M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_19778

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_19778 115 2.41 Mlig455_043422

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.387

Region-enriched R4: 3.409/0.01435

 ARIH2 Mlig455_043422 {REF} {Length: 3573} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=61.2]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.2]; zinc-RING finger domain [PF14634.8, score=19.9]; RING-type zinc-finger [PF13445.8, score=19.1]} {Human: ENSG00000177479, ARIH2, ariadne RBR E3 ubiquitin protein ligase 2, [Score=315, Expect=1e-102]} {Mouse: ENSMUSG00000064145, Arih2, ariadne RBR E3 ubiquitin protein ligase 2, [Score=313, Expect=2e-102]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=361, Expect=7e-121]} {Celegans: WBGene00020462, T12E12.1, Potential E3 ubiquitin-protein ligase ariadne-2, [Score=303, Expect=9e-99]} {Smed: dd_Smed_v6_7986_0_1, dd_Smed_v6_7986_0_1, [Score=317, Expect=1e-103]} {RNA1509_4785} {RNA1310_15084} {RNA815_5803}

Cumulative graph for MligTC455_19778

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.497 2.129 0.75761 1.00000
RegionR2 -1.484 2.129 0.99660 1.00000
RegionR3 -0.07 2.129 0.87926 1.00000
RegionR4 3.409 2.129 0.00151 0.01435
RegionR5 0.933 2.129 0.33569 0.68165
RegionR6 0.556 2.129 0.59602 1.00000
RegionR7 -1.226 2.129 0.99424 1.00000
RegionR8 -0.621 2.129 0.97283 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.676 2.129 0.52808 1.00000
RegenerationR2 0.334 2.129 0.59901 0.91540
RegenerationR3 -0.516 2.129 0.48761 0.85361
RegenerationR4 -1.142 2.129 0.11639 0.52122
RegenerationR5 0.371 2.129 0.56811 0.89534
RegenerationR6 0.158 2.129 0.83548 0.99363
RegenerationBL 0.358 2.129 0.76500 1.00000
RegenerationTP 0.889 2.129 0.52952 0.92001


Genes with expression patterns similar to MligTC455_19778

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_19778 115 2.41 Mlig455_043422

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.387

Region-enriched R4: 3.409/0.01435

 ARIH2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_043422 {REF} {Length: 3573} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=61.2]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.2]; zinc-RING finger domain [PF14634.8, score=19.9]; RING-type zinc-finger [PF13445.8, score=19.1]} {Human: ENSG00000177479, ARIH2, ariadne RBR E3 ubiquitin protein ligase 2, [Score=315, Expect=1e-102]} {Mouse: ENSMUSG00000064145, Arih2, ariadne RBR E3 ubiquitin protein ligase 2, [Score=313, Expect=2e-102]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=361, Expect=7e-121]} {Celegans: WBGene00020462, T12E12.1, Potential E3 ubiquitin-protein ligase ariadne-2, [Score=303, Expect=9e-99]} {Smed: dd_Smed_v6_7986_0_1, dd_Smed_v6_7986_0_1, [Score=317, Expect=1e-103]} {RNA1509_4785} {RNA1310_15084} {RNA815_5803}
2. MligTC455_50175 681 14.19 Mlig455_049630

Neo: -

Age: -

 TEX261 2.539 - - - 0.823 0.972 0.744 Mlig455_049630 {REF} {Length: 2273} {TRANSSPLICED} {Pfam: Transmembrane adaptor Erv26 [PF04148.15, score=124.9]} {Human: ENSG00000144043, TEX261, testis expressed 261, [Score=150, Expect=3e-45]} {Mouse: ENSMUSG00000014748, Tex261, testis expressed gene 261, [Score=150, Expect=1e-45]} {Dmel: FBgn0034849, CG3500, [Score=119, Expect=2e-33]} {Smed: dd_Smed_v6_10021_0_1, dd_Smed_v6_10021_0_1, [Score=117, Expect=1e-32]} {RNA1509_45542} {RNA1310_11823, RNA1509_45542} {RNA1509_45542, RNA815_17541.1}
3. MligTC455_17164 394 8.21 Mlig455_026943

Neo: -

Age: -

Region-enriched R5: 2.625/0.00000
Region-enriched R4: 1.919/0.02682

 0.982 - - - 0.982 - - Mlig455_026943 {REF} {Length: 823} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4602) [PF15375.8, score=32.1]} {RNA1509_32047} {RNA1310_28737} {RNA815_21518}
4. MligTC455_45549 438 9.13 Mlig455_034509

Neo: Irradiation

Age: logFC(26M/2M)=-0.361

Region-enriched R4: 3.487/0.00236
Region-enriched R6: 3.106/0.01222

 0.971 0.971 - - - - - Mlig455_034509 {REF} {Length: 3881} {Pfam: Innexin [PF00876.20, score=293.1]} {Dmel: FBgn0085387, shakB, shaking B, [Score=84.3, Expect=2e-17]} {Celegans: WBGene00006749, unc-9, Innexin unc-9, [Score=193, Expect=2e-56]} {Smed: dd_Smed_v6_692_0_1, dd_Smed_v6_692_0_1, [Score=303, Expect=2e-98]} {RNA1509_10127, RNA1509_11440, RNA1509_54647} {RNA1310_10434, RNA1509_10127, RNA1509_11440, RNA1509_54647} {RNA1509_10127, RNA1509_11440, RNA1509_54647, RNA815_3577}
5. MligTC455_44450 368 7.66 Mlig455_060096, Mlig455_060128

Neo: -

Age: Up-Down-Up

Region-enriched R4: 4.196/0.00445

 0.966 0.966 - - - - -

Mlig455_060096 {REF} {Length: 321} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_12491} {RNA1310_58880} {RNA815_26602}

Mlig455_060128 {REF} {Length: 410} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4499) [PF14934.8, score=19.3]} {RNA1509_12491} {RNA1310_58880} {RNA815_26602}
6. MligTC455_49013 277 5.78 Mlig455_006233

Neo: -

Age: Down-Up-Down

 UBL3 0.964 0.964 - - - - - Mlig455_006233 {REF} {Length: 2378} {TRANSSPLICED} {Pfam: Ubiquitin-2 like Rad60 SUMO-like [PF13881.8, score=87.5]; Ubiquitin family [PF00240.25, score=19.0]} {Human: ENSG00000122042, UBL3, ubiquitin like 3, [RH, Score=150, Expect=2e-47]} {Mouse: ENSMUSG00000001687, Ubl3, ubiquitin-like 3, [RH, Score=149, Expect=3e-47]} {Dmel: FBgn0026076, UBL3, Ubiquitin like 3, [RH, Score=145, Expect=1e-42]} {Celegans: WBGene00008121, C46F11.6, Ubiquitin-like protein, [Score=114, Expect=2e-33]} {Smed: dd_Smed_v6_10574_0_1, dd_Smed_v6_10574_0_1, [Score=107, Expect=7e-31]} {RNA1509_29746} {RNA1310_56429} {RNA815_28925}
7. MligTC455_52313 53 1.1 Mlig455_036461

Neo: -

Age: -

 0.963 0.963 - - - - - Mlig455_036461 {REF} {Length: 242} {NoTransDecoderORF} {RNA1509_5075}
8. MligTC455_17963 584 12.16 Mlig455_049086

Neo: -

Age: Down-Up-Down

Region-enriched R4: 1.446/0.04930

 ABCG2 0.961 0.961 - - - - - Mlig455_049086 {REF} {Length: 3159} {Pfam: ABC-2 type transporter [PF01061.26, score=135.0]; ABC transporter [PF00005.29, score=78.2]; ABC-2 type transporter [PF19055.2, score=69.9]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=34.8]; RecF/RecN/SMC N terminal domain [PF02463.21, score=26.0]; AAA domain [PF13476.8, score=20.8]; ABC-2 family transporter protein [PF12698.9, score=19.8]} {Human: ENSG00000118777, ABCG2, ATP binding cassette subfamily G member 2 (Junior blood group), [RH, Score=595, Expect=0.0]} {Mouse: ENSMUSG00000029802, Abcg2, ATP binding cassette subfamily G member 2 (Junior blood group), [RH, Score=583, Expect=0.0]} {Dmel: FBgn0003996, w, white, [RH, Score=284, Expect=4e-86]} {Celegans: WBGene00012925, wht-8, WHiTe (Drosophila) related ABC transporter, [RH, Score=262, Expect=8e-79]} {Smed: dd_Smed_v6_4225_0_1, dd_Smed_v6_4225_0_1, [Score=553, Expect=0.0]} {RNA1509_28179, RNA1509_9773} {RNA1310_7804.1, RNA1509_28179, RNA1509_9773} {RNA1509_28179, RNA1509_9773, RNA815_3051}
9. MligTC455_19212 100 2.09 Mlig455_053588

Neo: -

Age: -

 0.956 0.956 - - - - - Mlig455_053588 {REF} {Length: 1342} {Celegans: WBGene00019180, H10D18.5, [RH, Score=62.8, Expect=5e-11]} {Smed: dd_Smed_v6_10251_0_1, dd_Smed_v6_10251_0_1, [RH, Score=95.5, Expect=3e-23]} {RNA1310_25906} {RNA815_14581.1}
10. MligTC455_29766 175 3.64 Mlig455_037897

Neo: -

Age: -

 MAP3K19 0.954 - - 0.954 - - - Mlig455_037897 {REF} {Length: 3898} {Pfam: Protein kinase domain [PF00069.27, score=188.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=135.1]; Ankyrin repeats (many copies) [PF13637.8, score=127.4]; Ankyrin repeats (3 copies) [PF12796.9, score=106.1]; Ankyrin repeats (many copies) [PF13857.8, score=78.4]; Ankyrin repeat [PF13606.8, score=47.9]; Ankyrin repeat [PF00023.32, score=33.5]; Fungal protein kinase [PF17667.3, score=25.1]; ABC1 atypical kinase-like domain [PF03109.18, score=23.4]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=159, Expect=6e-41]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=158, Expect=9e-41]} {Dmel: FBgn0266465, GckIII, Germinal centre kinase III, [Score=142, Expect=7e-35]} {Celegans: WBGene00001526, gck-1, Germinal center kinase 1, [Score=131, Expect=1e-31]} {Smed: dd_Smed_v6_2030_0_16, dd_Smed_v6_2030_0_16, [Score=140, Expect=1e-35]} {RNA1509_45037} {RNA1310_17852.1} {RNA815_5323.2}
11. MligTC455_12731 331 6.89 Mlig455_005108

Neo: -

Age: -

Region-enriched R6: 3.150/0.01756

 0.953 0.953 - - - - - Mlig455_005108 {REF} {Length: 654} {NoTransDecoderORF} {RNA1509_44841} {RNA1310_66981} {RNA815_54535}
12. MligTC455_14038 196 4.08 Mlig455_069252

Neo: -

Age: logFC(26M/2M)=-0.497

 0.952 0.952 - - - - - Mlig455_069252 {REF} {Length: 1750} {RNA1509_33444} {RNA1310_16640} {RNA815_5282}
13. MligTC455_23892 62 1.3 Mlig455_011973

Neo: -

Age: -

 0.952 0.952 - - - - - Mlig455_011973 {REF} {Length: 438} {TRANSSPLICED} {RNA1509_37276} {RNA1310_21339} {RNA815_12138.1}
14. MligTC455_50088 774 16.13 Mlig455_011126

Neo: -

Age: -

 PEX19 0.952 - - - - 0.952 - Mlig455_011126 {REF} {Length: 3752} {TRANSSPLICED} {Pfam: Pex19 protein family [PF04614.14, score=110.6]} {Human: ENSG00000162735, PEX19, peroxisomal biogenesis factor 19, [RH, Score=86.7, Expect=1e-18]; ENSG00000258465, AL139011.2, novel protein, [RH, Score=85.5, Expect=3e-18]} {Mouse: ENSMUSG00000003464, Pex19, peroxisomal biogenesis factor 19, [RH, Score=83.2, Expect=1e-17]} {Dmel: FBgn0032407, Pex19, Peroxin 19, [RH, Score=66.2, Expect=6e-12]} {Celegans: WBGene00004201, prx-19, Putative peroxisomal biogenesis factor 19, [RH, Score=82.4, Expect=1e-17]} {RNA1509_18112, RNA1509_20172, RNA1509_34909, RNA1509_36633, RNA1509_49483} {RNA1310_14824, RNA1509_18112, RNA1509_20172, RNA1509_34909, RNA1509_36633, RNA1509_49483} {RNA1509_18112, RNA1509_20172, RNA1509_34909, RNA1509_36633, RNA1509_49483, RNA815_10570}
15. MligTC455_53088 804 16.74 Mlig455_054521, Mlig455_055377, Mlig455_055451

Neo: -

Age: -

 TPRG1L 0.95 0.950 - - - - -

Mlig455_054521 {REF} {Length: 1274} {TRANSSPLICED} {Pfam: Inositol phosphatase [PF12456.10, score=32.3]} {Human: ENSG00000158109, TPRG1L, tumor protein p63 regulated 1 like, [Score=62.8, Expect=3e-11]} {Mouse: ENSMUSG00000029030, Tprgl, transformation related protein 63 regulated like, [Score=65.9, Expect=1e-12]} {Smed: dd_Smed_v6_2044_0_1, dd_Smed_v6_2044_0_1, [Score=56.2, Expect=1e-09]} {RNA1509_7979} {RNA1310_8605} {RNA815_10846}

Mlig455_055377 {REF} {Length: 1261} {Pfam: Inositol phosphatase [PF12456.10, score=32.4]} {Human: ENSG00000158109, TPRG1L, tumor protein p63 regulated 1 like, [Score=61.2, Expect=8e-11]} {Mouse: ENSMUSG00000029030, Tprgl, transformation related protein 63 regulated like, [Score=63.9, Expect=6e-12]} {RNA1509_7979} {RNA1310_8605} {RNA815_10846}

Mlig455_055451 {REF} {Length: 1330} {TRANSSPLICED} {Pfam: Inositol phosphatase [PF12456.10, score=31.9]} {Human: ENSG00000158109, TPRG1L, tumor protein p63 regulated 1 like, [Score=68.9, Expect=2e-13]} {Mouse: ENSMUSG00000029030, Tprgl, transformation related protein 63 regulated like, [Score=71.2, Expect=2e-14]} {Smed: dd_Smed_v6_2044_0_1, dd_Smed_v6_2044_0_1, [Score=57.0, Expect=9e-10]} {RNA1509_40030} {RNA1310_8605} {RNA815_10846}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA