TomoSeq data search

Data search

Results for MligTC455_22433

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_22433

447

9.31

Mlig455_026751, Mlig455_051741

Neo: Int S/G2/M

Age: Up-Down-Down

USP49

Mlig455_026751 {REF} {Length: 7322} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=118.0]} {Human: ENSG00000164663, USP49, ubiquitin specific peptidase 49, [Score=52.0, Expect=4e-06]; ENSG00000140455, USP3, ubiquitin specific peptidase 3, [Score=52.0, Expect=3e-06]} {Mouse: ENSMUSG00000053483, Usp21, ubiquitin specific peptidase 21, [Score=50.1, Expect=9e-06]; ENSMUSG00000090115, Usp49, ubiquitin specific peptidase 49, [Score=49.7, Expect=1e-05]; ENSMUSG00000032376, Usp3, ubiquitin specific peptidase 3, [Score=49.3, Expect=1e-05]} {RNA1509_14174} {RNA1310_11133, RNA1509_14174} {RNA1509_14174, RNA815_3873.1}

Mlig455_051741 {REF} {Length: 7065} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=118.3]} {Human: ENSG00000164663, USP49, ubiquitin specific peptidase 49, [Score=52.8, Expect=2e-06]; ENSG00000140455, USP3, ubiquitin specific peptidase 3, [Score=52.0, Expect=2e-06]} {Mouse: ENSMUSG00000053483, Usp21, ubiquitin specific peptidase 21, [Score=50.4, Expect=6e-06]; ENSMUSG00000090115, Usp49, ubiquitin specific peptidase 49, [Score=49.7, Expect=1e-05]; ENSMUSG00000032376, Usp3, ubiquitin specific peptidase 3, [Score=49.3, Expect=1e-05]} {RNA1509_14174, RNA1509_41159} {RNA1310_11133, RNA1509_41159} {RNA1509_41159, RNA815_3873.1}

Cumulative graph for MligTC455_22433

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.951	3.626	0.51466	1.00000
RegionR2	0.006	3.626	0.99449	1.00000
RegionR3	-0.249	3.626	0.67240	1.00000
RegionR4	1.263	3.626	0.04578	0.18174
RegionR5	0.573	3.626	0.25419	0.57186
RegionR6	0.042	3.626	0.93954	1.00000
RegionR7	0.456	3.626	0.47000	1.00000
RegionR8	-1.14	3.626	0.22061	0.82839

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.999	3.626	0.60468	1.00000
RegenerationR2	-0.105	3.626	0.86619	1.00000
RegenerationR3	0.621	3.626	0.36943	0.78356
RegenerationR4	-0.772	3.626	0.26771	0.71460
RegenerationR5	0.217	3.626	0.72368	0.96070
RegenerationR6	0.238	3.626	0.72594	0.93862
RegenerationBL	-0.293	3.626	0.72730	1.00000
RegenerationTP	0.791	3.626	0.32269	0.76703

Genes with expression patterns similar to MligTC455_22433

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_22433	447	9.31	Mlig455_026751, Mlig455_051741	Neo: Int S/G2/M Age: Up-Down-Down	USP49	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_026751 {REF} {Length: 7322} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=118.0]} {Human: ENSG00000164663, USP49, ubiquitin specific peptidase 49, [Score=52.0, Expect=4e-06]; ENSG00000140455, USP3, ubiquitin specific peptidase 3, [Score=52.0, Expect=3e-06]} {Mouse: ENSMUSG00000053483, Usp21, ubiquitin specific peptidase 21, [Score=50.1, Expect=9e-06]; ENSMUSG00000090115, Usp49, ubiquitin specific peptidase 49, [Score=49.7, Expect=1e-05]; ENSMUSG00000032376, Usp3, ubiquitin specific peptidase 3, [Score=49.3, Expect=1e-05]} {RNA1509_14174} {RNA1310_11133, RNA1509_14174} {RNA1509_14174, RNA815_3873.1} Mlig455_051741 {REF} {Length: 7065} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=118.3]} {Human: ENSG00000164663, USP49, ubiquitin specific peptidase 49, [Score=52.8, Expect=2e-06]; ENSG00000140455, USP3, ubiquitin specific peptidase 3, [Score=52.0, Expect=2e-06]} {Mouse: ENSMUSG00000053483, Usp21, ubiquitin specific peptidase 21, [Score=50.4, Expect=6e-06]; ENSMUSG00000090115, Usp49, ubiquitin specific peptidase 49, [Score=49.7, Expect=1e-05]; ENSMUSG00000032376, Usp3, ubiquitin specific peptidase 3, [Score=49.3, Expect=1e-05]} {RNA1509_14174, RNA1509_41159} {RNA1310_11133, RNA1509_41159} {RNA1509_41159, RNA815_3873.1}
2.	MligTC455_16029	143	2.99	Mlig455_015088	Neo: - Age: -	CDK11B	0.977	-	-	-	-	-	0.977	Mlig455_015088 {REF} {Length: 6058} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=215.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=97.1]; BTB/POZ domain [PF00651.33, score=82.9]; Kinase-like [PF14531.8, score=22.5]; Peptidase family S64 [PF08192.13, score=17.6]} {Human: ENSG00000248333, CDK11B, cyclin dependent kinase 11B, [RH, Score=514, Expect=4e-165]; ENSG00000008128, CDK11A, cyclin dependent kinase 11A, [RH, Score=508, Expect=1e-162]} {Mouse: ENSMUSG00000029062, Cdk11b, cyclin-dependent kinase 11B, [RH, Score=512, Expect=2e-164]} {Dmel: FBgn0016696, Pitslre, [RH, Score=502, Expect=1e-158]} {Celegans: WBGene00015203, cdk-11.1, Putative serine/threonine-protein kinase B0495.2, [RH, Score=432, Expect=2e-135]} {Smed: dd_Smed_v6_3540_0_3, dd_Smed_v6_3540_0_3, [RH, Score=495, Expect=4e-159]} {RNA1509_23995} {RNA1310_10655} {RNA815_5865}
3.	MligTC455_27422	441	9.18	Mlig455_040999	Neo: - Age: -	ATF7	0.967	-	-	-	-	-	0.967	Mlig455_040999 {REF} {Length: 3724} {TRANSSPLICED} {Pfam: bZIP transcription factor [PF00170.23, score=30.3]; Basic region leucine zipper [PF07716.17, score=24.9]; Phlebovirus nonstructural protein NS-M [PF07246.13, score=24.6]; bZIP Maf transcription factor [PF03131.19, score=22.6]} {Human: ENSG00000170653, ATF7, activating transcription factor 7, [Score=73.6, Expect=3e-13]; ENSG00000267281, AC023509.3, novel protein, [Score=73.2, Expect=4e-13]; ENSG00000115966, ATF2, activating transcription factor 2, [Score=72.8, Expect=6e-13]; ENSG00000146592, CREB5, cAMP responsive element binding protein 5, [Score=70.1, Expect=3e-12]} {Mouse: ENSMUSG00000099083, Atf7, activating transcription factor 7, [Score=73.6, Expect=2e-13]; ENSMUSG00000052414, Gm28047, predicted gene, 28047, [Score=72.4, Expect=5e-13]; ENSMUSG00000027104, Atf2, activating transcription factor 2, [Score=72.0, Expect=7e-13]} {Dmel: FBgn0265784, CrebB, Cyclic-AMP response element binding protein B, [Score=50.4, Expect=3e-06]} {Celegans: WBGene00000793, crh-1, CREB Homolog; Cyclic AMP-response element binding protein 1 gamma 2, [Score=55.8, Expect=5e-08]} {RNA1509_19991, RNA1509_49323} {RNA1310_14708, RNA1509_19991, RNA1509_49323} {RNA1509_19991, RNA1509_49323, RNA815_18843.1}
4.	MligTC455_48612	774	16.13	Mlig455_003119, Mlig455_062766	Neo: Int S/G2/M Age: -	BAK1	0.963	-	-	-	-	-	0.963	Mlig455_003119 {REF} {Length: 3495} {TRANSSPLICED} {Pfam: Apoptosis regulator proteins, Bcl-2 family [PF00452.21, score=102.3]} {Human: ENSG00000030110, BAK1, BCL2 antagonist/killer 1, [RH, Score=136, Expect=9e-39]} {Mouse: ENSMUSG00000057789, Bak1, BCL2-antagonist/killer 1, [Score=124, Expect=2e-34]} {Smed: dd_Smed_v6_2588_0_1, dd_Smed_v6_2588_0_1, [RH, Score=79.0, Expect=2e-17]} {RNA1509_29615} {RNA1310_21631, RNA1509_29615} {RNA1509_29615, RNA815_9826.1} Mlig455_062766 {REF} {Length: 3225} {TRANSSPLICED} {Pfam: Apoptosis regulator proteins, Bcl-2 family [PF00452.21, score=102.3]} {Human: ENSG00000030110, BAK1, BCL2 antagonist/killer 1, [RH, Score=136, Expect=9e-39]} {Mouse: ENSMUSG00000057789, Bak1, BCL2-antagonist/killer 1, [Score=124, Expect=2e-34]} {Smed: dd_Smed_v6_2588_0_1, dd_Smed_v6_2588_0_1, [RH, Score=79.0, Expect=2e-17]} {RNA1509_27729, RNA1509_41157} {RNA1310_28724, RNA1509_27729, RNA1509_41157} {RNA1509_27729, RNA1509_41157, RNA815_19878}
5.	MligTC455_31938	131	2.74	Mlig455_041047	Neo: - Age: -		0.962	-	-	-	-	-	0.962	Mlig455_041047 {REF} {Length: 1376} {RNA1509_52877} {RNA1310_44065.2} {RNA815_31243}
6.	MligTC455_19191	486	10.13	Mlig455_026480	Neo: - Age: -	DGCR6L	0.957	-	-	-	-	-	0.957	Mlig455_026480 {REF} {Length: 2110} {TRANSSPLICED} {Pfam: DiGeorge syndrome critical region 6 (DGCR6) protein [PF07324.13, score=181.5]; Protein of unknown function (DUF2458) [PF10454.11, score=22.6]} {Human: ENSG00000128185, DGCR6L, DiGeorge syndrome critical region gene 6 like, [RH, Score=100, Expect=1e-25]; ENSG00000278817, AC007325.4, protein DGCR6, [RH, Score=98.6, Expect=5e-25]; ENSG00000183628, DGCR6, DiGeorge syndrome critical region gene 6, [RH, Score=98.6, Expect=5e-25]} {Mouse: ENSMUSG00000111647, Dgcr6, DiGeorge syndrome critical region gene 6, [RH, Score=99.8, Expect=8e-26]; ENSMUSG00000003531, Dgcr6, DiGeorge syndrome critical region gene 6, [RH, Score=99.8, Expect=8e-26]} {Dmel: FBgn0001099, gdl, gonadal, [RH, Score=122, Expect=5e-35]} {Smed: dd_Smed_v6_6214_0_1, dd_Smed_v6_6214_0_1, [RH, Score=112, Expect=4e-31]} {RNA1509_18355, RNA1509_23247} {RNA1310_28938, RNA1509_18355, RNA1509_23247} {RNA1509_18355, RNA1509_23247, RNA815_13630}
7.	MligTC455_42497	427	8.9	Mlig455_025883, Mlig455_062264	Neo: - Age: - Region-enriched R5: 1.978/0.02600	SOCS6	0.956	-	-	-	-	-	0.956	Mlig455_025883 {REF} {Length: 2688} {TRANSSPLICED} {Pfam: SOCS box [PF07525.18, score=33.0]; SH2 domain [PF00017.26, score=26.0]} {Human: ENSG00000170677, SOCS6, suppressor of cytokine signaling 6, [Score=77.4, Expect=4e-15]} {Mouse: ENSMUSG00000056153, Socs6, suppressor of cytokine signaling 6, [Score=76.6, Expect=4e-15]} {Dmel: FBgn0030869, Socs16D, Suppressor of Cytokine Signaling at 16D, [Score=77.0, Expect=3e-15]} {Celegans: WBGene00009556, F39B2.5, [Score=45.4, Expect=1e-05]} {Smed: dd_Smed_v6_13802_0_1, dd_Smed_v6_13802_0_1, [Score=94.4, Expect=1e-21]} {RNA1509_29098} {RNA1310_16429.1} {RNA815_12857} Mlig455_062264 {REF} {Length: 1811} {TRANSSPLICED} {Pfam: SOCS box [PF07525.18, score=33.1]; SH2 domain [PF00017.26, score=28.0]} {Human: ENSG00000170677, SOCS6, suppressor of cytokine signaling 6, [Score=80.9, Expect=3e-16]} {Mouse: ENSMUSG00000056153, Socs6, suppressor of cytokine signaling 6, [Score=80.5, Expect=2e-16]} {Dmel: FBgn0030869, Socs16D, Suppressor of Cytokine Signaling at 16D, [Score=79.0, Expect=7e-16]} {Celegans: WBGene00009556, F39B2.5, [Score=47.0, Expect=4e-06]} {Smed: dd_Smed_v6_13802_0_1, dd_Smed_v6_13802_0_1, [Score=95.1, Expect=5e-22]} {RNA1509_29098} {RNA1310_16429.1, RNA1509_29098} {RNA1509_29098, RNA815_12857}
8.	MligTC455_47349	1450	30.22	Mlig455_010530, Mlig455_061804	Neo: Neoblast, stringent Age: - Region-enriched R5: 1.675/0.00004 Region-enriched R4: 1.345/0.03938	DNMT3B	0.956	-	-	-	-	-	0.956	Mlig455_010530 {REF} {Length: 2248} {TRANSSPLICED} {Pfam: Cysteine rich ADD domain in DNMT3 [PF17980.3, score=29.7]} {Human: ENSG00000088305, DNMT3B, DNA methyltransferase 3 beta, [Score=89.0, Expect=1e-17]} {Mouse: ENSMUSG00000027478, Dnmt3b, DNA methyltransferase 3B, [Score=97.1, Expect=2e-20]; ENSMUSG00000082079, Dnmt3c, DNA methyltransferase 3C, [Score=94.7, Expect=1e-19]} {RNA1509_23149} {RNA1310_10697.1, RNA1509_23149} {RNA1509_23149, RNA815_14886} Mlig455_061804 {REF} {Length: 2249} {TRANSSPLICED} {Pfam: Cysteine rich ADD domain in DNMT3 [PF17980.3, score=29.7]} {Human: ENSG00000088305, DNMT3B, DNA methyltransferase 3 beta, [Score=89.4, Expect=9e-18]} {Mouse: ENSMUSG00000027478, Dnmt3b, DNA methyltransferase 3B, [Score=97.1, Expect=2e-20]; ENSMUSG00000082079, Dnmt3c, DNA methyltransferase 3C, [Score=94.7, Expect=9e-20]} {RNA1509_23149} {RNA1310_10697.1} {RNA815_14886}
9.	MligTC455_52818	520	10.84	Mlig455_022841	Neo: Int S/G2/M Age: Down-Up-Down, logFC(26M/2M)=-0.250	IMPDH1	0.956	-	-	-	-	-	0.956	Mlig455_022841 {REF} {Length: 3806} {Pfam: IMP dehydrogenase / GMP reductase domain [PF00478.27, score=449.3]; Nitronate monooxygenase [PF03060.17, score=56.0]; CBS domain [PF00571.30, score=41.5]; FMN-dependent dehydrogenase [PF01070.20, score=40.6]; Histidine biosynthesis protein [PF00977.23, score=27.4]; Thiazole biosynthesis protein ThiG [PF05690.16, score=18.4]} {Human: ENSG00000106348, IMPDH1, inosine monophosphate dehydrogenase 1, [RH, Score=790, Expect=0.0]; ENSG00000178035, IMPDH2, inosine monophosphate dehydrogenase 2, [RH, Score=776, Expect=0.0]} {Mouse: ENSMUSG00000003500, Impdh1, inosine monophosphate dehydrogenase 1, [RH, Score=785, Expect=0.0]; ENSMUSG00000062867, Impdh2, inosine monophosphate dehydrogenase 2, [RH, Score=773, Expect=0.0]} {Dmel: FBgn0003204, ras, raspberry, [RH, Score=709, Expect=0.0]} {Celegans: WBGene00020682, T22D1.3, Inosine-5'-monophosphate dehydrogenase, [RH, Score=543, Expect=0.0]} {Smed: dd_Smed_v6_4321_0_2, dd_Smed_v6_4321_0_2, [RH, Score=755, Expect=0.0]} {RNA1509_4134, RNA1509_47560} {RNA1310_8483.1, RNA1509_47560} {RNA1509_47560, RNA815_4082}
10.	MligTC455_42827	161	3.36	Mlig455_040618, Mlig455_040628	Neo: - Age: logFC(26M/2M)=-0.538	WDR26	0.951	-	-	-	-	-	0.951	Mlig455_040618 {REF} {Length: 3504} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=63.0]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=36.6]} {Human: ENSG00000162923, WDR26, WD repeat domain 26, [RH, Score=418, Expect=3e-138]} {Mouse: ENSMUSG00000038733, Wdr26, WD repeat domain 26, [RH, Score=427, Expect=2e-142]} {Dmel: FBgn0037094, CG7611, [RH, Score=392, Expect=9e-129]} {Celegans: WBGene00010572, wdr-5.2, WD repeat-containing protein wdr-5.2, [Score=68.6, Expect=4e-12]} {Smed: dd_Smed_v6_6611_0_1, dd_Smed_v6_6611_0_1, [RH, Score=228, Expect=8e-66]} {RNA1509_20107} {RNA1310_14508.1} {RNA815_16830} Mlig455_040628 {REF} {Length: 1585} {Pfam: WD domain, G-beta repeat [PF00400.34, score=28.2]} {Human: ENSG00000162923, WDR26, WD repeat domain 26, [Score=134, Expect=6e-33]} {Mouse: ENSMUSG00000038733, Wdr26, WD repeat domain 26, [Score=134, Expect=3e-33]} {Dmel: FBgn0037094, CG7611, [Score=127, Expect=4e-31]} {Smed: dd_Smed_v6_6611_0_1, dd_Smed_v6_6611_0_1, [Score=79.3, Expect=2e-15]} {RNA1509_20107} {RNA1310_14508.1} {RNA815_16830}

Berezikov Lab - 2020-2021 © ERIBA