Data search
Results for MligTC455_23008
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_23008 | 404 | 8.42 | Mlig455_040215 | Neo: - Age: - |
TRIM3 | Mlig455_040215 {REF} {Length: 4174} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=53.0]; Filamin/ABP280 repeat [PF00630.21, score=34.4]; zinc-RING finger domain [PF14634.8, score=34.4]; RING-type zinc-finger [PF13445.8, score=30.6]; Ring finger domain [PF13639.8, score=28.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=26.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.7]; B-box zinc finger [PF00643.26, score=21.4]; zinc finger of C3HC4-type, RING [PF15227.8, score=19.7]; Prokaryotic RING finger family 4 [PF14447.8, score=18.7]; RING/Ubox like zinc-binding domain [PF14570.8, score=18.5]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=168, Expect=3e-43]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=166, Expect=2e-42]} {Dmel: FBgn0265356, tn, thin, [Score=64.3, Expect=3e-10]} {Celegans: WBGene00003599, nhl-3, NHL (Ring finger b-box coiled coil) domain containing, [RH, Score=334, Expect=3e-104]} {RNA1509_19389, RNA1509_36179} {RNA1310_9271, RNA1509_19389, RNA1509_36179} {RNA1509_19389, RNA1509_36179, RNA815_11075} |
Cumulative graph for MligTC455_23008
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -5.5 | 3.438 | 0.19703 | 0.83292 | |
| RegionR2 | 0.075 | 3.438 | 0.82267 | 1.00000 | |
| RegionR3 | 0.512 | 3.438 | 0.54927 | 1.00000 | |
| RegionR4 | 1.937 | 3.438 | 0.00869 | 0.05491 | |
| RegionR5 | 0.779 | 3.438 | 0.31416 | 0.65377 | |
| RegionR6 | 0.481 | 3.438 | 0.57589 | 1.00000 | |
| RegionR7 | 0.542 | 3.438 | 0.56597 | 1.00000 | |
| RegionR8 | 1.173 | 3.438 | 0.19849 | 0.79542 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.278 | 3.438 | 1.00000 | 1.00000 | |
| RegenerationR2 | -0.353 | 3.438 | 0.39037 | 0.80853 | |
| RegenerationR3 | -0.294 | 3.438 | 0.52300 | 0.86847 | |
| RegenerationR4 | -1.01 | 3.438 | 0.04107 | 0.32633 | |
| RegenerationR5 | 0.124 | 3.438 | 0.76593 | 0.97765 | |
| RegenerationR6 | -0.387 | 3.438 | 0.43962 | 0.76362 | |
| RegenerationBL | 0.831 | 3.438 | 0.10695 | 0.38605 | |
| RegenerationTP | -0.496 | 3.438 | 0.41755 | 0.84215 |
Genes with expression patterns similar to MligTC455_23008
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_23008 | 404 | 8.42 | Mlig455_040215 | Neo: - Age: - |
TRIM3 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_040215 {REF} {Length: 4174} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=53.0]; Filamin/ABP280 repeat [PF00630.21, score=34.4]; zinc-RING finger domain [PF14634.8, score=34.4]; RING-type zinc-finger [PF13445.8, score=30.6]; Ring finger domain [PF13639.8, score=28.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=26.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.7]; B-box zinc finger [PF00643.26, score=21.4]; zinc finger of C3HC4-type, RING [PF15227.8, score=19.7]; Prokaryotic RING finger family 4 [PF14447.8, score=18.7]; RING/Ubox like zinc-binding domain [PF14570.8, score=18.5]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=168, Expect=3e-43]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=166, Expect=2e-42]} {Dmel: FBgn0265356, tn, thin, [Score=64.3, Expect=3e-10]} {Celegans: WBGene00003599, nhl-3, NHL (Ring finger b-box coiled coil) domain containing, [RH, Score=334, Expect=3e-104]} {RNA1509_19389, RNA1509_36179} {RNA1310_9271, RNA1509_19389, RNA1509_36179} {RNA1509_19389, RNA1509_36179, RNA815_11075} |
| 2. | MligTC455_50877 | 133 | 2.76 | Mlig455_023008 | Neo: - Age: - Regeneration-upregulated BL: 5.778 Regeneration-enriched BL: 5.778 |
1.806 | - | - | - | - | 0.980 | 0.826 | Mlig455_023008 {REF} {Length: 819} {TRANSSPLICED} {RNA1310_74407} {RNA815_32847.1} | |
| 3. | MligTC455_42622 | 818 | 17.05 | Mlig455_002600 | Neo: Int S/G2/M Age: Down-Up-Down Regeneration-upregulated BL: 1.616 Regeneration-enriched BL: 1.616 |
RBM17 | 1.715 | - | - | - | - | 0.743 | 0.972 | Mlig455_002600 {REF} {Length: 1563} {TRANSSPLICED} {Pfam: G-patch domain [PF01585.25, score=48.2]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=31.0]} {Human: ENSG00000134453, RBM17, RNA binding motif protein 17, [RH, Score=199, Expect=4e-59]} {Mouse: ENSMUSG00000037197, Rbm17, RNA binding motif protein 17, [RH, Score=197, Expect=7e-59]} {Dmel: FBgn0086683, Spf45, [RH, Score=160, Expect=5e-45]} {Celegans: WBGene00010233, F58B3.7, [RH, Score=119, Expect=4e-30]} {Smed: dd_Smed_v6_4530_0_1, dd_Smed_v6_4530_0_1, [RH, Score=234, Expect=5e-74]} {RNA1509_10111} {RNA1310_21374, RNA1509_10111} {RNA1509_10111, RNA815_7888} |
| 4. | MligTC455_49080 | 427 | 8.9 | Mlig455_053818 | Neo: - Age: Down-Up-Down |
CANX | 1.71 | - | 0.760 | - | - | - | 0.950 | Mlig455_053818 {REF} {Length: 2119} {TRANSSPLICED} {Pfam: Calreticulin family [PF00262.20, score=472.5]} {Human: ENSG00000127022, CANX, calnexin, [Score=481, Expect=8e-164]; ENSG00000283777, CANX, calnexin, [Score=481, Expect=8e-164]} {Mouse: ENSMUSG00000020368, Canx, calnexin, [Score=471, Expect=6e-160]} {Dmel: FBgn0015622, Cnx99A, Calnexin 99A, [Score=409, Expect=7e-136]} {Celegans: WBGene00000567, cnx-1, Calnexin, [Score=399, Expect=9e-132]} {Smed: dd_Smed_v6_632_0_1, dd_Smed_v6_632_0_1, [Score=524, Expect=0.0]} {RNA1509_13172, RNA1509_44465, RNA1509_45014, RNA1509_58386} {RNA1310_13618.1, RNA1509_13172, RNA1509_44465, RNA1509_45014, RNA1509_58386} {RNA1509_13172, RNA1509_44465, RNA1509_45014, RNA1509_58386, RNA815_14640} |
| 5. | MligTC455_27422 | 441 | 9.18 | Mlig455_040999 | Neo: - Age: - |
ATF7 | 1.703 | - | - | - | 0.752 | - | 0.951 | Mlig455_040999 {REF} {Length: 3724} {TRANSSPLICED} {Pfam: bZIP transcription factor [PF00170.23, score=30.3]; Basic region leucine zipper [PF07716.17, score=24.9]; Phlebovirus nonstructural protein NS-M [PF07246.13, score=24.6]; bZIP Maf transcription factor [PF03131.19, score=22.6]} {Human: ENSG00000170653, ATF7, activating transcription factor 7, [Score=73.6, Expect=3e-13]; ENSG00000267281, AC023509.3, novel protein, [Score=73.2, Expect=4e-13]; ENSG00000115966, ATF2, activating transcription factor 2, [Score=72.8, Expect=6e-13]; ENSG00000146592, CREB5, cAMP responsive element binding protein 5, [Score=70.1, Expect=3e-12]} {Mouse: ENSMUSG00000099083, Atf7, activating transcription factor 7, [Score=73.6, Expect=2e-13]; ENSMUSG00000052414, Gm28047, predicted gene, 28047, [Score=72.4, Expect=5e-13]; ENSMUSG00000027104, Atf2, activating transcription factor 2, [Score=72.0, Expect=7e-13]} {Dmel: FBgn0265784, CrebB, Cyclic-AMP response element binding protein B, [Score=50.4, Expect=3e-06]} {Celegans: WBGene00000793, crh-1, CREB Homolog; Cyclic AMP-response element binding protein 1 gamma 2, [Score=55.8, Expect=5e-08]} {RNA1509_19991, RNA1509_49323} {RNA1310_14708, RNA1509_19991, RNA1509_49323} {RNA1509_19991, RNA1509_49323, RNA815_18843.1} |
| 6. | MligTC455_17708 | 297 | 6.19 | Mlig455_067350 | Neo: - Age: - |
SIN3B | 0.966 | - | - | - | - | - | 0.966 | Mlig455_067350 {REF} {Length: 6212} {TRANSSPLICED} {Pfam: C-terminal domain of Sin3a protein [PF16879.7, score=140.7]; Paired amphipathic helix repeat [PF02671.23, score=115.5]; Sin3 family co-repressor [PF08295.14, score=111.5]} {Human: ENSG00000127511, SIN3B, SIN3 transcription regulator family member B, [RH, Score=500, Expect=1e-153]} {Mouse: ENSMUSG00000031622, Sin3b, transcriptional regulator, SIN3B (yeast), [RH, Score=507, Expect=1e-156]} {Dmel: FBgn0022764, Sin3A, [RH, Score=302, Expect=9e-83]} {Celegans: WBGene00004117, sin-3, Paired amphipathic helix protein sin-3, [RH, Score=113, Expect=9e-25]} {Smed: dd_Smed_v6_7034_0_1, dd_Smed_v6_7034_0_1, [RH, Score=310, Expect=3e-86]} {RNA1509_12438} {RNA1310_4111, RNA1509_12438} {RNA1509_12438, RNA815_5481} |
| 7. | MligTC455_46118 | 332 | 6.93 | Mlig455_042899 | Neo: - Age: Down-Down-Up |
ARPC5 | 0.964 | - | - | - | - | - | 0.964 | Mlig455_042899 {REF} {Length: 3200} {TRANSSPLICED} {Pfam: ARP2/3 complex 16 kDa subunit (p16-Arc) [PF04699.16, score=101.1]} {Human: ENSG00000162704, ARPC5, actin related protein 2/3 complex subunit 5, [Score=99.8, Expect=6e-24]} {Mouse: ENSMUSG00000008475, Arpc5, actin related protein 2/3 complex, subunit 5, [Score=99.0, Expect=8e-24]} {Dmel: FBgn0031437, Arpc5, Actin-related protein 2/3 complex, subunit 5, [Score=103, Expect=1e-25]} {Smed: dd_Smed_v6_781_0_1, dd_Smed_v6_781_0_1, [Score=79.7, Expect=2e-17]} {RNA1509_17990, RNA1509_51665} {RNA1310_17080, RNA1509_51665} {RNA1509_51665, RNA815_4362.1} |
| 8. | MligTC455_31950 | 515 | 10.73 | Mlig455_034849 | Neo: - Age: - |
KCTD1 | 0.958 | - | - | - | - | - | 0.958 | Mlig455_034849 {REF} {Length: 3140} {TRANSSPLICED} {Human: ENSG00000134504, KCTD1, potassium channel tetramerization domain containing 1, [Score=68.2, Expect=9e-12]} {Mouse: ENSMUSG00000036225, Kctd1, potassium channel tetramerisation domain containing 1, [Score=68.6, Expect=4e-12]} {RNA1509_44313} {RNA1310_16403.1} {RNA815_10559.1} |
| 9. | MligTC455_41937 | 430 | 8.96 | Mlig455_035155 | Neo: - Age: Down-Up-Up Region-enriched R6: 2.360/0.00459 |
TSTD1 | 0.956 | - | - | - | 0.956 | - | - | Mlig455_035155 {REF} {Length: 1146} {Pfam: Rhodanese-like domain [PF00581.22, score=49.0]} {Human: ENSG00000215845, TSTD1, thiosulfate sulfurtransferase like domain containing 1, [RH, Score=66.2, Expect=2e-14]} {Mouse: ENSMUSG00000103711, Tstd1, thiosulfate sulfurtransferase (rhodanese)-like domain containing 1, [RH, Score=60.8, Expect=2e-12]} {Dmel: FBgn0039145, CG6000, [RH, Score=70.9, Expect=3e-16]} {Smed: dd_Smed_v6_530_0_1, dd_Smed_v6_530_0_1, [Score=46.6, Expect=5e-07]} {RNA1509_33223} {RNA1310_44714} {RNA815_24196.1} |
| 10. | MligTC455_21403 | 312 | 6.51 | Mlig455_004043 | Neo: - Age: logFC(26M/2M)=0.530 |
SLC38A10 | 0.954 | - | - | - | - | - | 0.954 | Mlig455_004043 {REF} {Length: 2367} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=175.6]; Tryptophan/tyrosine permease family [PF03222.15, score=30.3]} {Human: ENSG00000157637, SLC38A10, solute carrier family 38 member 10, [RH, Score=290, Expect=8e-85]} {Mouse: ENSMUSG00000061306, Slc38a10, solute carrier family 38, member 10, [RH, Score=300, Expect=5e-89]} {Dmel: FBgn0050394, CG30394, [RH, Score=249, Expect=9e-72]} {Celegans: WBGene00021765, Y51F10.4, [RH, Score=206, Expect=6e-58]} {Smed: dd_Smed_v6_11525_0_1, dd_Smed_v6_11525_0_1, [RH, Score=216, Expect=1e-63]} {RNA1509_30902} {RNA1310_4708.1, RNA1509_30902} {RNA1509_30902, RNA815_535.1} |
| 11. | MligTC455_25223 | 281 | 5.85 | Mlig455_053623 | Neo: - Age: - |
ESF1 | 0.954 | - | - | - | - | - | 0.954 | Mlig455_053623 {REF} {Length: 2309} {TRANSSPLICED} {Pfam: NUC153 domain [PF08159.14, score=41.6]; CDC45-like protein [PF02724.16, score=22.8]; Nop14-like family [PF04147.14, score=20.9]; SDA1 [PF05285.14, score=20.3]} {Human: ENSG00000089048, ESF1, ESF1 nucleolar pre-rRNA processing protein homolog, [RH, Score=142, Expect=9e-35]} {Mouse: ENSMUSG00000045624, Esf1, ESF1 nucleolar pre-rRNA processing protein homolog, [RH, Score=144, Expect=1e-35]} {Dmel: FBgn0024364, CG11417, [Score=184, Expect=2e-49]} {Smed: dd_Smed_v6_12089_0_1, dd_Smed_v6_12089_0_1, [Score=75.1, Expect=3e-14]} {RNA1509_37466, RNA1509_48220, RNA1509_54928} {RNA1310_10403, RNA1509_37466, RNA1509_48220, RNA1509_54928} {RNA1509_37466, RNA1509_48220, RNA1509_54928, RNA815_3468} |
| 12. | MligTC455_31949 | 519 | 10.81 | Mlig455_029705 | Neo: - Age: - |
TMEM8B | 0.952 | - | - | - | - | - | 0.952 | Mlig455_029705 {REF} {Length: 4061} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF3522) [PF12036.10, score=159.8]} {Human: ENSG00000137103, TMEM8B, transmembrane protein 8B, [RH, Score=140, Expect=9e-35]; ENSG00000129925, TMEM8A, transmembrane protein 8A, [RH, Score=136, Expect=2e-32]} {Mouse: ENSMUSG00000024180, Tmem8, transmembrane protein 8, [RH, Score=143, Expect=7e-35]; ENSMUSG00000078716, Tmem8b, transmembrane protein 8B, [RH, Score=139, Expect=1e-34]} {Dmel: FBgn0039290, CG13654, [RH, Score=126, Expect=2e-29]} {RNA1509_10869} {RNA1310_3453.1} {RNA815_2601.1} |
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