]} {RNA1509_8038} {RNA1310_16622, RNA1509_8038} {RNA1509_8038, RNA815_23974}
6.	MligTC455_52882	325	6.78	Mlig455_018278	Neo: - Age: -		0.958	-	-	-	-	-	0.958	Mlig455_018278 {REF} {Length: 3774} {TRANSSPLICED} {RNA1509_55279} {RNA1310_9272} {RNA815_18292}
7.	MligTC455_19601	362	7.53	Mlig455_064158	Neo: - Age: Down-Up-Down	TMEM128	0.956	-	-	-	0.956	-	-	Mlig455_064158 {REF} {Length: 1846} {Human: ENSG00000132406, TMEM128, transmembrane protein 128, [RH, Score=72.8, Expect=2e-15]} {Mouse: ENSMUSG00000067365, Tmem128, transmembrane protein 128, [RH, Score=72.8, Expect=1e-15]} {Smed: dd_Smed_v6_7537_0_3, dd_Smed_v6_7537_0_3, [RH, Score=97.4, Expect=2e-25]} {RNA1509_19351} {RNA1310_36133, RNA1509_19351} {RNA1509_19351, RNA815_11134.1}
8.	MligTC455_46929	325	6.77	Mlig455_050152	Neo: - Age: Down-Up-Up	SLC25A28	0.954	-	-	-	0.954	-	-	Mlig455_050152 {REF} {Length: 3037} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=199.1]} {Human: ENSG00000155287, SLC25A28, solute carrier family 25 member 28, [RH, Score=305, Expect=4e-102]} {Mouse: ENSMUSG00000040414, Slc25a28, solute carrier family 25, member 28, [RH, Score=303, Expect=3e-101]} {Dmel: FBgn0039561, mfrn, mitoferrin, [Score=265, Expect=2e-86]} {Celegans: WBGene00012204, mfn-1, Mitoferrin, [RH, Score=261, Expect=8e-86]} {Smed: dd_Smed_v6_11061_0_1, dd_Smed_v6_11061_0_1, [RH, Score=325, Expect=1e-111]} {RNA1509_13467, RNA1509_46568} {RNA1310_10438, RNA1509_13467, RNA1509_46568} {RNA1509_13467, RNA1509_46568, RNA815_3553.1}
9.	MligTC455_27166	1113	23.18	Mlig455_046219	Neo: Int S/G2/M Age: Up-Down-Down	BAZ1B	0.952	-	0.952	-	-	-	-	Mlig455_046219 {REF} {Length: 7068} {TRANSSPLICED} {Pfam: ATP-utilising chromatin assembly and remodelling N-terminal [PF10537.11, score=69.9]; Bromodomain [PF00439.27, score=69.7]; PHD-finger [PF00628.31, score=61.9]; Williams-Beuren syndrome DDT (WSD), D-TOX E motif [PF15613.8, score=51.6]; PHD-finger [PF13831.8, score=21.3]} {Human: ENSG00000009954, BAZ1B, bromodomain adjacent to zinc finger domain 1B, [RH, Score=283, Expect=1e-76]} {Mouse: ENSMUSG00000002748, Baz1b, bromodomain adjacent to zinc finger domain, 1B, [RH, Score=363, Expect=1e-102]} {Dmel: FBgn0033636, tou, toutatis, [RH, Score=102, Expect=4e-21]} {Celegans: WBGene00001470, baz-2, Bromodomain Adjacent to Zinc finger domain, 2A/2B, homolog, [RH, Score=72.0, Expect=4e-12]} {Smed: dd_Smed_v6_5428_0_1, dd_Smed_v6_5428_0_1, [RH, Score=451, Expect=3e-132]} {RNA1509_21911, RNA1509_3531, RNA1509_47176} {RNA1310_881.1, RNA1509_21911, RNA1509_3531, RNA1509_47176} {RNA1509_21911, RNA1509_3531, RNA1509_47176, RNA815_514}

Berezikov Lab - 2020-2021 © ERIBA