M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22733

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22733 41 0.85 Mlig455_034409

Neo: -

Age: Down-Up-Down

 Mlig455_034409 {REF} {Length: 3449} {RNA1509_47691} {RNA1310_5733} {RNA815_5692.2}

Cumulative graph for MligTC455_22733

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.586 0.934 0.99993 1.00000
RegionR2 4.008 0.934 1.00000 1.00000
RegionR3 2.981 0.934 1.00000 1.00000
RegionR4 -2.088 0.934 0.99982 1.00000
RegionR5 -0.633 0.934 0.99984 1.00000
RegionR6 0.845 0.934 0.99982 1.00000
RegionR7 -1.05 0.934 0.99983 1.00000
RegionR8 -1.478 0.934 0.99985 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.774 0.934 0.99994 1.00000
RegenerationR2 -1.361 0.934 0.01289 0.18451
RegenerationR3 -1.768 0.934 1.00000 1.00000
RegenerationR4 0.339 0.934 1.00000 1.00000
RegenerationR5 -0.727 0.934 0.99961 1.00000
RegenerationR6 0.899 0.934 0.99965 1.00000
RegenerationBL -2.541 0.934 0.99986 1.00000
RegenerationTP 3.451 0.934 0.99981 1.00000


Genes with expression patterns similar to MligTC455_22733

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22733 41 0.85 Mlig455_034409

Neo: -

Age: Down-Up-Down

 1 - - - - 1.000 - Mlig455_034409 {REF} {Length: 3449} {RNA1509_47691} {RNA1310_5733} {RNA815_5692.2}
2. MligTC455_37902 24 0.5 Mlig455_065339

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_065339 {REF} {Length: 634} {NoTransDecoderORF} {RNA1509_47234} {RNA1310_28721} {RNA815_14343.1}
3. MligTC455_36085 165 3.44 Mlig455_043517, Mlig455_052478

Neo: -

Age: -

Region-enriched R2: 4.331/0.04635

 0.971 - - - - 0.971 -

Mlig455_043517 {REF} {Length: 3078} {NoTransDecoderORF} {RNA1509_43957} {RNA1310_14043} {RNA815_37878}

Mlig455_052478 {REF} {Length: 617} {NoTransDecoderORF} {RNA1509_43957} {RNA1310_64561} {RNA815_37878}
4. MligTC455_30834 130 2.72 Mlig455_058052

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=1.183

 HDAC11 0.965 - - - - 0.965 - Mlig455_058052 {REF} {Length: 12455} {Pfam: Histone deacetylase domain [PF00850.21, score=140.8]} {Human: ENSG00000163517, HDAC11, histone deacetylase 11, [Score=310, Expect=8e-103]} {Mouse: ENSMUSG00000034245, Hdac11, histone deacetylase 11, [Score=308, Expect=6e-102]} {Dmel: FBgn0051119, HDAC11, Histone deacetylase 11, [Score=263, Expect=2e-84]} {Celegans: WBGene00007953, hda-11, Histone DeAcetylase, [Score=225, Expect=3e-70]} {Smed: dd_Smed_v6_3401_0_4, dd_Smed_v6_3401_0_4, [Score=248, Expect=3e-79]} {RNA1509_12648} {RNA1310_37725.1} {RNA815_2054.1}
5. MligTC455_39382 127 2.66 Mlig455_011015, Mlig455_016546, Mlig455_027965, Mlig455_027966, Mlig455_031859, Mlig455_031860, Mlig455_037491, Mlig455_037492, Mlig455_038077, Mlig455_048598, Mlig455_048677, Mlig455_048710, Mlig455_049123, Mlig455_053805, Mlig455_055832, Mlig455_069771, Mlig455_069792

Neo: -

Age: Up-Down-Up

 PLS3 0.965 - - - - 0.965 -

Mlig455_011015 {REF} {Length: 743} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=32.1]} {RNA1310_31558.1} {RNA815_40540}

Mlig455_016546 {REF} {Length: 959} {Smed: dd_Smed_v6_9908_0_1, dd_Smed_v6_9908_0_1, [Score=57.4, Expect=1e-09]} {RNA1509_13203} {RNA1310_267.1} {RNA815_381.1}

Mlig455_027965 {REF} {Length: 2001} {Pfam: Calponin homology (CH) domain [PF00307.33, score=45.8]} {Human: ENSG00000102024, PLS3, plastin 3, [Score=78.2, Expect=4e-15]; ENSG00000136167, LCP1, lymphocyte cytosolic protein 1, [Score=75.1, Expect=7e-15]} {Mouse: ENSMUSG00000016382, Pls3, plastin 3 (T-isoform), [Score=78.2, Expect=3e-15]; ENSMUSG00000021998, Lcp1, lymphocyte cytosolic protein 1, [Score=74.3, Expect=5e-14]} {Dmel: FBgn0024238, Fim, Fimbrin, [Score=72.4, Expect=1e-13]} {Smed: dd_Smed_v6_1678_0_1, dd_Smed_v6_1678_0_1, [Score=83.2, Expect=2e-17]} {RNA1509_13203} {RNA1310_267.1} {RNA815_381.1}

Mlig455_027966 {REF} {Length: 1665} {RNA1509_19660} {RNA1310_31558.1} {RNA815_40540}

Mlig455_031859 {REF} {Length: 2487} {RNA1509_26772} {RNA1310_30181.1} {RNA815_36710}

Mlig455_031860 {REF} {Length: 743} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=32.8]} {RNA1310_31558.2} {RNA815_40540}

Mlig455_037491 {REF} {Length: 434} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=24.1]} {Smed: dd_Smed_v6_9908_0_1, dd_Smed_v6_9908_0_1, [Score=76.3, Expect=8e-18]} {RNA1509_52826} {RNA1310_80921} {RNA815_381.1}

Mlig455_037492 {REF} {Length: 743} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=32.8]} {RNA1310_31558.2} {RNA815_40540}

Mlig455_038077 {REF} {Length: 743} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=32.8]} {RNA1310_31558.2} {RNA815_40540}

Mlig455_048598 {REF} {Length: 743} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=32.1]} {RNA1310_31558.1} {RNA815_40540}

Mlig455_048677 {REF} {Length: 743} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=32.1]} {RNA1310_31558.1} {RNA815_40540}

Mlig455_048710 {REF} {Length: 743} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=32.1]} {RNA1310_31558.1} {RNA815_40540}

Mlig455_049123 {REF} {Length: 743} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=32.8]} {RNA1310_31558.2} {RNA815_40540}

Mlig455_053805 {REF} {Length: 7767} {Pfam: Receptor family ligand binding region [PF01094.30, score=24.9]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=21.2]} {Smed: dd_Smed_v6_26870_0_1, dd_Smed_v6_26870_0_1, [Score=55.8, Expect=1e-08]} {RNA1509_13203} {RNA1310_267.1} {RNA815_381.1}

Mlig455_055832 {REF} {Length: 743} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=32.0]} {RNA1310_31558.2} {RNA815_40540}

Mlig455_069771 {REF} {Length: 434} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=23.2]} {Smed: dd_Smed_v6_9908_0_3, dd_Smed_v6_9908_0_3, [Score=75.9, Expect=1e-17]} {RNA1509_52826} {RNA1310_80921} {RNA815_381.1}

Mlig455_069792 {REF} {Length: 434} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=24.1]} {Smed: dd_Smed_v6_9908_0_3, dd_Smed_v6_9908_0_3, [Score=76.6, Expect=4e-18]} {RNA1509_52826} {RNA1310_80921} {RNA815_381.1}
6. MligTC455_13588 43 0.9 Mlig455_070234

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_070234 {REF} {Length: 857} {Pfam: Tup N-terminal [PF08581.12, score=24.8]} {RNA1310_118445}
7. MligTC455_17151 70 1.45 Mlig455_022264

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_022264 {REF} {Length: 2660} {NoTransDecoderORF} {RNA1509_47234} {RNA1310_2938.1} {RNA815_14343.1}
8. MligTC455_40668 165 3.45 Mlig455_016268

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_016268 {REF} {Length: 794} {RNA1509_47841} {RNA1310_11055} {RNA815_24189}
9. MligTC455_21792 120 2.5 Mlig455_019461, Mlig455_062164

Neo: -

Age: -

 0.963 - - - - 0.963 -

Mlig455_019461 {REF} {Length: 1989} {RNA1509_57867} {RNA1310_75051} {RNA815_43995.1}

Mlig455_062164 {REF} {Length: 1297} {RNA1509_57867} {RNA1310_23482} {RNA815_21848}
10. MligTC455_28977 735 15.3 Mlig455_000572, Mlig455_003191, Mlig455_003290, Mlig455_016496, Mlig455_022341, Mlig455_023424, Mlig455_023450, Mlig455_032331

Neo: -

Age: -

Region-enriched R4: 4.319/0.02249

 0.963 - - - - 0.963 -

Mlig455_000572 {REF} {Length: 460} {NoTransDecoderORF} {RNA1509_41508} {RNA1310_1800.1} {RNA815_49293}

Mlig455_003191 {REF} {Length: 879} {NoTransDecoderORF} {RNA1509_47311} {RNA1310_1800.1} {RNA815_49293}

Mlig455_003290 {REF} {Length: 984} {NoTransDecoderORF} {RNA1509_39623} {RNA1310_1800.1} {RNA815_49293}

Mlig455_016496 {REF} {Length: 959} {RNA1509_39623} {RNA1310_1800.1} {RNA815_49293}

Mlig455_022341 {REF} {Length: 1260} {NoTransDecoderORF} {RNA1509_39623} {RNA1310_1800.1} {RNA815_49293}

Mlig455_023424 {REF} {Length: 1153} {NoTransDecoderORF} {RNA1509_39623} {RNA1310_1800.1} {RNA815_49293}

Mlig455_023450 {REF} {Length: 1739} {RNA1509_39623} {RNA1310_1800.1} {RNA815_49293}

Mlig455_032331 {REF} {Length: 855} {NoTransDecoderORF} {RNA1509_47311} {RNA1310_1800.1} {RNA815_49293}
11. MligTC455_23330 207 4.32 Mlig455_009407, Mlig455_036917

Neo: -

Age: -

 0.962 - - - - 0.962 -

Mlig455_009407 {REF} {Length: 5394} {Pfam: Innexin [PF00876.20, score=328.1]} {Dmel: FBgn0085387, shakB, shaking B, [Score=111, Expect=1e-26]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=220, Expect=2e-67]} {Smed: dd_Smed_v6_10766_0_1, dd_Smed_v6_10766_0_1, [Score=315, Expect=2e-103]} {RNA1509_48973} {RNA1310_18979.1} {RNA815_25805}

Mlig455_036917 {REF} {Length: 6111} {Pfam: Innexin [PF00876.20, score=327.2]} {Dmel: FBgn0085387, shakB, shaking B, [Score=110, Expect=1e-26]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=218, Expect=1e-66]} {Smed: dd_Smed_v6_10766_0_1, dd_Smed_v6_10766_0_1, [Score=318, Expect=9e-105]} {RNA1509_48973} {RNA1310_18979.1, RNA1509_48973} {RNA1509_48973, RNA815_25805}
12. MligTC455_54343 138 2.87 Mlig455_045793

Neo: -

Age: Down-Up-Down

 CCDC74B 0.961 - - - - 0.961 - Mlig455_045793 {REF} {Length: 1939} {TRANSSPLICED} {Pfam: Coiled-coil domain of unknown function [PF14916.8, score=48.3]; Coiled coil protein 74, C terminal [PF14917.8, score=28.5]} {Human: ENSG00000152076, CCDC74B, coiled-coil domain containing 74B, [Score=48.1, Expect=8e-06]; ENSG00000163040, CCDC74A, coiled-coil domain containing 74A, [Score=48.1, Expect=9e-06]} {Mouse: ENSMUSG00000041617, Ccdc74a, coiled-coil domain containing 74A, [RH, Score=48.5, Expect=3e-07]} {RNA1509_40595} {RNA1310_26197} {RNA815_7738.1}
13. MligTC455_06973 26 0.54 Mlig455_051910

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_051910 {REF} {Length: 355} {NoTransDecoderORF} {RNA1509_31190} {RNA1310_29297} {RNA815_21647}
14. MligTC455_15543 50 1.03 Mlig455_028167

Neo: -

Age: -

Region-enriched R2: 5.866/0.00492
Region-enriched R3: 4.230/0.03239

 ADRA2A 0.957 - - - - 0.957 - Mlig455_028167 {REF} {Length: 2816} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=224.6]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=49.7]; Olfactory receptor [PF13853.8, score=23.0]} {Human: ENSG00000150594, ADRA2A, adrenoceptor alpha 2A, [Score=205, Expect=1e-60]; ENSG00000274286, ADRA2B, adrenoceptor alpha 2B, [Score=199, Expect=1e-58]; ENSG00000149295, DRD2, dopamine receptor D2, [Score=196, Expect=2e-57]} {Mouse: ENSMUSG00000058620, Adra2b, adrenergic receptor, alpha 2b, [Score=209, Expect=2e-62]; ENSMUSG00000033717, Adra2a, adrenergic receptor, alpha 2a, [Score=208, Expect=6e-62]} {Dmel: FBgn0053517, Dop2R, Dopamine 2-like receptor, [Score=197, Expect=2e-55]} {Celegans: WBGene00004777, ser-2, Tyramine receptor Ser-2, [Score=242, Expect=4e-75]} {Smed: dd_Smed_v6_48706_0_1, dd_Smed_v6_48706_0_1, [Score=205, Expect=1e-61]} {RNA1310_29477}
15. MligTC455_30263 126 2.62 Mlig455_003389

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_003389 {REF} {Length: 5048} {NoTransDecoderORF} {RNA1509_31144, RNA1509_45963} {RNA1310_27681, RNA1509_45963} {RNA1509_45963, RNA815_5159.1}
16. MligTC455_38551 529 11.02 Mlig455_036301, Mlig455_036336

Neo: -

Age: -

Region-enriched R7: 1.577/0.04603

 0.955 - - - - 0.955 -

Mlig455_036301 {REF} {Length: 4016} {Smed: dd_Smed_v6_5715_0_1, dd_Smed_v6_5715_0_1, [Score=42.7, Expect=1e-05]} {RNA1509_49824} {RNA1310_24515.1, RNA1509_49824} {RNA1509_49824, RNA815_20644}

Mlig455_036336 {REF} {Length: 1215} {Smed: dd_Smed_v6_13174_0_1, dd_Smed_v6_13174_0_1, [Score=49.7, Expect=2e-07]} {RNA1509_49824} {RNA1310_24515.2} {RNA815_20644}
17. MligTC455_09111 22 0.45 Mlig455_008786

Neo: -

Age: -

Regeneration-enriched R3: 7.523
Regeneration-enriched R4: 7.465
Regeneration-enriched R5: 6.106
Regeneration-enriched R2: 5.668

 0.954 - - - - 0.954 - Mlig455_008786 {REF} {Length: 542} {NoTransDecoderORF} {RNA1509_11711} {RNA1310_125973} {RNA815_56213}
18. MligTC455_17365 70 1.45 Mlig455_036665, Mlig455_036678

Neo: -

Age: -

Region-enriched R4: 4.188/0.02374
Region-enriched R5: 3.646/0.03336

 0.954 - - - - 0.954 -

Mlig455_036665 {REF} {Length: 857} {RNA1310_56540}

Mlig455_036678 {REF} {Length: 857} {Pfam: Protein of unknown function (DUF615) [PF04751.16, score=18.8]} {RNA1310_56540}
19. MligTC455_28138 1190 24.79 Mlig455_022674, Mlig455_032517

Neo: -

Age: Up-Down-Down

 0.954 - - - - 0.954 -

Mlig455_022674 {REF} {Length: 3801} {TRANSSPLICED} {Smed: dd_Smed_v6_17025_0_1, dd_Smed_v6_17025_0_1, [Score=43.9, Expect=6e-06]} {RNA1509_59938} {RNA1310_850} {RNA815_1208.1}

Mlig455_032517 {REF} {Length: 3495} {TRANSSPLICED} {Smed: dd_Smed_v6_17025_0_1, dd_Smed_v6_17025_0_1, [Score=43.9, Expect=6e-06]} {RNA1509_1582} {RNA1310_850} {RNA815_1208.1}
20. MligTC455_12983 39 0.82 Mlig455_065472

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_065472 {REF} {Length: 1362} {RNA1310_112208}
21. MligTC455_30268 108 2.25 Mlig455_026672

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_026672 {REF} {Length: 4320} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=29.9]; Endonuclease-reverse transcriptase [PF14529.8, score=26.1]; PHD-finger [PF00628.31, score=24.9]} {RNA1509_5039} {RNA1310_554.1} {RNA815_3500.1}
22. MligTC455_30269 148 3.09 Mlig455_050984

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_050984 {REF} {Length: 3262} {Dmel: FBgn0036278, CrzR, Corazonin receptor, [Score=55.5, Expect=1e-09]} {RNA1509_5039} {RNA1310_3442.1} {RNA815_3500.1}
23. MligTC455_23781 123 2.56 Mlig455_009520

Neo: -

Age: -

 TRPC6 0.952 - - - - 0.952 - Mlig455_009520 {REF} {Length: 5364} {Pfam: Transient receptor ion channel II [PF08344.13, score=91.9]; Ion transport protein [PF00520.33, score=53.7]; Ankyrin repeats (3 copies) [PF12796.9, score=32.0]; Ankyrin repeat [PF13606.8, score=26.1]; Ankyrin repeat [PF00023.32, score=21.7]} {Human: ENSG00000137672, TRPC6, transient receptor potential cation channel subfamily C member 6, [Score=519, Expect=5e-166]; ENSG00000138741, TRPC3, transient receptor potential cation channel subfamily C member 3, [Score=517, Expect=2e-165]; ENSG00000069018, TRPC7, transient receptor potential cation channel subfamily C member 7, [Score=517, Expect=5e-166]} {Mouse: ENSMUSG00000021541, Trpc7, transient receptor potential cation channel, subfamily C, member 7, [Score=519, Expect=4e-167]; ENSMUSG00000027716, Trpc3, transient receptor potential cation channel, subfamily C, member 3, [Score=513, Expect=3e-164]; ENSMUSG00000031997, Trpc6, transient receptor potential cation channel, subfamily C, member 6, [Score=512, Expect=2e-163]} {Dmel: FBgn0032593, Trpgamma, Transient receptor potential cation channel gamma, [Score=459, Expect=7e-142]} {Celegans: WBGene00006614, trp-1, Transient-receptor-potential-like protein, [Score=441, Expect=5e-136]} {Smed: dd_Smed_v6_13048_0_2, dd_Smed_v6_13048_0_2, [RH, Score=1273, Expect=0.0]} {RNA1509_39636} {RNA1310_4675} {RNA815_13507.1}
24. MligTC455_43608 32 0.68 Mlig455_022119

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_022119 {REF} {Length: 1506} {NoTransDecoderORF} {RNA1509_46209} {RNA1310_74551} {RNA815_20255}
25. MligTC455_43131 121 2.51 Mlig455_042022

Neo: -

Age: Down-Down-Up

 ANK1 0.951 - - - - 0.951 - Mlig455_042022 {REF} {Length: 2609} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=59.5]; Ankyrin repeats (many copies) [PF13857.8, score=57.9]; Ankyrin repeats (many copies) [PF13637.8, score=55.3]; Ankyrin repeat [PF13606.8, score=44.4]; Ankyrin repeat [PF00023.32, score=40.3]; SOCS box [PF07525.18, score=31.4]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=67.0, Expect=2e-11]; ENSG00000145362, ANK2, ankyrin 2, [Score=66.2, Expect=3e-11]; ENSG00000151150, ANK3, ankyrin 3, [Score=64.7, Expect=1e-10]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=67.4, Expect=1e-11]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=64.7, Expect=1e-10]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=64.3, Expect=7e-11]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=57.8, Expect=6e-09]} {Smed: dd_Smed_v6_10835_0_1, dd_Smed_v6_10835_0_1, [Score=61.2, Expect=4e-10]} {RNA1509_37297} {RNA1310_14378} {RNA815_6651}
26. MligTC455_16211 12 0.25 Mlig455_043479

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_043479 {REF} {Length: 233} {NoTransDecoderORF} {RNA1310_89038} {RNA815_40556}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA