M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21183

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21183 113 2.35 Mlig455_002162

Neo: -

Age: -

Region-enriched R7: 2.794/0.01846

 Mlig455_002162 {REF} {Length: 4174} {RNA1509_21579} {RNA1310_1867.1} {RNA815_13517}

Cumulative graph for MligTC455_21183

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.123 1.881 0.63922 1.00000
RegionR2 0.314 1.881 0.75087 1.00000
RegionR3 -0.704 1.881 0.71589 1.00000
RegionR4 -0.528 1.881 0.78475 1.00000
RegionR5 -1.759 1.881 0.48566 0.84929
RegionR6 0.487 1.881 0.58588 1.00000
RegionR7 2.794 1.881 0.00044 0.01846
RegionR8 1.518 1.881 0.21378 0.81802

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.655 1.881 0.78681 1.00000
RegenerationR2 -1.088 1.881 0.15018 0.58326
RegenerationR3 -0.241 1.881 0.78277 0.97637
RegenerationR4 -0.98 1.881 0.32467 0.76192
RegenerationR5 -0.23 1.881 0.80226 0.98899
RegenerationR6 -1.042 1.881 0.21306 0.55681
RegenerationBL -5.417 1.881 0.00206 0.03684
RegenerationTP -3.196 1.881 0.00620 0.13190


Genes with expression patterns similar to MligTC455_21183

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21183 113 2.35 Mlig455_002162

Neo: -

Age: -

Region-enriched R7: 2.794/0.01846

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_002162 {REF} {Length: 4174} {RNA1509_21579} {RNA1310_1867.1} {RNA815_13517}
2. MligTC455_12988 77 1.61 Mlig455_034660

Neo: -

Age: -

 1.881 - - - 0.975 - 0.906 Mlig455_034660 {REF} {Length: 1932} {RNA1509_3330} {RNA1310_28670} {RNA815_4944.1}
3. MligTC455_44149 574 11.97 Mlig455_025863, Mlig455_025925

Neo: -

Age: -

 PCM1 1.747 - - - - 0.790 0.957

Mlig455_025863 {REF} {Length: 4700} {TRANSSPLICED} {Pfam: Pericentriolar material 1 C terminus [PF15717.7, score=208.2]} {Human: ENSG00000078674, PCM1, pericentriolar material 1, [Score=200, Expect=5e-52]} {Mouse: ENSMUSG00000031592, Pcm1, pericentriolar material 1, [Score=199, Expect=9e-52]} {RNA1509_4175} {RNA1310_1887} {RNA815_3794.1}

Mlig455_025925 {REF} {Length: 4856} {TRANSSPLICED} {Pfam: Pericentriolar material 1 C terminus [PF15717.7, score=206.3]} {Human: ENSG00000078674, PCM1, pericentriolar material 1, [Score=200, Expect=5e-52]} {Mouse: ENSMUSG00000031592, Pcm1, pericentriolar material 1, [Score=198, Expect=1e-51]} {RNA1509_4175} {RNA1310_1887, RNA1509_4175} {RNA1509_4175, RNA815_3794.1}
4. MligTC455_22567 154 3.2 Mlig455_006662

Neo: -

Age: Down-Up-Down

 TRPM3 0.974 - - - - 0.974 - Mlig455_006662 {REF} {Length: 5900} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=101.6]; Ankyrin repeats (3 copies) [PF12796.9, score=83.4]; Ankyrin repeats (many copies) [PF13857.8, score=57.5]; Ankyrin repeat [PF00023.32, score=54.5]; Ankyrin repeat [PF13606.8, score=53.6]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=108, Expect=6e-23]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=107, Expect=9e-23]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=107, Expect=4e-23]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=60.5, Expect=1e-08]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=118, Expect=1e-26]} {RNA1509_12598} {RNA1310_943.1, RNA1509_12598} {RNA1509_12598, RNA815_2516.1}
5. MligTC455_12352 112 2.34 Mlig455_046564

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_046564 {REF} {Length: 748} {TRANSSPLICED} {RNA1310_57252}
6. MligTC455_44893 215 4.47 Mlig455_020672

Neo: Irradiation

Age: -

 SMARCC2 0.967 - - - 0.967 - - Mlig455_020672 {REF} {Length: 2246} {TRANSSPLICED} {Pfam: SWIRM domain [PF04433.19, score=107.7]; SWIRM-associated region 1 [PF16495.7, score=79.7]; SWIRM-associated domain at the C-terminal [PF16498.7, score=49.2]; Myb-like DNA-binding domain [PF00249.33, score=42.7]; Myb-like DNA-binding domain [PF13921.8, score=28.7]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [RH, Score=450, Expect=3e-144]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [RH, Score=451, Expect=8e-146]} {Dmel: FBgn0002783, mor, moira, [RH, Score=339, Expect=3e-103]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [RH, Score=331, Expect=1e-103]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [RH, Score=405, Expect=2e-127]} {RNA1509_39768, RNA1509_54926} {RNA1310_5494.1, RNA1509_39768, RNA1509_54926} {RNA1509_39768, RNA1509_54926, RNA815_8217}
7. MligTC455_37760 15 0.3 Mlig455_014788

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_014788 {REF} {Length: 2694} {Pfam: CUB domain [PF00431.22, score=48.3]} {RNA1310_77188}
8. MligTC455_28236 57 1.19 Mlig455_006755, Mlig455_054681

Neo: -

Age: -

 0.962 - - - - 0.962 -

Mlig455_006755 {REF} {Length: 1436} {NoTransDecoderORF} {RNA1509_44500} {RNA1310_4439.1} {RNA815_12729}

Mlig455_054681 {REF} {Length: 1105} {NoTransDecoderORF} {RNA1509_2932} {RNA1310_4439.1} {RNA815_1450.1}
9. MligTC455_23938 109 2.26 Mlig455_044682

Neo: -

Age: logFC(26M/2M)=0.355

 TRPM3 0.958 - - - - 0.958 - Mlig455_044682 {REF} {Length: 6333} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=80.4]; Ankyrin repeats (3 copies) [PF12796.9, score=74.8]; Ankyrin repeat [PF13606.8, score=59.5]; Ion transport protein [PF00520.33, score=57.5]; Ankyrin repeat [PF00023.32, score=51.1]; Ankyrin repeats (many copies) [PF13857.8, score=38.9]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=139, Expect=2e-32]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=139, Expect=2e-32]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=139, Expect=2e-32]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=141, Expect=3e-33]; ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=140, Expect=4e-33]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=112, Expect=2e-24]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=111, Expect=2e-24]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=192, Expect=2e-49]} {RNA1509_19611, RNA1509_32799} {RNA1310_1742.1, RNA1509_19611, RNA1509_32799} {RNA1509_19611, RNA1509_32799, RNA815_1771}
10. MligTC455_51060 96 2 Mlig455_049902

Neo: -

Age: -

 ZAN 0.957 - - - - - 0.957 Mlig455_049902 {REF} {Length: 3471} {TRANSSPLICED} {Human: ENSG00000146839, ZAN, zonadhesin (gene/pseudogene), [Score=70.5, Expect=2e-11]} {Mouse: ENSMUSG00000052512, Nav2, neuron navigator 2, [Score=56.6, Expect=2e-07]} {RNA1509_16850} {RNA1310_5918.1} {RNA815_14679}
11. MligTC455_26830 80 1.67 Mlig455_027899

Neo: -

Age: Down-Down-Up

 CERS2 0.956 - - - - - 0.956 Mlig455_027899 {REF} {Length: 2795} {TRANSSPLICED} {Pfam: TLC domain [PF03798.18, score=134.0]} {Human: ENSG00000143418, CERS2, ceramide synthase 2, [Score=179, Expect=3e-52]; ENSG00000090661, CERS4, ceramide synthase 4, [Score=176, Expect=2e-51]} {Mouse: ENSMUSG00000015714, Cers2, ceramide synthase 2, [Score=184, Expect=2e-54]; ENSMUSG00000008206, Cers4, ceramide synthase 4, [Score=177, Expect=2e-51]} {Dmel: FBgn0040918, schlank, [Score=218, Expect=4e-67]} {Celegans: WBGene00002043, hyl-1, Ceramide synthase hyl-1, [Score=145, Expect=1e-40]} {Smed: dd_Smed_v6_4223_0_1, dd_Smed_v6_4223_0_1, [Score=197, Expect=5e-60]} {RNA1509_27797, RNA1509_33969, RNA1509_57917} {RNA1310_12471, RNA1509_33969, RNA1509_57917} {RNA1509_33969, RNA1509_57917, RNA815_4638}
12. MligTC455_49079 60 1.25 Mlig455_045399

Neo: -

Age: Up-Down-Up

 0.956 - - - - - 0.956 Mlig455_045399 {REF} {Length: 10967} {Pfam: Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=18.9]} {RNA1310_61236} {RNA815_36283}
13. MligTC455_26626 501 10.44 Mlig455_033419

Neo: -

Age: -

 CHMP7 0.955 - - - 0.955 - - Mlig455_033419 {REF} {Length: 2635} {TRANSSPLICED} {Pfam: Snf7 [PF03357.23, score=70.0]} {Human: ENSG00000147457, CHMP7, charged multivesicular body protein 7, [RH, Score=87.0, Expect=1e-17]} {Mouse: ENSMUSG00000034190, Chmp7, charged multivesicular body protein 7, [RH, Score=85.1, Expect=3e-17]} {Celegans: WBGene00011976, T24B8.2, [RH, Score=98.6, Expect=4e-22]} {Smed: dd_Smed_v6_7879_0_1, dd_Smed_v6_7879_0_1, [RH, Score=89.7, Expect=5e-20]} {RNA1509_16830, RNA1509_25675, RNA1509_29111, RNA1509_42888} {RNA1310_16436.1, RNA1509_16830, RNA1509_25675, RNA1509_29111, RNA1509_42888} {RNA1509_16830, RNA1509_25675, RNA1509_29111, RNA1509_42888, RNA815_6674.1}
14. MligTC455_35276 20 0.41 Mlig455_026610, Mlig455_042800

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_026610 {REF} {Length: 2086} {RNA1310_18660} {RNA815_15449}

Mlig455_042800 {REF} {Length: 2333} {RNA1310_18660} {RNA815_15449}
15. MligTC455_24945 1253 26.09 Mlig455_045575

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.320

 ABCA1 0.953 - - - - 0.953 - Mlig455_045575 {REF} {Length: 9233} {Pfam: ABC transporter [PF00005.29, score=176.2]; ABC-2 family transporter protein [PF12698.9, score=120.7]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=70.3]; RecF/RecN/SMC N terminal domain [PF02463.21, score=34.2]; AAA domain [PF13476.8, score=25.5]; AAA ATPase domain [PF13175.8, score=20.8]; RsgA GTPase [PF03193.18, score=20.5]; P-loop containing region of AAA domain [PF13555.8, score=20.1]; 50S ribosome-binding GTPase [PF01926.25, score=18.7]} {Human: ENSG00000165029, ABCA1, ATP binding cassette subfamily A member 1, [Score=646, Expect=0.0]} {Mouse: ENSMUSG00000015243, Abca1, ATP-binding cassette, sub-family A (ABC1), member 1, [Score=643, Expect=0.0]} {Dmel: FBgn0036747, CG6052, [Score=275, Expect=6e-74]} {Celegans: WBGene00000020, abt-2, ABC Transporter family, [Score=272, Expect=6e-73]} {Smed: dd_Smed_v6_2300_0_1, dd_Smed_v6_2300_0_1, [Score=639, Expect=0.0]} {RNA1509_16622, RNA1509_22292, RNA1509_2233, RNA1509_58172} {RNA1310_344, RNA1509_16622, RNA1509_22292, RNA1509_2233, RNA1509_58172} {RNA1509_16622, RNA1509_22292, RNA1509_2233, RNA1509_58172, RNA815_636}
16. MligTC455_15113 28 0.58 Mlig455_022691

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_022691 {REF} {Length: 1746} {Pfam: EGF-like domain [PF00008.29, score=20.4]} {RNA1310_74350} {RNA815_53456}
17. MligTC455_24787 87 1.82 Mlig455_065253

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_065253 {REF} {Length: 1051} {TRANSSPLICED} {RNA1509_24218} {RNA1310_25312.2} {RNA815_14520}
18. MligTC455_26840 353 7.36 Mlig455_020643

Neo: -

Age: -

 PIF1 0.95 - - - 0.950 - - Mlig455_020643 {REF} {Length: 12767} {Pfam: PIF1-like helicase [PF05970.16, score=324.2]; Helitron helicase-like domain at N-terminus [PF14214.8, score=197.6]; AAA domain [PF13604.8, score=47.7]; Helicase [PF02689.16, score=22.5]; UvrD-like helicase C-terminal domain [PF13538.8, score=20.0]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=96.7, Expect=1e-19]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=91.3, Expect=4e-18]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=90.1, Expect=7e-18]} {Celegans: WBGene00019136, F59H6.5, [RH, Score=778, Expect=0.0]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=105, Expect=8e-23]} {RNA1509_48797} {RNA1310_4110} {RNA815_358.1}
19. MligTC455_46276 55 1.14 Mlig455_023064, Mlig455_023066

Neo: -

Age: logFC(26M/2M)=-0.507

 0.95 - - - - - 0.950

Mlig455_023064 {REF} {Length: 3069} {TRANSSPLICED} {Pfam: SH3 domain [PF00018.30, score=22.7]} {RNA1509_53700} {RNA1310_6669} {RNA815_37465}

Mlig455_023066 {REF} {Length: 4408} {Pfam: SH3 domain [PF00018.30, score=22.7]} {RNA1509_53700} {RNA1310_6669} {RNA815_37465}
20. MligTC455_52708 2548 53.08 Mlig455_033971

Neo: -

Age: -

Region-specific R2: 1.697

Region-enriched R2: 1.605/0.00000

 CROCC 0.95 - - - - 0.950 - Mlig455_033971 {REF} {Length: 8201} {TRANSSPLICED} {Pfam: Ciliary rootlet component, centrosome cohesion [PF15035.8, score=206.8]; Septation ring formation regulator, EzrA [PF06160.14, score=19.8]} {Human: ENSG00000058453, CROCC, ciliary rootlet coiled-coil, rootletin, [Score=885, Expect=0.0]} {Mouse: ENSMUSG00000040860, Crocc, ciliary rootlet coiled-coil, rootletin, [Score=889, Expect=0.0]} {Dmel: FBgn0039152, Root, Rootletin, [Score=372, Expect=1e-103]} {Celegans: WBGene00022500, lfi-1, Lin-5 (Five) Interacting protein, [RH, Score=167, Expect=7e-41]} {Smed: dd_Smed_v6_1404_0_1, dd_Smed_v6_1404_0_1, [RH, Score=1909, Expect=0.0]} {RNA1509_137} {RNA1310_2877.1} {RNA815_204}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA