TomoSeq data search

Data search

Results for MligTC455_23050

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_23050

978

20.38

Mlig455_009822

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.686

Mlig455_009822 {REF} {Length: 5908} {TRANSSPLICED} {RNA1509_6056} {RNA1310_433} {RNA815_9169}

Cumulative graph for MligTC455_23050

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.979	4.631	0.37292	1.00000
RegionR2	0.653	4.631	0.17640	0.52492
RegionR3	-0.189	4.631	0.64443	1.00000
RegionR4	-0.353	4.631	0.46091	0.78880
RegionR5	0.092	4.631	0.80300	1.00000
RegionR6	0.071	4.631	0.86010	1.00000
RegionR7	0.623	4.631	0.18206	0.78051
RegionR8	0.082	4.631	0.89183	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.843	4.631	0.38617	1.00000
RegenerationR2	0.319	4.631	0.45939	0.85203
RegenerationR3	0.509	4.631	0.28774	0.71971
RegenerationR4	0.152	4.631	0.75695	0.97171
RegenerationR5	0.083	4.631	0.84910	1.00000
RegenerationR6	0.726	4.631	0.11370	0.41526
RegenerationBL	1.189	4.631	0.00856	0.09156
RegenerationTP	-0.312	4.631	0.58359	0.95209

Genes with expression patterns similar to MligTC455_23050

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_23050	978	20.38	Mlig455_009822	Neo: - Age: Up-Up-Down, logFC(26M/2M)=0.686		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_009822 {REF} {Length: 5908} {TRANSSPLICED} {RNA1509_6056} {RNA1310_433} {RNA815_9169}
2.	MligTC455_39411	356	7.42	Mlig455_040242	Neo: - Age: -		3.405	0.719	-	-	0.869	0.856	0.961	Mlig455_040242 {REF} {Length: 4870} {Pfam: Adenylate and Guanylate cyclase catalytic domain [PF00211.22, score=34.9]} {Dmel: FBgn0003301, rut, rutabaga, [Score=140, Expect=4e-33]} {RNA1509_13561} {RNA1310_8616.1} {RNA815_35339}
3.	MligTC455_19637	2110	43.95	Mlig455_015648	Neo: - Age: -		1.895	-	-	-	0.957	0.938	-	Mlig455_015648 {REF} {Length: 4085} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=39.2]; HMG-box domain [PF09011.12, score=32.4]} {Smed: dd_Smed_v6_10010_0_1, dd_Smed_v6_10010_0_1, [Score=47.8, Expect=9e-06]} {RNA1509_3630} {RNA1310_12490} {RNA815_3935}
4.	MligTC455_32752	991	20.65	Mlig455_048936, Mlig455_048957	Neo: - Age: -	AGAP3	1.683	-	-	-	-	0.952	0.731	Mlig455_048936 {REF} {Length: 2649} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=114.5]; PH domain [PF00169.31, score=21.9]} {Human: ENSG00000133612, AGAP3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=250, Expect=3e-73]} {Mouse: ENSMUSG00000023353, Agap3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=242, Expect=3e-72]} {Dmel: FBgn0028509, CenG1A, Centaurin gamma 1A, [Score=181, Expect=7e-48]} {Celegans: WBGene00000566, cnt-2, Arf-GAP with ANK repeat and PH domain-containing protein cnt-2, [Score=146, Expect=3e-36]} {Smed: dd_Smed_v6_4301_0_2, dd_Smed_v6_4301_0_2, [Score=248, Expect=4e-70]} {RNA1509_54301} {RNA1310_18299} {RNA815_29402} Mlig455_048957 {REF} {Length: 11921} {Pfam: Putative GTPase activating protein for Arf [PF01412.20, score=114.5]; PH domain [PF00169.31, score=21.9]} {Human: ENSG00000133612, AGAP3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=249, Expect=3e-73]} {Mouse: ENSMUSG00000023353, Agap3, ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, [Score=243, Expect=3e-72]} {Dmel: FBgn0028509, CenG1A, Centaurin gamma 1A, [Score=181, Expect=8e-48]} {Celegans: WBGene00000566, cnt-2, Arf-GAP with ANK repeat and PH domain-containing protein cnt-2, [Score=145, Expect=2e-36]} {Smed: dd_Smed_v6_4301_0_2, dd_Smed_v6_4301_0_2, [Score=248, Expect=3e-70]} {RNA1509_54301} {RNA1310_18299} {RNA815_29402}
5.	MligTC455_05897	665	13.85	Mlig455_049059	Neo: - Age: -	LNX2	1.664	-	-	-	0.705	-	0.959	Mlig455_049059 {REF} {Length: 6005} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=182.6]; PDZ domain [PF17820.3, score=100.7]; PDZ domain [PF13180.8, score=57.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=27.9]; RING-type zinc-finger [PF13445.8, score=27.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=27.1]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=25.9]; TRAF-type zinc finger [PF02176.20, score=25.1]; zinc-RING finger domain [PF14634.8, score=22.9]; Ring finger domain [PF13639.8, score=22.5]; zinc finger of C3HC4-type, RING [PF15227.8, score=19.1]} {Human: ENSG00000139517, LNX2, ligand of numb-protein X 2, [Score=427, Expect=2e-138]} {Mouse: ENSMUSG00000016520, Lnx2, ligand of numb-protein X 2, [Score=416, Expect=3e-134]} {Dmel: FBgn0000008, a, arc, [RH, Score=70.9, Expect=4e-12]} {Celegans: WBGene00003404, mpz-1, Multiple PDZ domain protein, [Score=155, Expect=3e-40]} {Smed: dd_Smed_v6_8994_0_2, dd_Smed_v6_8994_0_2, [RH, Score=527, Expect=2e-175]} {RNA1509_14988} {RNA1310_9030} {RNA815_6198}
6.	MligTC455_45791	696	14.49	Mlig455_058617	Neo: - Age: -	GLIPR2	0.986	-	-	-	-	0.986	-	Mlig455_058617 {REF} {Length: 4186} {Pfam: Cysteine-rich secretory protein family [PF00188.28, score=105.0]} {Human: ENSG00000122694, GLIPR2, GLI pathogenesis related 2, [Score=105, Expect=1e-26]} {Mouse: ENSMUSG00000028480, Glipr2, GLI pathogenesis-related 2, [Score=107, Expect=2e-27]} {Dmel: FBgn0031407, CG4270, [Score=87.4, Expect=3e-20]} {Celegans: WBGene00008604, F09B9.5, [Score=77.0, Expect=2e-16]} {Smed: dd_Smed_v6_2081_0_1, dd_Smed_v6_2081_0_1, [Score=298, Expect=8e-99]} {RNA1509_32856, RNA1509_36527, RNA1509_38768, RNA1509_5626} {RNA1310_2406.1, RNA1509_32856, RNA1509_36527, RNA1509_38768, RNA1509_5626} {RNA1509_32856, RNA1509_36527, RNA1509_38768, RNA1509_5626, RNA815_3926.1}
7.	MligTC455_36881	2253	46.95	Mlig455_017274	Neo: - Age: Up-Down-Down	FLNA	0.983	-	-	-	0.983	-	-	Mlig455_017274 {REF} {Length: 10009} {Pfam: Filamin/ABP280 repeat [PF00630.21, score=990.1]; Calponin homology (CH) domain [PF00307.33, score=137.2]; Y_Y_Y domain [PF07495.15, score=55.8]; YtkA-like [PF13115.8, score=45.7]; Bacterial Ig-like domain (group 3) [PF16640.7, score=34.6]; CopC domain [PF04234.14, score=21.0]; CAMSAP CH domain [PF11971.10, score=18.3]} {Human: ENSG00000196924, FLNA, filamin A, [Score=1225, Expect=0.0]} {Mouse: ENSMUSG00000031328, Flna, filamin, alpha, [Score=1536, Expect=0.0]} {Dmel: FBgn0014141, cher, cheerio, [Score=1167, Expect=0.0]} {Celegans: WBGene00022048, fln-1, FiLamiN (Actin binding protein) homolog, [RH, Score=706, Expect=0.0]} {Smed: dd_Smed_v6_810_0_1, dd_Smed_v6_810_0_1, [RH, Score=1346, Expect=0.0]} {RNA1509_1689} {RNA1310_3926} {RNA815_150}
8.	MligTC455_28673	1921	40.02	Mlig455_022888	Neo: - Age: logFC(26M/2M)=0.198 Regeneration-upregulated R6: 1.053 Regeneration-enriched R6: 1.053	MAP1A	0.963	-	-	-	0.963	-	-	Mlig455_022888 {REF} {Length: 5962} {Pfam: Mucin-like [PF16058.7, score=21.2]} {Human: ENSG00000166963, MAP1A, microtubule associated protein 1A, [Score=71.2, Expect=9e-12]; ENSG00000131711, MAP1B, microtubule associated protein 1B, [Score=70.5, Expect=1e-11]} {Mouse: ENSMUSG00000052727, Map1b, microtubule-associated protein 1B, [Score=70.5, Expect=1e-11]; ENSMUSG00000027254, Map1a, microtubule-associated protein 1 A, [Score=68.6, Expect=4e-11]} {Dmel: FBgn0259108, futsch, [Score=105, Expect=1e-22]} {Smed: dd_Smed_v6_9830_0_1, dd_Smed_v6_9830_0_1, [RH, Score=66.2, Expect=4e-11]} {RNA1509_36626, RNA1509_38694, RNA1509_39233, RNA1509_55103} {RNA1310_4325.1, RNA1509_36626, RNA1509_38694, RNA1509_39233, RNA1509_55103} {RNA1509_36626, RNA1509_38694, RNA1509_39233, RNA1509_55103, RNA815_5236}
9.	MligTC455_29437	897	18.69	Mlig455_049319, Mlig455_049403	Neo: - Age: - Region-enriched R8: 2.720/0.00033 Region-enriched R7: 1.911/0.02272 Regeneration-depleted TP: -2.721	PKDREJ	0.962	-	-	-	-	0.962	-	Mlig455_049319 {REF} {Length: 10561} {Pfam: Polycystin cation channel [PF08016.14, score=289.6]; PLAT/LH2 domain [PF01477.25, score=81.7]; Ion transport protein [PF00520.33, score=61.2]} {Human: ENSG00000130943, PKDREJ, polycystin family receptor for egg jelly, [Score=294, Expect=1e-81]} {Mouse: ENSMUSG00000052496, Pkdrej, polycystin (PKD) family receptor for egg jelly, [Score=266, Expect=1e-72]} {Dmel: FBgn0041195, Pkd2, Polycystic kidney disease 2, [Score=137, Expect=9e-33]} {Celegans: WBGene00004035, pkd-2, Polycystin-2, [Score=156, Expect=3e-39]} {Smed: dd_Smed_v6_15525_0_2, dd_Smed_v6_15525_0_2, [Score=445, Expect=1e-132]} {RNA1509_2125} {RNA1310_81.1} {RNA815_193} Mlig455_049403 {REF} {Length: 11572} {Pfam: Polycystin cation channel [PF08016.14, score=288.0]; PLAT/LH2 domain [PF01477.25, score=80.0]; Ion transport protein [PF00520.33, score=59.0]; PKD domain [PF18911.2, score=38.5]; PKD domain [PF00801.22, score=23.6]} {Human: ENSG00000130943, PKDREJ, polycystin family receptor for egg jelly, [Score=286, Expect=2e-76]} {Mouse: ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [Score=271, Expect=7e-72]} {Dmel: FBgn0041195, Pkd2, Polycystic kidney disease 2, [Score=142, Expect=2e-33]} {Celegans: WBGene00004035, pkd-2, Polycystin-2, [Score=150, Expect=1e-36]} {Smed: dd_Smed_v6_15525_0_2, dd_Smed_v6_15525_0_2, [Score=486, Expect=6e-138]} {RNA1509_2125} {RNA1310_81.1} {RNA815_193}
10.	MligTC455_28884	277	5.78	Mlig455_044369	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.673		0.957	-	-	-	-	-	0.957	Mlig455_044369 {REF} {Length: 10749} {Mouse: ENSMUSG00000074358, Ccdc61, coiled-coil domain containing 61, [Score=51.2, Expect=1e-06]} {Smed: dd_Smed_v6_14065_0_1, dd_Smed_v6_14065_0_1, [Score=50.4, Expect=1e-06]} {RNA1509_18025, RNA1509_4648, RNA1509_54449} {RNA1310_2280.1, RNA1509_18025, RNA1509_54449} {RNA1509_18025, RNA1509_54449, RNA815_694.2}

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