M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49080

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49080 427 8.90 Mlig455_053818

Neo: -

Age: Down-Up-Down

 CANX Mlig455_053818 {REF} {Length: 2119} {TRANSSPLICED} {Pfam: Calreticulin family [PF00262.20, score=472.5]} {Human: ENSG00000127022, CANX, calnexin, [Score=481, Expect=8e-164]; ENSG00000283777, CANX, calnexin, [Score=481, Expect=8e-164]} {Mouse: ENSMUSG00000020368, Canx, calnexin, [Score=471, Expect=6e-160]} {Dmel: FBgn0015622, Cnx99A, Calnexin 99A, [Score=409, Expect=7e-136]} {Celegans: WBGene00000567, cnx-1, Calnexin, [Score=399, Expect=9e-132]} {Smed: dd_Smed_v6_632_0_1, dd_Smed_v6_632_0_1, [Score=524, Expect=0.0]} {RNA1509_13172, RNA1509_44465, RNA1509_45014, RNA1509_58386} {RNA1310_13618.1, RNA1509_13172, RNA1509_44465, RNA1509_45014, RNA1509_58386} {RNA1509_13172, RNA1509_44465, RNA1509_45014, RNA1509_58386, RNA815_14640}

Cumulative graph for MligTC455_49080

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.608 3.548 0.19584 0.83091
RegionR2 0.381 3.548 0.68904 1.00000
RegionR3 1.001 3.548 0.26577 0.81017
RegionR4 0.939 3.548 0.36920 0.69247
RegionR5 1.448 3.548 0.05904 0.21093
RegionR6 0.392 3.548 0.66434 1.00000
RegionR7 0.669 3.548 0.53054 1.00000
RegionR8 0.777 3.548 0.53305 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.785 3.548 0.09405 0.80334
RegenerationR2 0.546 3.548 0.38441 0.80460
RegenerationR3 -0.13 3.548 0.84357 0.99585
RegenerationR4 -0.327 3.548 0.65051 0.93357
RegenerationR5 -0.117 3.548 0.84815 1.00000
RegenerationR6 0.453 3.548 0.50849 0.81211
RegenerationBL 0.721 3.548 0.37274 0.74107
RegenerationTP -0.429 3.548 0.62787 0.97615


Genes with expression patterns similar to MligTC455_49080

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49080 427 8.9 Mlig455_053818

Neo: -

Age: Down-Up-Down

 CANX 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_053818 {REF} {Length: 2119} {TRANSSPLICED} {Pfam: Calreticulin family [PF00262.20, score=472.5]} {Human: ENSG00000127022, CANX, calnexin, [Score=481, Expect=8e-164]; ENSG00000283777, CANX, calnexin, [Score=481, Expect=8e-164]} {Mouse: ENSMUSG00000020368, Canx, calnexin, [Score=471, Expect=6e-160]} {Dmel: FBgn0015622, Cnx99A, Calnexin 99A, [Score=409, Expect=7e-136]} {Celegans: WBGene00000567, cnx-1, Calnexin, [Score=399, Expect=9e-132]} {Smed: dd_Smed_v6_632_0_1, dd_Smed_v6_632_0_1, [Score=524, Expect=0.0]} {RNA1509_13172, RNA1509_44465, RNA1509_45014, RNA1509_58386} {RNA1310_13618.1, RNA1509_13172, RNA1509_44465, RNA1509_45014, RNA1509_58386} {RNA1509_13172, RNA1509_44465, RNA1509_45014, RNA1509_58386, RNA815_14640}
2. MligTC455_48832 175 3.64 Mlig455_049173

Neo: -

Age: -

Region-enriched R5: 2.493/0.03133

Regeneration-upregulated BL: 4.384

Regeneration-enriched BL: 4.384

 1.748 - - - 0.789 - 0.959 Mlig455_049173 {REF} {Length: 2999} {RNA1509_10362} {RNA1310_2269.1} {RNA815_8540}
3. MligTC455_42622 818 17.05 Mlig455_002600

Neo: Int S/G2/M

Age: Down-Up-Down

Regeneration-upregulated BL: 1.616

Regeneration-enriched BL: 1.616

 RBM17 1.718 - - 0.751 - - 0.967 Mlig455_002600 {REF} {Length: 1563} {TRANSSPLICED} {Pfam: G-patch domain [PF01585.25, score=48.2]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=31.0]} {Human: ENSG00000134453, RBM17, RNA binding motif protein 17, [RH, Score=199, Expect=4e-59]} {Mouse: ENSMUSG00000037197, Rbm17, RNA binding motif protein 17, [RH, Score=197, Expect=7e-59]} {Dmel: FBgn0086683, Spf45, [RH, Score=160, Expect=5e-45]} {Celegans: WBGene00010233, F58B3.7, [RH, Score=119, Expect=4e-30]} {Smed: dd_Smed_v6_4530_0_1, dd_Smed_v6_4530_0_1, [RH, Score=234, Expect=5e-74]} {RNA1509_10111} {RNA1310_21374, RNA1509_10111} {RNA1509_10111, RNA815_7888}
4. MligTC455_23008 404 8.42 Mlig455_040215

Neo: -

Age: -

 TRIM3 1.71 - 0.760 - - - 0.950 Mlig455_040215 {REF} {Length: 4174} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=53.0]; Filamin/ABP280 repeat [PF00630.21, score=34.4]; zinc-RING finger domain [PF14634.8, score=34.4]; RING-type zinc-finger [PF13445.8, score=30.6]; Ring finger domain [PF13639.8, score=28.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=26.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=23.7]; B-box zinc finger [PF00643.26, score=21.4]; zinc finger of C3HC4-type, RING [PF15227.8, score=19.7]; Prokaryotic RING finger family 4 [PF14447.8, score=18.7]; RING/Ubox like zinc-binding domain [PF14570.8, score=18.5]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=168, Expect=3e-43]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=166, Expect=2e-42]} {Dmel: FBgn0265356, tn, thin, [Score=64.3, Expect=3e-10]} {Celegans: WBGene00003599, nhl-3, NHL (Ring finger b-box coiled coil) domain containing, [RH, Score=334, Expect=3e-104]} {RNA1509_19389, RNA1509_36179} {RNA1310_9271, RNA1509_19389, RNA1509_36179} {RNA1509_19389, RNA1509_36179, RNA815_11075}
5. MligTC455_52442 73 1.53 Mlig455_007385

Neo: -

Age: -

 0.966 - - - 0.966 - - Mlig455_007385 {REF} {Length: 1068} {NoTransDecoderORF} {RNA1310_134979}
6. MligTC455_42337 457 9.52 Mlig455_051728, Mlig455_051751

Neo: -

Age: -

Region-enriched R2: 2.454/0.02671

 DTNA 0.96 - - - - 0.960 -

Mlig455_051728 {REF} {Length: 3387} {TRANSSPLICED} {Pfam: EF hand [PF09068.13, score=47.3]; EF-hand [PF09069.13, score=43.8]; Zinc finger, ZZ type [PF00569.19, score=39.7]; C1 domain [PF03107.18, score=25.4]} {Human: ENSG00000134769, DTNA, dystrobrevin alpha, [RH, Score=230, Expect=4e-66]} {Mouse: ENSMUSG00000024302, Dtna, dystrobrevin alpha, [RH, Score=227, Expect=4e-65]} {Dmel: FBgn0033739, Dyb, Dystrobrevin, [RH, Score=199, Expect=4e-54]} {Celegans: WBGene00001115, dyb-1, Dystrobrevin-1, [RH, Score=177, Expect=2e-47]} {Smed: dd_Smed_v6_12275_0_1, dd_Smed_v6_12275_0_1, [RH, Score=215, Expect=1e-58]} {RNA1509_17518, RNA1509_55327} {RNA1310_10732.1, RNA1509_55327} {RNA1509_55327, RNA815_3713}

Mlig455_051751 {REF} {Length: 3409} {TRANSSPLICED} {Pfam: EF hand [PF09068.13, score=45.6]; EF-hand [PF09069.13, score=43.8]; Zinc finger, ZZ type [PF00569.19, score=39.7]; C1 domain [PF03107.18, score=25.4]} {Human: ENSG00000134769, DTNA, dystrobrevin alpha, [RH, Score=248, Expect=2e-71]} {Mouse: ENSMUSG00000024302, Dtna, dystrobrevin alpha, [RH, Score=249, Expect=7e-72]} {Dmel: FBgn0033739, Dyb, Dystrobrevin, [RH, Score=199, Expect=4e-54]} {Celegans: WBGene00001115, dyb-1, Dystrobrevin-1, [RH, Score=177, Expect=2e-47]} {Smed: dd_Smed_v6_12275_0_1, dd_Smed_v6_12275_0_1, [RH, Score=215, Expect=1e-58]} {RNA1509_17518} {RNA1310_10732.1, RNA1509_17518} {RNA1509_17518, RNA815_3713}
7. MligTC455_39802 144 3 Mlig455_018704

Neo: -

Age: Down-Up-Up

 NDUFAF3 0.952 - - - - - 0.952 Mlig455_018704 {REF} {Length: 1152} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF498/DUF598) [PF04430.16, score=76.3]} {Human: ENSG00000178057, NDUFAF3, NADH:ubiquinone oxidoreductase complex assembly factor 3, [RH, Score=76.3, Expect=4e-16]} {Mouse: ENSMUSG00000070283, Ndufaf3, NADH:ubiquinone oxidoreductase complex assembly factor 3, [RH, Score=73.2, Expect=4e-15]} {Dmel: FBgn0034919, CG5569, [RH, Score=105, Expect=5e-27]} {Celegans: WBGene00011123, nuaf-3, NADH:Ubiquinone oxidoreductase Assembly Factor, [RH, Score=105, Expect=1e-26]} {Smed: dd_Smed_v6_4891_0_1, dd_Smed_v6_4891_0_1, [RH, Score=110, Expect=2e-28]} {RNA1509_13305} {RNA1310_30623} {RNA815_13719}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA