M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_22830

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_22830 80 1.68 Mlig455_009442

Neo: -

Age: -

 Mlig455_009442 {REF} {Length: 1081} {NoTransDecoderORF} {RNA1509_57421} {RNA1310_25119} {RNA815_11593}

Cumulative graph for MligTC455_22830

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.438 1.649 0.89374 1.00000
RegionR2 -0.551 1.649 0.60978 0.95778
RegionR3 0.001 1.649 0.98821 1.00000
RegionR4 0.828 1.649 0.37488 0.69863
RegionR5 -1.188 1.649 0.27566 0.60206
RegionR6 -0.562 1.649 0.55972 1.00000
RegionR7 0.107 1.649 0.91670 1.00000
RegionR8 1.803 1.649 0.07001 0.50734

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.498 1.649 0.64463 1.00000
RegenerationR2 -0.145 1.649 0.83214 0.99875
RegenerationR3 -1.568 1.649 0.05274 0.39651
RegenerationR4 -1.301 1.649 0.11345 0.51594
RegenerationR5 -0.18 1.649 0.81088 0.99178
RegenerationR6 -1.07 1.649 0.26619 0.61598
RegenerationBL -1.122 1.649 0.36834 0.73669
RegenerationTP -1.555 1.649 0.15344 0.57942


Genes with expression patterns similar to MligTC455_22830

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_22830 80 1.68 Mlig455_009442

Neo: -

Age: -

 5 1.000 1.000 1.000 - 1.000 1.000 Mlig455_009442 {REF} {Length: 1081} {NoTransDecoderORF} {RNA1509_57421} {RNA1310_25119} {RNA815_11593}
2. MligTC455_22837 484 10.08 Mlig455_005509, Mlig455_006648, Mlig455_006694, Mlig455_010631, Mlig455_023501, Mlig455_030951, Mlig455_032677

Neo: -

Age: Up-Down-Up

 4.855 0.999 0.996 0.996 - 0.945 0.919

Mlig455_005509 {REF} {Length: 1003} {TRANSSPLICED} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_006648 {REF} {Length: 2757} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_006694 {REF} {Length: 1368} {RNA1310_105426} {RNA815_46313}

Mlig455_010631 {REF} {Length: 1245} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_023501 {REF} {Length: 1139} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_030951 {REF} {Length: 1003} {TRANSSPLICED} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_032677 {REF} {Length: 1003} {TRANSSPLICED} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}
3. MligTC455_52790 69 1.44 Mlig455_031435

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.468

 KY 1.877 - - - - 0.984 0.893 Mlig455_031435 {REF} {Length: 2924} {Pfam: Transglutaminase-like superfamily [PF01841.21, score=54.4]} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [RH, Score=190, Expect=2e-51]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [RH, Score=190, Expect=2e-51]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=97.4, Expect=1e-20]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=96.3, Expect=8e-21]} {Smed: dd_Smed_v6_1109_0_1, dd_Smed_v6_1109_0_1, [Score=139, Expect=7e-34]} {RNA1509_41238} {RNA1310_9626} {RNA815_5945}
4. MligTC455_18111 16 0.34 Mlig455_041485, Mlig455_041517

Neo: -

Age: -

 SLC18A1, SLC18A3 0.994 - - - - 0.994 -

Mlig455_041485 {REF} {Length: 1888} {Pfam: Major Facilitator Superfamily [PF07690.18, score=26.8]; Sugar (and other) transporter [PF00083.26, score=20.1]} {Human: ENSG00000187714, SLC18A3, solute carrier family 18 member A3, [Score=78.2, Expect=2e-16]; ENSG00000165646, SLC18A2, solute carrier family 18 member A2, [Score=74.7, Expect=3e-15]} {Mouse: ENSMUSG00000036330, Slc18a1, solute carrier family 18 (vesicular monoamine), member 1, [Score=85.9, Expect=3e-19]} {Dmel: FBgn0260964, Vmat, Vesicular monoamine transporter, [Score=73.2, Expect=5e-15]} {Celegans: WBGene00000295, cat-1, [Score=72.4, Expect=6e-15]} {Smed: dd_Smed_v6_19744_0_1, dd_Smed_v6_19744_0_1, [Score=78.6, Expect=4e-17]} {RNA1509_39463} {RNA1310_63867.1} {RNA815_26569}

Mlig455_041517 {REF} {Length: 653} {Human: ENSG00000036565, SLC18A1, solute carrier family 18 member A1, [Score=69.7, Expect=8e-15]; ENSG00000165646, SLC18A2, solute carrier family 18 member A2, [Score=68.2, Expect=3e-14]} {Mouse: ENSMUSG00000025094, Slc18a2, solute carrier family 18 (vesicular monoamine), member 2, [Score=67.8, Expect=3e-14]; ENSMUSG00000036330, Slc18a1, solute carrier family 18 (vesicular monoamine), member 1, [Score=67.8, Expect=3e-14]} {Dmel: FBgn0260964, Vmat, Vesicular monoamine transporter, [Score=70.5, Expect=2e-15]} {RNA1509_39463} {RNA1310_136491} {RNA815_18100}
5. MligTC455_18474 9 0.2 Mlig455_062157

Neo: -

Age: -

 HCRTR2 0.978 - - - - 0.978 - Mlig455_062157 {REF} {Length: 1998} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=94.3]} {Human: ENSG00000137252, HCRTR2, hypocretin receptor 2, [Score=70.9, Expect=2e-12]} {Mouse: ENSMUSG00000032360, Hcrtr2, hypocretin (orexin) receptor 2, [Score=76.3, Expect=3e-14]} {Dmel: FBgn0037408, NPFR, Neuropeptide F receptor, [Score=48.9, Expect=8e-06]} {Celegans: WBGene00007006, npr-3, NeuroPeptide Receptor family, [Score=58.5, Expect=5e-09]} {Smed: dd_Smed_v6_29182_0_1, dd_Smed_v6_29182_0_1, [Score=75.9, Expect=8e-15]}
6. MligTC455_20428 37 0.78 Mlig455_050428

Neo: -

Age: Up-Down-Down

Region-enriched R2: 7.829/0.00010

 LRRN3 0.977 - - - - 0.977 - Mlig455_050428 {REF} {Length: 10329} {Pfam: Leucine rich repeat [PF13855.8, score=96.2]; Leucine Rich repeats (2 copies) [PF12799.9, score=63.4]; Immunoglobulin domain [PF13927.8, score=44.7]; Immunoglobulin I-set domain [PF07679.18, score=41.3]; Immunoglobulin domain [PF00047.27, score=31.4]; Leucine-rich repeat [PF14580.8, score=24.8]; Immunoglobulin V-set domain [PF07686.19, score=23.1]; Immunoglobulin domain [PF13895.8, score=22.9]; Leucine Rich Repeat [PF00560.35, score=20.8]} {Human: ENSG00000173114, LRRN3, leucine rich repeat neuronal 3, [RH, Score=114, Expect=2e-25]; ENSG00000174482, LINGO2, leucine rich repeat and Ig domain containing 2, [RH, Score=112, Expect=3e-25]; ENSG00000175928, LRRN1, leucine rich repeat neuronal 1, [RH, Score=111, Expect=2e-24]} {Mouse: ENSMUSG00000036295, Lrrn3, leucine rich repeat protein 3, neuronal, [RH, Score=113, Expect=2e-25]; ENSMUSG00000045083, Lingo2, leucine rich repeat and Ig domain containing 2, [RH, Score=110, Expect=1e-24]; ENSMUSG00000034648, Lrrn1, leucine rich repeat protein 1, neuronal, [RH, Score=108, Expect=5e-24]} {Dmel: FBgn0032479, CG16974, [Score=89.0, Expect=1e-17]} {Celegans: WBGene00020649, sma-10, Leucine-rich repeats and immunoglobulin-like domains protein sma-10, [Score=73.6, Expect=4e-13]} {RNA1509_34876} {RNA1310_313, RNA1509_34876} {RNA1509_34876, RNA815_2616}
7. MligTC455_41993 177 3.68 Mlig455_058555

Neo: -

Age: -

 SLC18A2 0.976 - - - - 0.976 - Mlig455_058555 {REF} {Length: 2488} {Pfam: Major Facilitator Superfamily [PF07690.18, score=160.2]} {Human: ENSG00000165646, SLC18A2, solute carrier family 18 member A2, [RH, Score=505, Expect=4e-173]} {Mouse: ENSMUSG00000025094, Slc18a2, solute carrier family 18 (vesicular monoamine), member 2, [RH, Score=506, Expect=9e-174]} {Dmel: FBgn0260964, Vmat, Vesicular monoamine transporter, [RH, Score=522, Expect=9e-179]} {Celegans: WBGene00000295, cat-1, [RH, Score=478, Expect=1e-162]} {Smed: dd_Smed_v6_16043_0_1, dd_Smed_v6_16043_0_1, [RH, Score=572, Expect=0.0]} {RNA1509_54526} {RNA1310_13917.1} {RNA815_24305}
8. MligTC455_22612 109 2.26 Mlig455_026956

Neo: -

Age: -

 FYN 0.974 - - - - 0.974 - Mlig455_026956 {REF} {Length: 4578} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=252.5]; Protein kinase domain [PF00069.27, score=163.9]; SH3 domain [PF00018.30, score=35.6]; Variant SH3 domain [PF07653.19, score=34.4]; SH2 domain [PF00017.26, score=33.2]; Variant SH3 domain [PF14604.8, score=30.8]; Bacterial SH3 domain [PF08239.13, score=24.4]; ABC1 atypical kinase-like domain [PF03109.18, score=18.9]; Kinase-like [PF14531.8, score=18.8]} {Human: ENSG00000010810, FYN, FYN proto-oncogene, Src family tyrosine kinase, [Score=285, Expect=4e-89]; ENSG00000101336, HCK, HCK proto-oncogene, Src family tyrosine kinase, [Score=275, Expect=6e-86]; ENSG00000182866, LCK, LCK proto-oncogene, Src family tyrosine kinase, [Score=272, Expect=1e-84]} {Mouse: ENSMUSG00000019843, Fyn, Fyn proto-oncogene, [Score=284, Expect=4e-89]; ENSMUSG00000000409, Lck, lymphocyte protein tyrosine kinase, [Score=275, Expect=1e-85]; ENSMUSG00000014932, Yes1, YES proto-oncogene 1, Src family tyrosine kinase, [Score=270, Expect=1e-83]} {Dmel: FBgn0262733, Src64B, Src oncogene at 64B, [Score=274, Expect=3e-85]} {Celegans: WBGene00005077, src-1, Tyrosine protein-kinase src-1, [Score=284, Expect=6e-90]} {Smed: dd_Smed_v6_3363_0_1, dd_Smed_v6_3363_0_1, [Score=310, Expect=9e-100]} {RNA1509_37079} {RNA1310_14637, RNA1509_37079} {RNA1509_37079, RNA815_4860}
9. MligTC455_37848 42 0.87 Mlig455_049400

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_049400 {REF} {Length: 2374} {RNA1509_58287} {RNA1310_1148.1} {RNA815_900}
10. MligTC455_25754 70 1.47 Mlig455_050393

Neo: -

Age: -

Region-enriched R4: 7.205/0.00712

 0.967 - - 0.967 - - - Mlig455_050393 {REF} {Length: 1387} {RNA1509_57365} {RNA1310_58913} {RNA815_32443}
11. MligTC455_28230 71 1.48 Mlig455_017278

Neo: -

Age: Down-Down-Up

 0.965 - - - - - 0.965 Mlig455_017278 {REF} {Length: 1528} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_22796.1}
12. MligTC455_03624 8 0.16 Mlig455_024120

Neo: -

Age: -

 UNC13B 0.96 - - - - 0.960 - Mlig455_024120 {REF} {Length: 1487} {Pfam: MUN domain [PF06292.19, score=280.3]; C2 domain [PF00168.32, score=113.9]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=39.3]} {Human: ENSG00000198722, UNC13B, unc-13 homolog B, [Score=1077, Expect=0.0]; ENSG00000130477, UNC13A, unc-13 homolog A, [Score=1046, Expect=0.0]} {Mouse: ENSMUSG00000028456, Unc13b, unc-13 homolog B, [Score=1073, Expect=0.0]; ENSMUSG00000034799, Unc13a, unc-13 homolog A, [Score=1050, Expect=0.0]} {Dmel: FBgn0025726, unc-13, [Score=1112, Expect=0.0]} {Celegans: WBGene00006752, unc-13, Phorbol ester/diacylglycerol-binding protein unc-13, [Score=984, Expect=0.0]} {Smed: dd_Smed_v6_11394_0_4, dd_Smed_v6_11394_0_4, [Score=1036, Expect=0.0]}
13. MligTC455_14501 55 1.15 Mlig455_047255

Neo: Int S/G2/M

Age: -

Region-enriched R5: 2.570/0.00646

 0.958 - - - - 0.958 - Mlig455_047255 {REF} {Length: 1057} {TRANSSPLICED} {RNA1509_21707, RNA1509_56030} {RNA1310_23619, RNA1509_21707, RNA1509_56030} {RNA1509_21707, RNA1509_56030, RNA815_11671}
14. MligTC455_35752 56 1.18 Mlig455_056840

Neo: -

Age: -

Region-enriched R4: 4.574/0.02705

 MFSD6 0.958 - - - - - 0.958 Mlig455_056840 {REF} {Length: 4246} {Pfam: MFS_1 like family [PF12832.9, score=290.4]; Major Facilitator Superfamily [PF07690.18, score=66.5]; Nucleoside H+ symporter [PF03825.18, score=37.1]; LacY proton/sugar symporter [PF01306.21, score=20.1]; MFS/sugar transport protein [PF13347.8, score=19.7]} {Human: ENSG00000151690, MFSD6, major facilitator superfamily domain containing 6, [RH, Score=263, Expect=2e-76]} {Mouse: ENSMUSG00000041439, Mfsd6, major facilitator superfamily domain containing 6, [RH, Score=264, Expect=7e-79]} {Dmel: FBgn0033958, jef, jet fuel, [RH, Score=408, Expect=9e-132]} {Celegans: WBGene00020051, R13A5.9, [RH, Score=283, Expect=1e-85]} {Smed: dd_Smed_v6_10640_0_1, dd_Smed_v6_10640_0_1, [RH, Score=522, Expect=8e-178]} {RNA1509_27602} {RNA1310_8507} {RNA815_3634}
15. MligTC455_21210 58 1.21 Mlig455_054815, Mlig455_054824

Neo: -

Age: -

 0.957 - - - - 0.957 -

Mlig455_054815 {REF} {Length: 1627} {Celegans: WBGene00044176, C30G7.2, [Score=80.9, Expect=2e-19]} {Smed: dd_Smed_v6_8948_0_1, dd_Smed_v6_8948_0_1, [RH, Score=90.9, Expect=9e-24]} {RNA1509_36146} {RNA1310_58910} {RNA815_43112}

Mlig455_054824 {REF} {Length: 2264} {Celegans: WBGene00044176, C30G7.2, [Score=80.9, Expect=2e-19]} {Smed: dd_Smed_v6_8948_0_1, dd_Smed_v6_8948_0_1, [RH, Score=90.9, Expect=9e-24]} {RNA1509_36146} {RNA1310_58910} {RNA815_43112}
16. MligTC455_08628 10 0.2 Mlig455_036717

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_036717 {REF} {Length: 755} {NoTransDecoderORF} {RNA1310_111783}
17. MligTC455_43502 87 1.81 Mlig455_049275, Mlig455_050621

Neo: -

Age: Down-Down-Up

Region-enriched R8: 4.055/0.04204

 GPR139 0.956 - - - - 0.956 -

Mlig455_049275 {REF} {Length: 1973} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=70.2]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=40.7]} {Human: ENSG00000180269, GPR139, G protein-coupled receptor 139, [Score=51.2, Expect=2e-06]} {Mouse: ENSMUSG00000066197, Gpr139, G protein-coupled receptor 139, [Score=49.7, Expect=3e-06]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=73.6, Expect=8e-14]} {Celegans: WBGene00016265, trhr-1, Thyrotropin-Releasing Hormone Receptor, [Score=64.3, Expect=4e-11]} {Smed: dd_Smed_v6_9550_0_1, dd_Smed_v6_9550_0_1, [Score=167, Expect=2e-47]} {RNA1509_46026} {RNA1310_15406} {RNA815_32015}

Mlig455_050621 {REF} {Length: 2103} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=70.1]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=39.9]} {Human: ENSG00000180269, GPR139, G protein-coupled receptor 139, [Score=49.3, Expect=6e-06]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=72.8, Expect=1e-13]} {Celegans: WBGene00016265, trhr-1, Thyrotropin-Releasing Hormone Receptor, [Score=60.8, Expect=5e-10]} {Smed: dd_Smed_v6_9550_0_1, dd_Smed_v6_9550_0_1, [RH, Score=168, Expect=7e-48]} {RNA1509_7660} {RNA1310_15406} {RNA815_32015}
18. MligTC455_48175 77 1.61 Mlig455_007182

Neo: -

Age: -

 ASIC5 0.956 - - - - 0.956 - Mlig455_007182 {REF} {Length: 3490} {TRANSSPLICED} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=151.3]; WSC domain [PF01822.21, score=34.7]} {Human: ENSG00000256394, ASIC5, acid sensing ion channel subunit family member 5, [Score=51.6, Expect=7e-06]} {Celegans: WBGene00003174, mec-10, Degenerin mec-10, [Score=55.5, Expect=2e-07]} {Smed: dd_Smed_v6_8949_0_1, dd_Smed_v6_8949_0_1, [Score=67.0, Expect=3e-11]} {RNA1310_41558} {RNA815_42910}
19. MligTC455_50492 117 2.44 Mlig455_025367, Mlig455_025419

Neo: -

Age: -

 DPP6 0.95 - - - - 0.950 -

Mlig455_025367 {REF} {Length: 6334} {Pfam: Dipeptidyl peptidase IV (DPP IV) N-terminal region [PF00930.23, score=212.5]; Prolyl oligopeptidase family [PF00326.23, score=141.8]; Dienelactone hydrolase family [PF01738.20, score=20.7]; Putative esterase [PF00756.22, score=19.5]} {Human: ENSG00000282974, DPP6, dipeptidyl peptidase like 6, [Score=345, Expect=2e-105]; ENSG00000130226, DPP6, dipeptidyl peptidase like 6, [Score=345, Expect=2e-105]} {Mouse: ENSMUSG00000061576, Dpp6, dipeptidylpeptidase 6, [RH, Score=352, Expect=3e-108]} {Dmel: FBgn0031741, CG11034, [RH, Score=294, Expect=2e-87]} {Celegans: WBGene00001054, dpf-1, Dipeptidyl peptidase family member 1, [RH, Score=258, Expect=4e-74]} {Smed: dd_Smed_v6_9183_0_1, dd_Smed_v6_9183_0_1, [Score=444, Expect=2e-143]} {RNA1509_12435} {RNA1310_3631.2, RNA1509_12435} {RNA1509_12435, RNA815_1805}

Mlig455_025419 {REF} {Length: 3421} {Pfam: Dipeptidyl peptidase IV (DPP IV) N-terminal region [PF00930.23, score=211.8]; Prolyl oligopeptidase family [PF00326.23, score=141.7]; Dienelactone hydrolase family [PF01738.20, score=20.4]; Putative esterase [PF00756.22, score=19.3]} {Human: ENSG00000282974, DPP6, dipeptidyl peptidase like 6, [RH, Score=348, Expect=2e-106]; ENSG00000130226, DPP6, dipeptidyl peptidase like 6, [RH, Score=348, Expect=2e-106]} {Mouse: ENSMUSG00000061576, Dpp6, dipeptidylpeptidase 6, [RH, Score=357, Expect=1e-109]} {Dmel: FBgn0031741, CG11034, [RH, Score=293, Expect=1e-86]} {Celegans: WBGene00001054, dpf-1, Dipeptidyl peptidase family member 1, [RH, Score=259, Expect=4e-74]} {Smed: dd_Smed_v6_9183_0_1, dd_Smed_v6_9183_0_1, [Score=442, Expect=4e-142]} {RNA1509_32365} {RNA1310_3631.1} {RNA815_1805}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA