Data search
Results for MligTC455_22181
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_22181 | 42 | 0.87 | Mlig455_015815 | Neo: - Age: - |
SIM1 | Mlig455_015815 {REF} {Length: 3132} {Pfam: PAS domain [PF14598.8, score=70.8]; PAS fold [PF08447.14, score=64.5]; PAS fold [PF00989.27, score=54.6]; PAS fold [PF08448.12, score=35.4]; PAS domain [PF13426.9, score=24.5]; Helix-loop-helix DNA-binding domain [PF00010.28, score=20.5]} {Human: ENSG00000112246, SIM1, SIM bHLH transcription factor 1, [Score=295, Expect=1e-89]; ENSG00000159263, SIM2, SIM bHLH transcription factor 2, [Score=289, Expect=2e-88]} {Mouse: ENSMUSG00000062713, Sim2, single-minded family bHLH transcription factor 2, [Score=297, Expect=9e-95]; ENSMUSG00000019913, Sim1, single-minded family bHLH transcription factor 1, [Score=294, Expect=2e-89]} {Dmel: FBgn0004666, sim, single-minded, [Score=251, Expect=3e-74]} {Celegans: WBGene00011327, hlh-34, Helix-loop-helix 34, [Score=102, Expect=1e-23]} {Smed: dd_Smed_v6_17731_0_1, dd_Smed_v6_17731_0_1, [Score=279, Expect=5e-85]} {RNA1509_48399} {RNA1310_29071, RNA1509_48399} {RNA1509_48399, RNA815_28494} |
Cumulative graph for MligTC455_22181
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 1.416 | 1.428 | 1.00000 | 1.00000 | |
| RegionR2 | -2.007 | 1.428 | 0.95596 | 1.00000 | |
| RegionR3 | 0.684 | 1.428 | 0.51488 | 1.00000 | |
| RegionR4 | 3.376 | 1.428 | 0.02050 | 0.10402 | |
| RegionR5 | 1.007 | 1.428 | 0.36874 | 0.72136 | |
| RegionR6 | 0.367 | 1.428 | 0.61305 | 1.00000 | |
| RegionR7 | -2.587 | 1.428 | 0.99973 | 1.00000 | |
| RegionR8 | -2.256 | 1.428 | 0.99967 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -3.943 | 1.428 | 0.99982 | 1.00000 | |
| RegenerationR2 | 0.721 | 1.428 | 0.50307 | 0.87246 | |
| RegenerationR3 | -0.112 | 1.428 | 0.79367 | 0.98005 | |
| RegenerationR4 | -0.7 | 1.428 | 0.38462 | 0.80399 | |
| RegenerationR5 | -1.157 | 1.428 | 0.16711 | 0.59363 | |
| RegenerationR6 | -0.431 | 1.428 | 0.63337 | 0.88898 | |
| RegenerationBL | 0.765 | 1.428 | 0.57123 | 0.92463 | |
| RegenerationTP | 2.124 | 1.428 | 0.41258 | 0.83876 |
Genes with expression patterns similar to MligTC455_22181
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_22181 | 42 | 0.87 | Mlig455_015815 | Neo: - Age: - |
SIM1 | 3 | - | - | - | 1.000 | 1.000 | 1.000 | Mlig455_015815 {REF} {Length: 3132} {Pfam: PAS domain [PF14598.8, score=70.8]; PAS fold [PF08447.14, score=64.5]; PAS fold [PF00989.27, score=54.6]; PAS fold [PF08448.12, score=35.4]; PAS domain [PF13426.9, score=24.5]; Helix-loop-helix DNA-binding domain [PF00010.28, score=20.5]} {Human: ENSG00000112246, SIM1, SIM bHLH transcription factor 1, [Score=295, Expect=1e-89]; ENSG00000159263, SIM2, SIM bHLH transcription factor 2, [Score=289, Expect=2e-88]} {Mouse: ENSMUSG00000062713, Sim2, single-minded family bHLH transcription factor 2, [Score=297, Expect=9e-95]; ENSMUSG00000019913, Sim1, single-minded family bHLH transcription factor 1, [Score=294, Expect=2e-89]} {Dmel: FBgn0004666, sim, single-minded, [Score=251, Expect=3e-74]} {Celegans: WBGene00011327, hlh-34, Helix-loop-helix 34, [Score=102, Expect=1e-23]} {Smed: dd_Smed_v6_17731_0_1, dd_Smed_v6_17731_0_1, [Score=279, Expect=5e-85]} {RNA1509_48399} {RNA1310_29071, RNA1509_48399} {RNA1509_48399, RNA815_28494} |
| 2. | MligTC455_08029 | 56 | 1.17 | Mlig455_005478 | Neo: - Age: - |
1.678 | - | - | - | 0.975 | 0.703 | - | Mlig455_005478 {REF} {Length: 968} {NoTransDecoderORF} {RNA1310_138835} | |
| 3. | MligTC455_17477 | 47 | 0.98 | Mlig455_053346 | Neo: - Age: - |
0.982 | - | - | - | 0.982 | - | - | Mlig455_053346 {REF} {Length: 2041} {RNA1509_20382} {RNA1310_59327} {RNA815_58492} | |
| 4. | MligTC455_27043 | 170 | 3.55 | Mlig455_032585 | Neo: - Age: Up-Down-Down |
0.975 | - | - | - | - | 0.975 | - | Mlig455_032585 {REF} {Length: 8697} {Pfam: Fibronectin type III domain [PF00041.23, score=57.2]} {RNA1509_4388} {RNA1310_213.2} {RNA815_43.1} | |
| 5. | MligTC455_46263 | 67 | 1.39 | Mlig455_058665 | Neo: - Age: - |
SLC26A1 | 0.968 | - | - | - | - | 0.968 | - | Mlig455_058665 {REF} {Length: 1886} {Pfam: STAS domain [PF01740.23, score=89.4]; Sulfate permease family [PF00916.22, score=38.8]; STAS domain [PF13466.8, score=26.9]} {Human: ENSG00000145217, SLC26A1, solute carrier family 26 member 1, [Score=68.2, Expect=8e-12]} {Mouse: ENSMUSG00000020651, Slc26a4, solute carrier family 26, member 4, [Score=71.2, Expect=5e-13]} {Dmel: FBgn0036770, Prestin, [Score=72.4, Expect=2e-13]} {Celegans: WBGene00017464, sulp-2, Anion transporter SULP-2; SULfate Permease family, [Score=69.7, Expect=9e-13]} {Smed: dd_Smed_v6_10602_0_1, dd_Smed_v6_10602_0_1, [Score=71.6, Expect=1e-13]} {RNA1509_45237} {RNA1310_30910} {RNA815_30992} |
| 6. | MligTC455_12268 | 21 | 0.44 | Mlig455_020458 | Neo: - Age: - |
0.965 | - | - | - | 0.965 | - | - | Mlig455_020458 {REF} {Length: 1693} {Pfam: TATA element modulatory factor 1 DNA binding [PF12329.10, score=20.4]} {RNA1509_10012, RNA1509_37655} {RNA1310_23404.1, RNA1509_10012, RNA1509_37655} {RNA1509_10012, RNA1509_37655, RNA815_8343.1} | |
| 7. | MligTC455_03416 | 84 | 1.76 | Mlig455_023975 | Neo: - Age: - |
0.964 | - | - | - | 0.964 | - | - | Mlig455_023975 {REF} {Length: 498} {TRANSSPLICED} {RNA1509_44734} {RNA1310_54408} {RNA815_31392} | |
| 8. | MligTC455_36374 | 58 | 1.2 | Mlig455_016115 | Neo: - Age: - |
0.95 | - | - | - | 0.950 | - | - | Mlig455_016115 {REF} {Length: 4900} {RNA1509_18263} {RNA1310_1232} {RNA815_347} |
Berezikov Lab - 2020-2021 © ERIBA