M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22100

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22100 400 8.34 Mlig455_041706, Mlig455_042259

Neo: -

Age: logFC(26M/2M)=0.258

Region-enriched R6: 2.129/0.03684

 ECE2

Mlig455_041706 {REF} {Length: 2895} {Pfam: Peptidase family M13 [PF01431.23, score=57.4]} {Human: ENSG00000145194, ECE2, endothelin converting enzyme 2, [Score=72.4, Expect=2e-12]; ENSG00000284917, EEF1AKMT4-ECE2, EEF1AKMT4-ECE2 readthrough, [Score=71.6, Expect=3e-12]} {Mouse: ENSMUSG00000115293, Gm49333, predicted gene, 49333, [Score=69.7, Expect=9e-12]; ENSMUSG00000022842, Ece2, endothelin converting enzyme 2, [Score=69.7, Expect=9e-12]} {Dmel: FBgn0031081, Nep3, Neprilysin 3, [Score=62.4, Expect=1e-09]} {Celegans: WBGene00014171, nep-26, NEPrilysin metallopeptidase family, [Score=50.1, Expect=5e-06]} {RNA1509_20201} {RNA1310_6902} {RNA815_3882}

Mlig455_042259 {REF} {Length: 2807} {Pfam: Peptidase family M13 [PF01431.23, score=57.4]} {Human: ENSG00000145194, ECE2, endothelin converting enzyme 2, [Score=76.3, Expect=1e-13]; ENSG00000284917, EEF1AKMT4-ECE2, EEF1AKMT4-ECE2 readthrough, [Score=75.5, Expect=2e-13]} {Mouse: ENSMUSG00000115293, Gm49333, predicted gene, 49333, [Score=73.6, Expect=6e-13]; ENSMUSG00000022842, Ece2, endothelin converting enzyme 2, [Score=73.6, Expect=5e-13]} {Dmel: FBgn0031081, Nep3, Neprilysin 3, [Score=63.2, Expect=7e-10]} {Celegans: WBGene00014171, nep-26, NEPrilysin metallopeptidase family, [Score=51.6, Expect=2e-06]} {RNA1509_20201} {RNA1310_6902, RNA1509_20201} {RNA1509_20201, RNA815_3882}

Cumulative graph for MligTC455_22100

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -7.781 3.567 0.01590 0.35569
RegionR2 1.853 3.567 0.03324 0.20808
RegionR3 0.807 3.567 0.36038 0.89573
RegionR4 -0.842 3.567 0.98017 1.00000
RegionR5 -0.21 3.567 0.90873 1.00000
RegionR6 2.129 3.567 0.00093 0.03684
RegionR7 2.359 3.567 0.00201 0.05673
RegionR8 1.685 3.567 0.13659 0.67592

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.707 3.567 0.99988 1.00000
RegenerationR2 -0.104 3.567 0.83601 0.99967
RegenerationR3 0.348 3.567 0.56509 0.89158
RegenerationR4 0.481 3.567 0.41574 0.82371
RegenerationR5 0.267 3.567 0.64149 0.92756
RegenerationR6 -0.84 3.567 0.12705 0.43844
RegenerationBL -1.032 3.567 0.14018 0.44620
RegenerationTP -1.001 3.567 0.20277 0.64418


Genes with expression patterns similar to MligTC455_22100

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22100 400 8.34 Mlig455_041706, Mlig455_042259

Neo: -

Age: logFC(26M/2M)=0.258

Region-enriched R6: 2.129/0.03684

 ECE2 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_041706 {REF} {Length: 2895} {Pfam: Peptidase family M13 [PF01431.23, score=57.4]} {Human: ENSG00000145194, ECE2, endothelin converting enzyme 2, [Score=72.4, Expect=2e-12]; ENSG00000284917, EEF1AKMT4-ECE2, EEF1AKMT4-ECE2 readthrough, [Score=71.6, Expect=3e-12]} {Mouse: ENSMUSG00000115293, Gm49333, predicted gene, 49333, [Score=69.7, Expect=9e-12]; ENSMUSG00000022842, Ece2, endothelin converting enzyme 2, [Score=69.7, Expect=9e-12]} {Dmel: FBgn0031081, Nep3, Neprilysin 3, [Score=62.4, Expect=1e-09]} {Celegans: WBGene00014171, nep-26, NEPrilysin metallopeptidase family, [Score=50.1, Expect=5e-06]} {RNA1509_20201} {RNA1310_6902} {RNA815_3882}

Mlig455_042259 {REF} {Length: 2807} {Pfam: Peptidase family M13 [PF01431.23, score=57.4]} {Human: ENSG00000145194, ECE2, endothelin converting enzyme 2, [Score=76.3, Expect=1e-13]; ENSG00000284917, EEF1AKMT4-ECE2, EEF1AKMT4-ECE2 readthrough, [Score=75.5, Expect=2e-13]} {Mouse: ENSMUSG00000115293, Gm49333, predicted gene, 49333, [Score=73.6, Expect=6e-13]; ENSMUSG00000022842, Ece2, endothelin converting enzyme 2, [Score=73.6, Expect=5e-13]} {Dmel: FBgn0031081, Nep3, Neprilysin 3, [Score=63.2, Expect=7e-10]} {Celegans: WBGene00014171, nep-26, NEPrilysin metallopeptidase family, [Score=51.6, Expect=2e-06]} {RNA1509_20201} {RNA1310_6902, RNA1509_20201} {RNA1509_20201, RNA815_3882}
2. MligTC455_23670 661 13.78 Mlig455_003202

Neo: Irradiation

Age: -

 XRN2 0.967 - - - - 0.967 - Mlig455_003202 {REF} {Length: 3715} {TRANSSPLICED} {Pfam: Xrn1 helical domain [PF17846.3, score=514.1]; XRN 5'-3' exonuclease N-terminus [PF03159.20, score=336.1]} {Human: ENSG00000088930, XRN2, 5'-3' exoribonuclease 2, [RH, Score=951, Expect=0.0]} {Mouse: ENSMUSG00000027433, Xrn2, 5'-3' exoribonuclease 2, [RH, Score=946, Expect=0.0]} {Dmel: FBgn0031868, Rat1, Rat1 5'-3' exoribonuclease, [RH, Score=884, Expect=0.0]} {Celegans: WBGene00006964, xrn-2, 5'-3' exoribonuclease 2 homolog, [RH, Score=902, Expect=0.0]} {Smed: dd_Smed_v6_3463_0_1, dd_Smed_v6_3463_0_1, [RH, Score=964, Expect=0.0]} {RNA1509_1472, RNA1509_22392} {RNA1310_2139.1, RNA1509_22392} {RNA1509_22392, RNA815_2958}
3. MligTC455_29402 182 3.79 Mlig455_063253

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.319

 PSD3 0.96 - - - - 0.960 - Mlig455_063253 {REF} {Length: 5600} {Pfam: Sec7 domain [PF01369.22, score=124.2]; Pleckstrin homology domain [PF15410.8, score=93.2]; PH domain [PF00169.31, score=40.2]} {Human: ENSG00000156011, PSD3, pleckstrin and Sec7 domain containing 3, [RH, Score=266, Expect=4e-77]} {Mouse: ENSMUSG00000030465, Psd3, pleckstrin and Sec7 domain containing 3, [RH, Score=263, Expect=4e-80]} {Dmel: FBgn0051158, Efa6, Exchange factor for Arf 6, [RH, Score=326, Expect=6e-97]} {Celegans: WBGene00013223, efa-6, Exchange factor for Arf-6, [Score=234, Expect=3e-68]} {Smed: dd_Smed_v6_9018_0_1, dd_Smed_v6_9018_0_1, [RH, Score=231, Expect=4e-65]} {RNA1509_37014, RNA1509_42489} {RNA1310_9417, RNA1509_37014, RNA1509_42489} {RNA1509_37014, RNA1509_42489, RNA815_7053}
4. MligTC455_44475 2592 54 Mlig455_006353, Mlig455_006402

Neo: Int S/G2/M

Age: -

Regeneration-upregulated BL: 1.652

Regeneration-enriched BL: 1.652

 PLRG1 0.959 - - - - 0.959 -

Mlig455_006353 {REF} {Length: 1600} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=150.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=34.0]; Nup133 N terminal like [PF08801.13, score=20.1]; Ciliary BBSome complex subunit 2, middle region [PF14783.8, score=19.6]} {Human: ENSG00000171566, PLRG1, pleiotropic regulator 1, [RH, Score=573, Expect=0.0]} {Mouse: ENSMUSG00000027998, Plrg1, pleiotropic regulator 1, [RH, Score=584, Expect=0.0]} {Dmel: FBgn0030365, Tango4, Transport and Golgi organization 4, [RH, Score=569, Expect=0.0]} {Celegans: WBGene00006481, plrg-1, PLeiotropic ReGulator (Vertebrate) homolog, [RH, Score=523, Expect=0.0]} {Smed: dd_Smed_v6_6000_0_1, dd_Smed_v6_6000_0_1, [RH, Score=464, Expect=7e-162]} {RNA1509_33802, RNA1509_8487} {RNA1310_19706, RNA1509_33802, RNA1509_8487} {RNA1509_33802, RNA1509_8487, RNA815_8176}

Mlig455_006402 {REF} {Length: 1604} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=151.7]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=35.0]; Nup133 N terminal like [PF08801.13, score=20.9]; Ciliary BBSome complex subunit 2, middle region [PF14783.8, score=19.4]} {Human: ENSG00000171566, PLRG1, pleiotropic regulator 1, [RH, Score=576, Expect=0.0]} {Mouse: ENSMUSG00000027998, Plrg1, pleiotropic regulator 1, [RH, Score=588, Expect=0.0]} {Dmel: FBgn0030365, Tango4, Transport and Golgi organization 4, [RH, Score=571, Expect=0.0]} {Celegans: WBGene00006481, plrg-1, PLeiotropic ReGulator (Vertebrate) homolog, [RH, Score=525, Expect=0.0]} {Smed: dd_Smed_v6_6000_0_1, dd_Smed_v6_6000_0_1, [RH, Score=468, Expect=3e-163]} {RNA1509_33802} {RNA1310_19706} {RNA815_8176}
5. MligTC455_47344 475 9.9 Mlig455_032224, Mlig455_032228

Neo: -

Age: -

Region-enriched R4: 2.791/0.02719

 0.953 - - 0.953 - - -

Mlig455_032224 {REF} {Length: 904} {RNA1509_53154} {RNA1310_30331} {RNA815_19620}

Mlig455_032228 {REF} {Length: 640} {RNA1509_53154} {RNA1310_30331} {RNA815_19620}
6. MligTC455_37144 491 10.24 Mlig455_032921

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_032921 {REF} {Length: 4950} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=39.6]} {Celegans: WBGene00020012, R11G1.6, [RH, Score=52.8, Expect=1e-06]} {Smed: dd_Smed_v6_6358_0_1, dd_Smed_v6_6358_0_1, [Score=53.9, Expect=3e-07]} {RNA1509_11432} {RNA1310_6480.3} {RNA815_1981.1}
7. MligTC455_47990 1350 28.12 Mlig455_025578, Mlig455_060620

Neo: -

Age: Down-Up-Down

 MEIS1 0.95 - - 0.950 - - -

Mlig455_025578 {REF} {Length: 2543} {Pfam: N-terminal of Homeobox Meis and PKNOX1 [PF16493.7, score=132.7]; Homeobox KN domain [PF05920.13, score=71.2]; Homeodomain [PF00046.31, score=32.5]} {Human: ENSG00000143995, MEIS1, Meis homeobox 1, [RH, Score=203, Expect=5e-58]; ENSG00000134138, MEIS2, Meis homeobox 2, [RH, Score=199, Expect=2e-56]} {Mouse: ENSMUSG00000020160, Meis1, Meis homeobox 1, [RH, Score=204, Expect=2e-58]; ENSMUSG00000027210, Meis2, Meis homeobox 2, [RH, Score=199, Expect=2e-56]} {Dmel: FBgn0001235, hth, homothorax, [RH, Score=192, Expect=5e-54]} {Celegans: WBGene00006796, unc-62, Homeobox protein unc-62, [RH, Score=171, Expect=9e-46]} {Smed: dd_Smed_v6_6114_0_2, dd_Smed_v6_6114_0_2, [RH, Score=223, Expect=7e-65]} {RNA1509_4465} {RNA1310_4878.1} {RNA815_4367}

Mlig455_060620 {REF} {Length: 3501} {Pfam: N-terminal of Homeobox Meis and PKNOX1 [PF16493.7, score=132.7]; Homeobox KN domain [PF05920.13, score=71.2]; Homeodomain [PF00046.31, score=32.5]} {Human: ENSG00000143995, MEIS1, Meis homeobox 1, [RH, Score=203, Expect=5e-58]; ENSG00000134138, MEIS2, Meis homeobox 2, [RH, Score=199, Expect=2e-56]} {Mouse: ENSMUSG00000020160, Meis1, Meis homeobox 1, [RH, Score=204, Expect=2e-58]; ENSMUSG00000027210, Meis2, Meis homeobox 2, [RH, Score=199, Expect=2e-56]} {Dmel: FBgn0001235, hth, homothorax, [RH, Score=192, Expect=5e-54]} {Celegans: WBGene00006796, unc-62, Homeobox protein unc-62, [RH, Score=171, Expect=9e-46]} {Smed: dd_Smed_v6_6114_0_2, dd_Smed_v6_6114_0_2, [RH, Score=223, Expect=7e-65]} {RNA1509_4465} {RNA1310_4878.1, RNA1509_4465} {RNA1509_4465, RNA815_4367}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA