M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44149

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44149 574 11.97 Mlig455_025863, Mlig455_025925

Neo: -

Age: -

 PCM1

Mlig455_025863 {REF} {Length: 4700} {TRANSSPLICED} {Pfam: Pericentriolar material 1 C terminus [PF15717.7, score=208.2]} {Human: ENSG00000078674, PCM1, pericentriolar material 1, [Score=200, Expect=5e-52]} {Mouse: ENSMUSG00000031592, Pcm1, pericentriolar material 1, [Score=199, Expect=9e-52]} {RNA1509_4175} {RNA1310_1887} {RNA815_3794.1}

Mlig455_025925 {REF} {Length: 4856} {TRANSSPLICED} {Pfam: Pericentriolar material 1 C terminus [PF15717.7, score=206.3]} {Human: ENSG00000078674, PCM1, pericentriolar material 1, [Score=200, Expect=5e-52]} {Mouse: ENSMUSG00000031592, Pcm1, pericentriolar material 1, [Score=198, Expect=1e-51]} {RNA1509_4175} {RNA1310_1887, RNA1509_4175} {RNA1509_4175, RNA815_3794.1}

Cumulative graph for MligTC455_44149

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.067 3.963 0.96222 1.00000
RegionR2 0.627 3.963 0.30780 0.69877
RegionR3 -0.303 3.963 0.52270 1.00000
RegionR4 0.472 3.963 0.45386 0.78259
RegionR5 -0.694 3.963 0.11362 0.33302
RegionR6 -0.807 3.963 0.09925 0.57873
RegionR7 0.251 3.963 0.65319 1.00000
RegionR8 0.386 3.963 0.53954 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.039 3.963 0.36317 1.00000
RegenerationR2 0.038 3.963 0.93098 1.00000
RegenerationR3 0.264 3.963 0.64432 0.92654
RegenerationR4 -0.639 3.963 0.31231 0.75196
RegenerationR5 0.267 3.963 0.62132 0.91932
RegenerationR6 0.654 3.963 0.26629 0.61604
RegenerationBL 0.427 3.963 0.53630 0.89575
RegenerationTP -0.876 3.963 0.21763 0.66091


Genes with expression patterns similar to MligTC455_44149

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44149 574 11.97 Mlig455_025863, Mlig455_025925

Neo: -

Age: -

 PCM1 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_025863 {REF} {Length: 4700} {TRANSSPLICED} {Pfam: Pericentriolar material 1 C terminus [PF15717.7, score=208.2]} {Human: ENSG00000078674, PCM1, pericentriolar material 1, [Score=200, Expect=5e-52]} {Mouse: ENSMUSG00000031592, Pcm1, pericentriolar material 1, [Score=199, Expect=9e-52]} {RNA1509_4175} {RNA1310_1887} {RNA815_3794.1}

Mlig455_025925 {REF} {Length: 4856} {TRANSSPLICED} {Pfam: Pericentriolar material 1 C terminus [PF15717.7, score=206.3]} {Human: ENSG00000078674, PCM1, pericentriolar material 1, [Score=200, Expect=5e-52]} {Mouse: ENSMUSG00000031592, Pcm1, pericentriolar material 1, [Score=198, Expect=1e-51]} {RNA1509_4175} {RNA1310_1887, RNA1509_4175} {RNA1509_4175, RNA815_3794.1}
2. MligTC455_47329 793 16.52 Mlig455_025847, Mlig455_025942

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.434

 DSTYK 1.818 - - 0.951 - 0.867 -

Mlig455_025847 {REF} {Length: 4190} {Pfam: Protein kinase domain [PF00069.27, score=136.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=120.6]; Dynamin family [PF00350.25, score=73.6]; 50S ribosome-binding GTPase [PF01926.25, score=31.7]; Elongation factor Tu GTP binding domain [PF00009.29, score=26.7]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.7]} {Human: ENSG00000133059, DSTYK, dual serine/threonine and tyrosine protein kinase, [Score=179, Expect=1e-45]} {Mouse: ENSMUSG00000042046, Dstyk, dual serine/threonine and tyrosine protein kinase, [Score=193, Expect=2e-50]} {Dmel: FBgn0266465, GckIII, Germinal centre kinase III, [Score=95.9, Expect=5e-20]} {Celegans: WBGene00013643, Y105C5A.24, [Score=100, Expect=9e-22]} {Smed: dd_Smed_v6_1371_0_1, dd_Smed_v6_1371_0_1, [RH, Score=401, Expect=6e-125]} {RNA1509_27256, RNA1509_31736} {RNA1310_3463.1, RNA1509_27256} {RNA1509_27256, RNA815_1104.1}

Mlig455_025942 {REF} {Length: 4065} {Pfam: Protein kinase domain [PF00069.27, score=135.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=121.1]; Dynamin family [PF00350.25, score=73.6]; 50S ribosome-binding GTPase [PF01926.25, score=31.7]; Elongation factor Tu GTP binding domain [PF00009.29, score=28.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.5]} {Human: ENSG00000133059, DSTYK, dual serine/threonine and tyrosine protein kinase, [Score=181, Expect=2e-46]} {Mouse: ENSMUSG00000042046, Dstyk, dual serine/threonine and tyrosine protein kinase, [Score=195, Expect=3e-51]} {Dmel: FBgn0266465, GckIII, Germinal centre kinase III, [Score=97.8, Expect=1e-20]} {Celegans: WBGene00013643, Y105C5A.24, [Score=99.8, Expect=1e-21]} {Smed: dd_Smed_v6_1371_0_1, dd_Smed_v6_1371_0_1, [RH, Score=397, Expect=2e-123]} {RNA1509_31736} {RNA1310_3463.1} {RNA815_1104.1}
3. MligTC455_34979 40 0.83 Mlig455_030454

Neo: -

Age: Down-Up-Up

 1.763 - - - 0.790 0.973 - Mlig455_030454 {REF} {Length: 2086} {Pfam: Glycosyltransferase family 92 [PF01697.29, score=90.9]} {Dmel: FBgn0030443, CG12715, [Score=94.0, Expect=2e-20]} {Celegans: WBGene00012941, Y47D3B.4, [Score=83.2, Expect=6e-17]} {Smed: dd_Smed_v6_5401_0_1, dd_Smed_v6_5401_0_1, [Score=89.7, Expect=3e-19]} {RNA1509_46243} {RNA1310_16643} {RNA815_4190.1}
4. MligTC455_21183 113 2.35 Mlig455_002162

Neo: -

Age: -

Region-enriched R7: 2.794/0.01846

 1.747 - - - - 0.790 0.957 Mlig455_002162 {REF} {Length: 4174} {RNA1509_21579} {RNA1310_1867.1} {RNA815_13517}
5. MligTC455_31840 149 3.11 Mlig455_015884

Neo: -

Age: -

 1.747 - - - - 0.951 0.796 Mlig455_015884 {REF} {Length: 3104} {RNA1509_19124} {RNA1310_1002.1} {RNA815_889}
6. MligTC455_44039 970 20.22 Mlig455_013757

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.503

 1.706 - - - - 0.755 0.951 Mlig455_013757 {REF} {Length: 2853} {TRANSSPLICED} {Pfam: Cell-cycle sustaining, positive selection, [PF12736.9, score=43.1]} {Dmel: FBgn0034408, sano, serrano, [RH, Score=58.5, Expect=1e-08]} {Smed: dd_Smed_v6_6823_0_1, dd_Smed_v6_6823_0_1, [RH, Score=320, Expect=1e-102]} {RNA1509_15728, RNA1509_34587, RNA1509_5893} {RNA1310_5703, RNA1509_15728, RNA1509_34587, RNA1509_5893} {RNA1509_15728, RNA1509_34587, RNA1509_5893, RNA815_1722.1}
7. MligTC455_40915 873 18.19 Mlig455_042099

Neo: -

Age: -

 SLC22A24 1.7 - - - - 0.746 0.954 Mlig455_042099 {REF} {Length: 4000} {Pfam: Sugar (and other) transporter [PF00083.26, score=102.5]; Major Facilitator Superfamily [PF07690.18, score=76.5]} {Human: ENSG00000197658, SLC22A24, solute carrier family 22 member 24, [Score=119, Expect=2e-27]; ENSG00000197901, SLC22A6, solute carrier family 22 member 6, [Score=115, Expect=1e-26]} {Mouse: ENSMUSG00000023828, Slc22a3, solute carrier family 22 (organic cation transporter), member 3, [Score=121, Expect=1e-28]} {Dmel: FBgn0039178, CG6356, [Score=127, Expect=1e-30]} {Celegans: WBGene00003842, oct-1, Organic cation transporter 1, [Score=125, Expect=5e-30]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=85.9, Expect=2e-17]} {RNA1509_14287, RNA1509_8510} {RNA1310_10700.1, RNA1509_14287, RNA1509_8510} {RNA1509_14287, RNA1509_8510, RNA815_2513}
8. MligTC455_16055 461 9.61 Mlig455_014262

Neo: -

Age: -

 PGS1 0.966 - - - - - 0.966 Mlig455_014262 {REF} {Length: 2189} {TRANSSPLICED} {Pfam: PLD-like domain [PF13091.8, score=54.1]; Phospholipase D Active site motif [PF00614.24, score=31.5]} {Human: ENSG00000087157, PGS1, phosphatidylglycerophosphate synthase 1, [RH, Score=275, Expect=4e-86]} {Mouse: ENSMUSG00000017715, Pgs1, phosphatidylglycerophosphate synthase 1, [RH, Score=272, Expect=4e-85]} {Dmel: FBgn0038649, CG7718, [RH, Score=282, Expect=8e-90]} {Celegans: WBGene00021677, pgs-1, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, [RH, Score=263, Expect=6e-83]} {Smed: dd_Smed_v6_2703_0_1, dd_Smed_v6_2703_0_1, [RH, Score=264, Expect=2e-83]} {RNA1509_24334} {RNA1310_17121, RNA1509_24334} {RNA1509_24334, RNA815_14063}
9. MligTC455_43101 1001 20.86 Mlig455_021715

Neo: -

Age: logFC(26M/2M)=0.827

 STK38L 0.964 - - - - - 0.964 Mlig455_021715 {REF} {Length: 3173} {Pfam: Protein kinase domain [PF00069.27, score=212.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=104.6]; ABC1 atypical kinase-like domain [PF03109.18, score=29.4]; Protein kinase C terminal domain [PF00433.26, score=24.2]; Kinase-like [PF14531.8, score=18.8]} {Human: ENSG00000211455, STK38L, serine/threonine kinase 38 like, [RH, Score=658, Expect=0.0]; ENSG00000112079, STK38, serine/threonine kinase 38, [RH, Score=649, Expect=0.0]} {Mouse: ENSMUSG00000001630, Stk38l, serine/threonine kinase 38 like, [RH, Score=666, Expect=0.0]; ENSMUSG00000024006, Stk38, serine/threonine kinase 38, [RH, Score=644, Expect=0.0]} {Dmel: FBgn0003744, trc, tricornered, [RH, Score=632, Expect=0.0]} {Celegans: WBGene00004727, sax-1, Serine/threonine-protein kinase sax-1, [RH, Score=585, Expect=0.0]} {Smed: dd_Smed_v6_6462_0_1, dd_Smed_v6_6462_0_1, [RH, Score=643, Expect=0.0]} {RNA1509_17327} {RNA1310_6212} {RNA815_1849.1}
10. MligTC455_11576 215 4.49 Mlig455_045740

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_045740 {REF} {Length: 672} {NoTransDecoderORF} {RNA1509_6409} {RNA1310_984} {RNA815_7594.1}
11. MligTC455_33212 61 1.27 Mlig455_003428

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_003428 {REF} {Length: 1700} {NoTransDecoderORF} {RNA1509_44389} {RNA1310_14765.1} {RNA815_7155}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA