M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21557

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21557 17 0.35 Mlig455_015278

Neo: -

Age: -

 Mlig455_015278 {REF} {Length: 738} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}

Cumulative graph for MligTC455_21557

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.192 0.702 0.99984 1.00000
RegionR2 4.978 0.702 0.99985 1.00000
RegionR3 0.967 0.702 0.99995 1.00000
RegionR4 -4.034 0.702 0.99984 1.00000
RegionR5 -0.586 0.702 0.99988 1.00000
RegionR6 1.021 0.702 1.00000 1.00000
RegionR7 1.128 0.702 0.99996 1.00000
RegionR8 1.718 0.702 0.99994 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.671 0.702 0.99996 1.00000
RegenerationR2 3.768 0.702 0.00461 0.10518
RegenerationR3 6.693 0.702 0.00038 0.02748
RegenerationR4 6.047 0.702 0.00082 0.03058
RegenerationR5 5.396 0.702 0.00035 0.02993
RegenerationR6 5.071 0.702 0.00612 0.09503
RegenerationBL 5.2 0.702 0.01370 0.12155
RegenerationTP 5.964 0.702 0.00687 0.13953


Genes with expression patterns similar to MligTC455_21557

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21557 17 0.35 Mlig455_015278

Neo: -

Age: -

 2 - - - - 1.000 1.000 Mlig455_015278 {REF} {Length: 738} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}
2. MligTC455_28278 110 2.28 Mlig455_018484

Neo: -

Age: -

 1.721 - - - - 0.767 0.954 Mlig455_018484 {REF} {Length: 1124} {NoTransDecoderORF} {RNA1509_35077} {RNA1310_17510.1} {RNA815_9674}
3. MligTC455_26668 406 8.46 Mlig455_011365

Neo: -

Age: -

Regeneration-upregulated BL: 6.270

Regeneration-enriched BL: 6.270

 1.699 - - - - 0.738 0.961 Mlig455_011365 {REF} {Length: 3699} {Pfam: Protein of unknown function (DUF1104) [PF06518.13, score=20.7]} {RNA1509_40399} {RNA1310_340.1} {RNA815_1857}
4. MligTC455_13583 31 0.64 Mlig455_052529, Mlig455_069099

Neo: -

Age: -

 0.981 - - - - 0.981 -

Mlig455_052529 {REF} {Length: 376} {NoTransDecoderORF} {RNA1310_49408} {RNA815_48802}

Mlig455_069099 {REF} {Length: 381} {NoTransDecoderORF} {RNA1310_49408} {RNA815_48802}
5. MligTC455_11444 25 0.53 Mlig455_066854

Neo: -

Age: -

 0.98 - - - - - 0.980 Mlig455_066854 {REF} {Length: 845} {NoTransDecoderORF} {RNA1310_141915}
6. MligTC455_02553 40 0.83 Mlig455_057382, Mlig455_057405

Neo: -

Age: Up-Down-Up

Region-enriched R2: 4.891/0.03381

 0.979 - - - - 0.979 -

Mlig455_057382 {REF} {Length: 445} {NoTransDecoderORF} {RNA1310_52629}

Mlig455_057405 {REF} {Length: 4885} {TRANSSPLICED} {Celegans: WBGene00012980, efhd-1, EF HanD calcium binding protein, [Score=46.2, Expect=8e-06]} {RNA1310_42652} {RNA815_37610}
7. MligTC455_42418 64 1.33 Mlig455_063557

Neo: -

Age: -

 SCNN1G 0.979 - - - - - 0.979 Mlig455_063557 {REF} {Length: 3686} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=197.1]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=75.5, Expect=1e-13]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=53.9, Expect=4e-07]; ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=52.0, Expect=1e-06]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=56.6, Expect=3e-08]} {Smed: dd_Smed_v6_18385_0_1, dd_Smed_v6_18385_0_1, [Score=318, Expect=6e-101]} {RNA1310_46167} {RNA815_32816}
8. MligTC455_32142 40 0.84 Mlig455_006350

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.521

 TRPM7 0.976 - - - - - 0.976 Mlig455_006350 {REF} {Length: 5802} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=55.9]; Ankyrin repeats (3 copies) [PF12796.9, score=45.8]; Ankyrin repeat [PF13606.8, score=32.5]; Ankyrin repeats (many copies) [PF13857.8, score=28.5]; Ankyrin repeat [PF00023.32, score=25.7]} {Human: ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=104, Expect=1e-21]; ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=102, Expect=6e-21]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=99.4, Expect=4e-20]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=99.4, Expect=3e-20]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=104, Expect=7e-22]; ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=103, Expect=1e-21]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=103, Expect=1e-21]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=92.4, Expect=2e-18]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=77.8, Expect=5e-14]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=120, Expect=1e-27]} {RNA1509_29775} {RNA1310_1317} {RNA815_8567}
9. MligTC455_14067 223 4.65 Mlig455_069308

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_069308 {REF} {Length: 1219} {NoTransDecoderORF}
10. MligTC455_50390 19 0.4 Mlig455_016912

Neo: -

Age: -

 CHRNA3 0.971 - - - - - 0.971 Mlig455_016912 {REF} {Length: 2944} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=242.1]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=157.8]} {Human: ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=326, Expect=7e-105]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=317, Expect=2e-101]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=317, Expect=2e-101]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=313, Expect=5e-100]} {Mouse: ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=320, Expect=8e-103]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=317, Expect=1e-101]; ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=315, Expect=2e-101]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=304, Expect=8e-97]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=347, Expect=1e-112]} {Celegans: WBGene00000060, acr-21, AcetylCholine Receptor, [RH, Score=307, Expect=1e-98]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [RH, Score=539, Expect=0.0]} {RNA1310_33221} {RNA815_23594.2}
11. MligTC455_36883 94 1.96 Mlig455_070966

Neo: -

Age: -

 0.967 - - - - - 0.967 Mlig455_070966 {REF} {Length: 3363} {TRANSSPLICED} {RNA1509_39805} {RNA1310_22118.2} {RNA815_10951.2}
12. MligTC455_14258 34 0.71 Mlig455_050333

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_050333 {REF} {Length: 1941} {RNA1310_29786} {RNA815_30669}
13. MligTC455_24621 43 0.9 Mlig455_034366

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_034366 {REF} {Length: 575} {NoTransDecoderORF}
14. MligTC455_49527 147 3.06 Mlig455_027843

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_027843 {REF} {Length: 1796} {RNA1509_15103} {RNA1310_101911} {RNA815_59080}
15. MligTC455_11319 34 0.7 Mlig455_054806

Neo: -

Age: -

 0.964 - - - - - 0.964 Mlig455_054806 {REF} {Length: 275} {NoTransDecoderORF}
16. MligTC455_21258 64 1.34 Mlig455_001143, Mlig455_001305

Neo: -

Age: -

 FOXD4 0.963 - - - - - 0.963

Mlig455_001143 {REF} {Length: 2344} {Pfam: Forkhead domain [PF00250.20, score=125.5]} {Human: ENSG00000170122, FOXD4, forkhead box D4, [RH, Score=197, Expect=1e-57]; ENSG00000187140, FOXD3, forkhead box D3, [RH, Score=196, Expect=6e-57]} {Mouse: ENSMUSG00000067261, Foxd3, forkhead box D3, [RH, Score=197, Expect=2e-57]; ENSMUSG00000116152, Foxd3, forkhead box D3, [RH, Score=197, Expect=2e-57]} {Dmel: FBgn0004896, fd59A, forkhead domain 59A, [RH, Score=210, Expect=8e-63]} {Celegans: WBGene00006853, unc-130, [RH, Score=207, Expect=4e-63]} {Smed: dd_Smed_v6_23249_0_1, dd_Smed_v6_23249_0_1, [RH, Score=223, Expect=2e-68]} {RNA1310_116948}

Mlig455_001305 {REF} {Length: 1757} {Pfam: Forkhead domain [PF00250.20, score=51.7]} {Human: ENSG00000170122, FOXD4, forkhead box D4, [Score=99.4, Expect=3e-22]; ENSG00000187140, FOXD3, forkhead box D3, [Score=96.3, Expect=5e-21]} {Mouse: ENSMUSG00000116152, Foxd3, forkhead box D3, [Score=96.7, Expect=2e-21]; ENSMUSG00000067261, Foxd3, forkhead box D3, [Score=96.7, Expect=2e-21]} {Dmel: FBgn0004896, fd59A, forkhead domain 59A, [Score=112, Expect=6e-27]} {Celegans: WBGene00006853, unc-130, [Score=115, Expect=7e-29]} {Smed: dd_Smed_v6_23249_0_1, dd_Smed_v6_23249_0_1, [Score=124, Expect=2e-31]} {RNA1310_116948}
17. MligTC455_38597 42 0.87 Mlig455_025025

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_025025 {REF} {Length: 836} {NoTransDecoderORF} {RNA1509_21228} {RNA1310_9218} {RNA815_7856.3}
18. MligTC455_14531 41 0.86 Mlig455_064164

Neo: -

Age: Up-Down-Up

 RASEF 0.96 - - - - - 0.960 Mlig455_064164 {REF} {Length: 2737} {Pfam: Ras family [PF00071.24, score=148.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=96.7]; ADP-ribosylation factor family [PF00025.23, score=52.8]; EF-hand domain [PF13405.8, score=34.2]; EF hand [PF00036.34, score=33.1]; EF-hand domain pair [PF13499.8, score=31.0]; 50S ribosome-binding GTPase [PF01926.25, score=23.4]; Elongation factor Tu GTP binding domain [PF00009.29, score=22.9]; EF hand [PF13202.8, score=20.1]; EF-hand domain pair [PF13833.8, score=18.8]} {Human: ENSG00000165105, RASEF, RAS and EF-hand domain containing, [Score=174, Expect=3e-45]; ENSG00000130038, CRACR2A, calcium release activated channel regulator 2A, [Score=171, Expect=5e-44]} {Mouse: ENSMUSG00000043003, Rasef, RAS and EF hand domain containing, [Score=181, Expect=4e-48]} {Dmel: FBgn0005586, Rab3, [Score=130, Expect=3e-34]} {Celegans: WBGene00016344, rsef-1, Ras and EF-hand domain-containing protein homolog, [Score=174, Expect=6e-46]} {Smed: dd_Smed_v6_4284_0_1, dd_Smed_v6_4284_0_1, [Score=244, Expect=4e-70]} {RNA1310_63313}
19. MligTC455_41760 52 1.09 Mlig455_046852

Neo: -

Age: -

 0.96 - - - - - 0.960 Mlig455_046852 {REF} {Length: 2522} {NoTransDecoderORF} {RNA1509_32404} {RNA1310_58903} {RNA815_47584}
20. MligTC455_49308 26 0.55 Mlig455_055283

Neo: -

Age: -

 ZAN 0.959 - - - - - 0.959 Mlig455_055283 {REF} {Length: 2486} {Pfam: Glycine rich protein [PF12810.9, score=31.8]} {Human: ENSG00000146839, ZAN, zonadhesin (gene/pseudogene), [Score=65.1, Expect=4e-10]} {Mouse: ENSMUSG00000079173, Zan, zonadhesin, [Score=61.6, Expect=3e-09]} {Dmel: FBgn0053196, dpy, dumpy, [Score=51.6, Expect=3e-06]} {RNA1310_18897} {RNA815_40026}
21. MligTC455_28153 87 1.82 Mlig455_023355

Neo: -

Age: Down-Up-Down

 0.958 - - - - - 0.958 Mlig455_023355 {REF} {Length: 2641} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=23.0]} {RNA1509_36436} {RNA1310_24275.2} {RNA815_11419.1}
22. MligTC455_06814 49 1.02 Mlig455_046899

Neo: -

Age: -

 0.956 - - - - - 0.956 Mlig455_046899 {REF} {Length: 337}
23. MligTC455_01654 34 0.71 Mlig455_025189

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_025189 {REF} {Length: 577} {NoTransDecoderORF} {RNA1509_16128} {RNA1310_76847} {RNA815_29511.2}
24. MligTC455_09094 56 1.16 Mlig455_013381

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_013381 {REF} {Length: 506} {NoTransDecoderORF} {RNA1310_99945}
25. MligTC455_18401 44 0.92 Mlig455_060625

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_060625 {REF} {Length: 2190} {NoTransDecoderORF} {RNA1509_38113} {RNA1310_33283} {RNA815_55541}
26. MligTC455_18942 304 6.33 Mlig455_010489, Mlig455_061891

Neo: -

Age: -

Region-enriched R4: 2.841/0.02022

 0.953 - - - - - 0.953

Mlig455_010489 {REF} {Length: 925} {NoTransDecoderORF} {RNA1310_38724.1} {RNA815_50423}

Mlig455_061891 {REF} {Length: 1013} {NoTransDecoderORF} {RNA1310_38724.1} {RNA815_50423}
27. MligTC455_08599 133 2.76 Mlig455_004269, Mlig455_004339

Neo: -

Age: -

 0.952 - - - - - 0.952

Mlig455_004269 {REF} {Length: 1241} {NoTransDecoderORF}

Mlig455_004339 {REF} {Length: 1394} {NoTransDecoderORF}
28. MligTC455_16579 192 4 Mlig455_002494

Neo: -

Age: logFC(26M/2M)=0.292

 0.952 - - - - - 0.952 Mlig455_002494 {REF} {Length: 4108} {Mouse: ENSMUSG00000020154, Ptprb, protein tyrosine phosphatase, receptor type, B, [Score=55.8, Expect=3e-07]} {RNA1509_28509} {RNA1310_14831.1} {RNA815_5519.1}
29. MligTC455_08216 34 0.7 Mlig455_009138

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_009138 {REF} {Length: 379} {NoTransDecoderORF} {RNA1310_66482.1} {RNA815_62564}
30. MligTC455_29937 75 1.55 Mlig455_053384

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_053384 {REF} {Length: 3610} {NoTransDecoderORF} {RNA1509_57191} {RNA1310_45092} {RNA815_10095.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA