TomoSeq data search

Data search

Results for MligTC455_19648

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_19648	125	2.60	Mlig455_034667, Mlig455_067587	Neo: - Age: - Regeneration-downregulated BL: -7.490 Regeneration-depleted BL: -7.490	CHRNA7, CHRNA9	Mlig455_034667 {REF} {Length: 1938} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=125.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=97.4]} {Human: ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=210, Expect=4e-62]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=207, Expect=9e-61]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=207, Expect=2e-61]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=205, Expect=4e-60]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=202, Expect=4e-59]; ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=200, Expect=1e-58]} {Mouse: ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=213, Expect=2e-63]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=206, Expect=1e-60]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=217, Expect=3e-64]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=207, Expect=2e-61]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=202, Expect=1e-58]} {RNA1310_33414.1} {RNA815_34654} Mlig455_067587 {REF} {Length: 1709} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=158.1]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=96.7]} {Human: ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=230, Expect=8e-69]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=230, Expect=8e-69]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=228, Expect=3e-68]; ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=224, Expect=1e-66]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=230, Expect=3e-69]; ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=227, Expect=3e-68]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=221, Expect=8e-66]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=237, Expect=3e-71]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=236, Expect=1e-71]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=232, Expect=2e-69]} {RNA1310_33414.2} {RNA815_34654}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_19648

125

2.60

Mlig455_034667, Mlig455_067587

Neo: -

Age: -

Regeneration-downregulated BL: -7.490

Regeneration-depleted BL: -7.490

CHRNA7, CHRNA9

Mlig455_034667 {REF} {Length: 1938} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=125.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=97.4]} {Human: ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=210, Expect=4e-62]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=207, Expect=9e-61]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=207, Expect=2e-61]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=205, Expect=4e-60]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=202, Expect=4e-59]; ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=200, Expect=1e-58]} {Mouse: ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=213, Expect=2e-63]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=206, Expect=1e-60]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=217, Expect=3e-64]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=207, Expect=2e-61]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=202, Expect=1e-58]} {RNA1310_33414.1} {RNA815_34654}

Mlig455_067587 {REF} {Length: 1709} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=158.1]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=96.7]} {Human: ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=230, Expect=8e-69]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=230, Expect=8e-69]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=228, Expect=3e-68]; ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=224, Expect=1e-66]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=230, Expect=3e-69]; ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=227, Expect=3e-68]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=221, Expect=8e-66]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=237, Expect=3e-71]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=236, Expect=1e-71]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=232, Expect=2e-69]} {RNA1310_33414.2} {RNA815_34654}

Cumulative graph for MligTC455_19648

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	2.146	2.108	0.34509	0.98870
RegionR2	-0.702	2.108	0.41644	0.80906
RegionR3	-0.813	2.108	0.27660	0.82038
RegionR4	-0.428	2.108	0.68630	0.97865
RegionR5	-2.095	2.108	0.01162	0.06443
RegionR6	0.103	2.108	0.90596	1.00000
RegionR7	0.422	2.108	0.64902	1.00000
RegionR8	1.367	2.108	0.27915	0.90460

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-8.006	2.108	0.11428	0.83878
RegenerationR2	-1.003	2.108	0.14483	0.57621
RegenerationR3	-1.334	2.108	0.11181	0.52493
RegenerationR4	-2.222	2.108	0.02815	0.26953
RegenerationR5	0.768	2.108	0.37518	0.78407
RegenerationR6	-1.979	2.108	0.01322	0.14187
RegenerationBL	-7.49	2.108	0.00017	0.00650	Specific for BL: -7.490
RegenerationTP	-1.861	2.108	0.09585	0.48514

Genes with expression patterns similar to MligTC455_19648

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_19648	125	2.6	Mlig455_034667, Mlig455_067587	Neo: - Age: - Regeneration-downregulated BL: -7.490 Regeneration-depleted BL: -7.490	CHRNA7, CHRNA9	5	1.000	-	1.000	1.000	1.000	1.000	Mlig455_034667 {REF} {Length: 1938} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=125.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=97.4]} {Human: ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=210, Expect=4e-62]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=207, Expect=9e-61]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=207, Expect=2e-61]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=205, Expect=4e-60]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=202, Expect=4e-59]; ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=200, Expect=1e-58]} {Mouse: ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=213, Expect=2e-63]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=206, Expect=1e-60]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=217, Expect=3e-64]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=207, Expect=2e-61]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=202, Expect=1e-58]} {RNA1310_33414.1} {RNA815_34654} Mlig455_067587 {REF} {Length: 1709} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=158.1]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=96.7]} {Human: ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=230, Expect=8e-69]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=230, Expect=8e-69]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=228, Expect=3e-68]; ENSG00000174343, CHRNA9, cholinergic receptor nicotinic alpha 9 subunit, [Score=224, Expect=1e-66]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=230, Expect=3e-69]; ENSMUSG00000029205, Chrna9, cholinergic receptor, nicotinic, alpha polypeptide 9, [Score=227, Expect=3e-68]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=221, Expect=8e-66]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=237, Expect=3e-71]} {Celegans: WBGene00000055, acr-16, Acetylcholine receptor subunit alpha-type acr-16, [Score=236, Expect=1e-71]} {Smed: dd_Smed_v6_23922_0_1, dd_Smed_v6_23922_0_1, [Score=232, Expect=2e-69]} {RNA1310_33414.2} {RNA815_34654}
2.	MligTC455_05052	39	0.82	Mlig455_060041	Neo: - Age: -		1.689	-	-	-	0.951	0.738	-	Mlig455_060041 {REF} {Length: 2112} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=44.4]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=24.5]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=18.7]} {Celegans: WBGene00015323, frpr-1, Probable G-protein coupled receptor frpr-1, [Score=53.9, Expect=8e-08]} {Smed: dd_Smed_v6_19397_0_1, dd_Smed_v6_19397_0_1, [Score=89.0, Expect=3e-19]} {RNA1310_29651} {RNA815_43873}
3.	MligTC455_03391	16	0.33	Mlig455_033757	Neo: - Age: -		0.977	-	-	0.977	-	-	-	Mlig455_033757 {REF} {Length: 1986} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=32.4]} {Smed: dd_Smed_v6_33870_0_1, dd_Smed_v6_33870_0_1, [RH, Score=102, Expect=1e-25]} {RNA1310_44705} {RNA815_38827}
4.	MligTC455_03392	16	0.33	Mlig455_033765	Neo: - Age: -		0.977	-	-	0.977	-	-	-	Mlig455_033765 {REF} {Length: 2002} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=31.8]} {Smed: dd_Smed_v6_33870_0_1, dd_Smed_v6_33870_0_1, [RH, Score=102, Expect=1e-25]} {RNA1310_44705} {RNA815_38827}
5.	MligTC455_27413	35	0.73	Mlig455_061428	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.295	TLN1	0.972	-	-	0.972	-	-	-	Mlig455_061428 {REF} {Length: 9019} {Pfam: I/LWEQ domain [PF01608.19, score=163.1]; Talin, middle domain [PF09141.12, score=97.8]; FERM central domain [PF00373.20, score=81.5]; Vinculin Binding Site [PF08913.12, score=27.2]} {Human: ENSG00000137076, TLN1, talin 1, [Score=1194, Expect=0.0]; ENSG00000171914, TLN2, talin 2, [Score=1147, Expect=0.0]} {Mouse: ENSMUSG00000028465, Tln1, talin 1, [Score=1186, Expect=0.0]; ENSMUSG00000052698, Tln2, talin 2, [Score=1142, Expect=0.0]} {Dmel: FBgn0260442, rhea, [Score=992, Expect=0.0]} {Celegans: WBGene00006771, tln-1, TaLiN; Talin, [Score=483, Expect=1e-137]} {Smed: dd_Smed_v6_876_0_1, dd_Smed_v6_876_0_1, [Score=769, Expect=0.0]} {RNA1509_38276} {RNA1310_1325} {RNA815_75.1}
6.	MligTC455_16849	24	0.5	Mlig455_061467	Neo: - Age: -		0.963	-	-	-	0.963	-	-	Mlig455_061467 {REF} {Length: 2785} {Pfam: Cryptococcal mannosyltransferase 1 [PF11735.10, score=25.6]} {RNA1509_16212} {RNA1310_23116} {RNA815_8985.3}
7.	MligTC455_50178	50	1.04	Mlig455_066991	Neo: - Age: - Region-enriched R2: 5.585/0.00318		0.959	-	-	-	0.959	-	-	Mlig455_066991 {REF} {Length: 982} {RNA1310_32436}
8.	MligTC455_12516	29	0.61	Mlig455_023132	Neo: - Age: -	FCN2	0.958	-	-	0.958	-	-	-	Mlig455_023132 {REF} {Length: 2517} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=61.0]; PAN domain [PF14295.8, score=24.6]} {Human: ENSG00000160339, FCN2, ficolin 2, [Score=75.9, Expect=9e-15]} {Mouse: ENSMUSG00000022309, Angpt1, angiopoietin 1, [Score=50.1, Expect=3e-06]; ENSMUSG00000027460, Angpt4, angiopoietin 4, [Score=49.7, Expect=4e-06]; ENSMUSG00000028553, Angptl3, angiopoietin-like 3, [Score=48.1, Expect=1e-05]; ENSMUSG00000002289, Angptl4, angiopoietin-like 4, [Score=47.8, Expect=1e-05]} {Dmel: FBgn0031804, CG9500, [Score=73.6, Expect=2e-14]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=49.7, Expect=2e-06]} {RNA1509_53291} {RNA1310_30694.1} {RNA815_10579.2}
9.	MligTC455_47245	73	1.52	Mlig455_027393	Neo: - Age: -		0.958	-	-	-	-	-	0.958	Mlig455_027393 {REF} {Length: 1984} {Dmel: FBgn0034267, CG4984, [Score=52.4, Expect=1e-07]} {RNA1310_36758} {RNA815_27905}
10.	MligTC455_53081	86	1.8	Mlig455_069206	Neo: Int S/G2/M Age: -	FANCD2	0.957	-	-	0.957	-	-	-	Mlig455_069206 {REF} {Length: 5289} {TRANSSPLICED} {Pfam: Fanconi anaemia protein FancD2 nuclease [PF14631.8, score=216.2]} {Human: ENSG00000144554, FANCD2, FA complementation group D2, [RH, Score=131, Expect=5e-30]} {Mouse: ENSMUSG00000034023, Fancd2, Fanconi anemia, complementation group D2, [RH, Score=130, Expect=7e-30]} {Smed: dd_Smed_v6_12881_0_1, dd_Smed_v6_12881_0_1, [RH, Score=70.9, Expect=5e-12]} {RNA1509_14338} {RNA1310_1038} {RNA815_21338}
11.	MligTC455_11836	23	0.47	Mlig455_002196	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_002196 {REF} {Length: 212} {NoTransDecoderORF} {RNA1509_39174} {RNA1310_96981.1} {RNA815_34070.1}
12.	MligTC455_26148	19	0.4	Mlig455_009882	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_009882 {REF} {Length: 2043} {Pfam: Methyltransferase domain [PF13383.8, score=62.4]; Methyltransferase FkbM domain [PF05050.14, score=29.9]} {Celegans: WBGene00012743, Y40H7A.3, [RH, Score=58.2, Expect=4e-09]} {Smed: dd_Smed_v6_3107_0_1, dd_Smed_v6_3107_0_1, [RH, Score=195, Expect=9e-58]} {RNA1310_27976} {RNA815_58780}
13.	MligTC455_45968	43	0.89	Mlig455_058916	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_058916 {REF} {Length: 3026} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=53.9]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=29.4]} {Smed: dd_Smed_v6_27761_0_1, dd_Smed_v6_27761_0_1, [RH, Score=105, Expect=7e-25]} {RNA1310_38706}
14.	MligTC455_10716	109	2.26	Mlig455_042739	Neo: - Age: - Region-enriched R5: 2.906/0.00315	MAPK8IP3	0.951	-	-	-	-	-	0.951	Mlig455_042739 {REF} {Length: 2108} {TRANSSPLICED} {Pfam: JNK_SAPK-associated protein-1 [PF09744.11, score=79.4]} {Human: ENSG00000138834, MAPK8IP3, mitogen-activated protein kinase 8 interacting protein 3, [Score=79.7, Expect=1e-15]} {Mouse: ENSMUSG00000024163, Mapk8ip3, mitogen-activated protein kinase 8 interacting protein 3, [Score=79.0, Expect=2e-15]} {Dmel: FBgn0024187, syd, sunday driver, [Score=78.6, Expect=1e-15]} {Celegans: WBGene00007860, rilp-1, RILP (Rab7-Interacting Lysosomal Protein) homolog, [Score=65.1, Expect=1e-11]} {Smed: dd_Smed_v6_3798_0_2, dd_Smed_v6_3798_0_2, [Score=70.5, Expect=3e-13]} {RNA1509_55505} {RNA1310_19989.2} {RNA815_12559.1}
15.	MligTC455_25472	100	2.07	Mlig455_040494	Neo: - Age: Up-Up-Down	RAPH1	0.951	-	-	0.951	-	-	-	Mlig455_040494 {REF} {Length: 1705} {Pfam: PH domain [PF00169.31, score=40.6]} {Human: ENSG00000173166, RAPH1, Ras association (RalGDS/AF-6) and pleckstrin homology domains 1, [Score=107, Expect=2e-26]} {Mouse: ENSMUSG00000026014, Raph1, Ras association (RalGDS/AF-6) and pleckstrin homology domains 1, [Score=104, Expect=7e-26]} {Dmel: FBgn0261811, pico, [Score=88.2, Expect=4e-20]} {Celegans: WBGene00003243, mig-10, Abnormal cell migration protein 10, [Score=90.5, Expect=3e-21]} {Smed: dd_Smed_v6_3216_0_1, dd_Smed_v6_3216_0_1, [Score=120, Expect=9e-32]} {RNA1509_24403} {RNA1310_12419} {RNA815_13072}