M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39411

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39411 356 7.42 Mlig455_040242

Neo: -

Age: -

 Mlig455_040242 {REF} {Length: 4870} {Pfam: Adenylate and Guanylate cyclase catalytic domain [PF00211.22, score=34.9]} {Dmel: FBgn0003301, rut, rutabaga, [Score=140, Expect=4e-33]} {RNA1509_13561} {RNA1310_8616.1} {RNA815_35339}

Cumulative graph for MligTC455_39411

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.593 3.307 0.18368 0.81353
RegionR2 0.909 3.307 0.29547 0.68415
RegionR3 0.039 3.307 0.83513 1.00000
RegionR4 0.746 3.307 0.40662 0.73365
RegionR5 0.223 3.307 0.74829 1.00000
RegionR6 0.645 3.307 0.45255 1.00000
RegionR7 1.574 3.307 0.05025 0.43103
RegionR8 1.457 3.307 0.15229 0.70699

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.701 3.307 0.99994 1.00000
RegenerationR2 0.368 3.307 0.30684 0.74745
RegenerationR3 0.401 3.307 0.40756 0.80708
RegenerationR4 -0.096 3.307 0.84012 1.00000
RegenerationR5 0.446 3.307 0.28852 0.71670
RegenerationR6 0.551 3.307 0.22851 0.57408
RegenerationBL 0.377 3.307 0.47720 0.84294
RegenerationTP -0.88 3.307 0.17603 0.60984


Genes with expression patterns similar to MligTC455_39411

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39411 356 7.42 Mlig455_040242

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_040242 {REF} {Length: 4870} {Pfam: Adenylate and Guanylate cyclase catalytic domain [PF00211.22, score=34.9]} {Dmel: FBgn0003301, rut, rutabaga, [Score=140, Expect=4e-33]} {RNA1509_13561} {RNA1310_8616.1} {RNA815_35339}
2. MligTC455_23050 978 20.38 Mlig455_009822

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.686

 3.405 0.719 - - 0.869 0.856 0.961 Mlig455_009822 {REF} {Length: 5908} {TRANSSPLICED} {RNA1509_6056} {RNA1310_433} {RNA815_9169}
3. MligTC455_18570 1029 21.43 Mlig455_053836, Mlig455_068506

Neo: -

Age: -

 TDG 2.731 - - - 0.911 0.959 0.861

Mlig455_053836 {REF} {Length: 3374} {TRANSSPLICED} {Pfam: Uracil DNA glycosylase superfamily [PF03167.21, score=61.7]} {Human: ENSG00000139372, TDG, thymine DNA glycosylase, [Score=200, Expect=6e-57]} {Mouse: ENSMUSG00000034674, Tdg, thymine DNA glycosylase, [Score=205, Expect=7e-59]} {Dmel: FBgn0026869, Thd1, [Score=249, Expect=3e-70]} {Smed: dd_Smed_v6_4053_0_1, dd_Smed_v6_4053_0_1, [RH, Score=342, Expect=2e-109]} {RNA1509_17434, RNA1509_31261} {RNA1310_4364, RNA1509_17434, RNA1509_31261} {RNA1509_17434, RNA1509_31261, RNA815_5870.1}

Mlig455_068506 {REF} {Length: 3371} {TRANSSPLICED} {Pfam: Uracil DNA glycosylase superfamily [PF03167.21, score=61.6]} {Human: ENSG00000139372, TDG, thymine DNA glycosylase, [Score=200, Expect=4e-57]} {Mouse: ENSMUSG00000034674, Tdg, thymine DNA glycosylase, [Score=205, Expect=6e-59]} {Dmel: FBgn0026869, Thd1, [Score=250, Expect=3e-70]} {Smed: dd_Smed_v6_4053_0_1, dd_Smed_v6_4053_0_1, [RH, Score=343, Expect=1e-109]} {RNA1509_17434, RNA1509_44433} {RNA1310_4364, RNA1509_44433} {RNA1509_44433, RNA815_5870.1}
4. MligTC455_52212 1606 33.46 Mlig455_014430

Neo: -

Age: -

Regeneration-upregulated BL: 1.347

Regeneration-enriched BL: 1.347

 MARK2 2.526 - - - 0.950 0.822 0.754 Mlig455_014430 {REF} {Length: 5942} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=253.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=155.0]; Kinase associated domain 1 [PF02149.21, score=67.5]; Kinase-like [PF14531.8, score=29.6]; ABC1 atypical kinase-like domain [PF03109.18, score=27.7]; RIO1 family [PF01163.24, score=19.2]} {Human: ENSG00000072518, MARK2, microtubule affinity regulating kinase 2, [RH, Score=574, Expect=0.0]; ENSG00000075413, MARK3, microtubule affinity regulating kinase 3, [RH, Score=571, Expect=0.0]; ENSG00000007047, MARK4, microtubule affinity regulating kinase 4, [RH, Score=559, Expect=0.0]; ENSG00000116141, MARK1, microtubule affinity regulating kinase 1, [RH, Score=551, Expect=0.0]} {Mouse: ENSMUSG00000024969, Mark2, MAP/microtubule affinity regulating kinase 2, [RH, Score=573, Expect=0.0]; ENSMUSG00000007411, Mark3, MAP/microtubule affinity regulating kinase 3, [RH, Score=569, Expect=0.0]; ENSMUSG00000030397, Mark4, MAP/microtubule affinity regulating kinase 4, [RH, Score=554, Expect=0.0]; ENSMUSG00000026620, Mark1, MAP/microtubule affinity regulating kinase 1, [RH, Score=551, Expect=0.0]} {Dmel: FBgn0260934, par-1, [RH, Score=566, Expect=0.0]} {Celegans: WBGene00003916, par-1, Serine/threonine-protein kinase par-1, [RH, Score=555, Expect=7e-180]} {Smed: dd_Smed_v6_3685_0_1, dd_Smed_v6_3685_0_1, [RH, Score=585, Expect=0.0]} {RNA1509_2419} {RNA1310_1494} {RNA815_6824}
5. MligTC455_50148 595 12.39 Mlig455_006502, Mlig455_006621

Neo: -

Age: -

Region-enriched R4: 1.783/0.00382

 ZBBX 2.495 0.831 - 0.703 - 0.961 -

Mlig455_006502 {REF} {Length: 3171} {TRANSSPLICED} {Pfam: Cytoplasmic polyadenylation element-binding protein ZZ domain [PF16366.7, score=18.8]} {Human: ENSG00000169064, ZBBX, zinc finger B-box domain containing, [RH, Score=78.6, Expect=3e-14]} {Mouse: ENSMUSG00000034151, Zbbx, zinc finger, B-box domain containing, [RH, Score=89.4, Expect=6e-18]} {Smed: dd_Smed_v6_11048_0_1, dd_Smed_v6_11048_0_1, [RH, Score=139, Expect=3e-34]} {RNA1509_10989, RNA1509_54948} {RNA1310_3743, RNA1509_10989, RNA1509_54948} {RNA1509_10989, RNA1509_54948, RNA815_5872}

Mlig455_006621 {REF} {Length: 3128} {TRANSSPLICED} {Human: ENSG00000169064, ZBBX, zinc finger B-box domain containing, [RH, Score=80.1, Expect=9e-15]} {Mouse: ENSMUSG00000034151, Zbbx, zinc finger, B-box domain containing, [RH, Score=89.0, Expect=9e-18]} {Smed: dd_Smed_v6_11048_0_1, dd_Smed_v6_11048_0_1, [RH, Score=139, Expect=3e-34]} {RNA1509_10989} {RNA1310_3743} {RNA815_5872}
6. MligTC455_39183 136 2.84 Mlig455_045539

Neo: -

Age: -

 1.786 - - - 0.830 0.956 - Mlig455_045539 {REF} {Length: 5635} {Pfam: Poxvirus A32 protein [PF04665.14, score=27.0]} {Celegans: WBGene00021498, Y40C7B.1, [Score=51.6, Expect=2e-07]} {RNA1509_5514} {RNA1310_683.1} {RNA815_1542.1}
7. MligTC455_28132 118 2.45 Mlig455_034684

Neo: -

Age: -

 1.739 - - - 0.952 - 0.787 Mlig455_034684 {REF} {Length: 1530} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}
8. MligTC455_30908 575 11.98 Mlig455_034385

Neo: -

Age: -

 RBMS2 1.736 - - - 0.779 - 0.957 Mlig455_034385 {REF} {Length: 4835} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=55.7]} {Human: ENSG00000076067, RBMS2, RNA binding motif single stranded interacting protein 2, [RH, Score=120, Expect=2e-28]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [RH, Score=114, Expect=2e-26]} {Mouse: ENSMUSG00000040043, Rbms2, RNA binding motif, single stranded interacting protein 2, [RH, Score=120, Expect=5e-29]; ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [RH, Score=114, Expect=1e-26]} {Dmel: FBgn0052423, shep, alan shepard, [RH, Score=105, Expect=2e-23]} {Celegans: WBGene00006331, sup-26, SUPpressor, [Score=111, Expect=1e-26]} {Smed: dd_Smed_v6_2612_0_2, dd_Smed_v6_2612_0_2, [RH, Score=111, Expect=3e-25]} {RNA1509_833} {RNA1310_3706.1} {RNA815_5711}
9. MligTC455_32743 1959 40.8 Mlig455_067917

Neo: -

Age: Up-Down-Up

 KY 1.72 - - 0.762 0.958 - - Mlig455_067917 {REF} {Length: 6701} {TRANSSPLICED} {Pfam: Transglutaminase-like superfamily [PF01841.21, score=37.8]} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=143, Expect=3e-34]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=147, Expect=9e-36]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=281, Expect=4e-79]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=250, Expect=4e-72]} {Smed: dd_Smed_v6_1846_0_1, dd_Smed_v6_1846_0_1, [RH, Score=570, Expect=0.0]} {RNA1509_1987} {RNA1310_669} {RNA815_5918.1}
10. MligTC455_34125 556 11.58 Mlig455_049354

Neo: -

Age: -

 MPDZ 1.7 0.743 - - - 0.957 - Mlig455_049354 {REF} {Length: 8195} {Pfam: PDZ domain [PF00595.26, score=481.5]; PDZ domain [PF17820.3, score=245.9]; PDZ domain [PF13180.8, score=160.6]; Family of unknown function (DUF6288) [PF19805.1, score=27.8]} {Human: ENSG00000107186, MPDZ, multiple PDZ domain crumbs cell polarity complex component, [RH, Score=312, Expect=6e-85]} {Mouse: ENSMUSG00000028402, Mpdz, multiple PDZ domain protein, [RH, Score=308, Expect=8e-84]} {Dmel: FBgn0067864, Patj, [Score=244, Expect=1e-66]} {Celegans: WBGene00003404, mpz-1, Multiple PDZ domain protein, [Score=210, Expect=6e-54]} {Smed: dd_Smed_v6_5376_0_2, dd_Smed_v6_5376_0_2, [RH, Score=379, Expect=7e-106]} {RNA1509_52171} {RNA1310_2164} {RNA815_9270}
11. MligTC455_48494 599 12.48 Mlig455_014371

Neo: -

Age: Up-Down-Down

 UNC79 1.694 0.964 - - - 0.730 - Mlig455_014371 {REF} {Length: 8900} {Pfam: Cation-channel complex subunit UNC-79 [PF14776.8, score=493.9]} {Human: ENSG00000276416, UNC79, unc-79 homolog, NALCN channel complex subunit, [RH, Score=454, Expect=5e-128]; ENSG00000133958, UNC79, unc-79 homolog, NALCN channel complex subunit, [RH, Score=454, Expect=5e-128]} {Mouse: ENSMUSG00000021198, Unc79, unc-79 homolog, [RH, Score=456, Expect=1e-128]} {Dmel: FBgn0038693, unc79, uncoordinated 79, [RH, Score=475, Expect=1e-134]} {Celegans: WBGene00006811, unc-79, Uncoordinated protein 79, [RH, Score=350, Expect=1e-96]} {Smed: dd_Smed_v6_6600_0_15, dd_Smed_v6_6600_0_15, [RH, Score=584, Expect=6e-170]} {RNA1509_10593} {RNA1310_930.1} {RNA815_1785.1}
12. MligTC455_35726 1689 35.18 Mlig455_025824

Neo: -

Age: -

 FRMD5 0.966 - - - - 0.966 - Mlig455_025824 {REF} {Length: 4351} {TRANSSPLICED} {Pfam: FERM central domain [PF00373.20, score=53.9]; FERM C-terminal PH-like domain [PF09380.12, score=45.6]; FERM N-terminal domain [PF09379.12, score=40.1]} {Human: ENSG00000171877, FRMD5, FERM domain containing 5, [Score=208, Expect=3e-59]; ENSG00000172159, FRMD3, FERM domain containing 3, [Score=199, Expect=1e-55]} {Mouse: ENSMUSG00000027238, Frmd5, FERM domain containing 5, [Score=209, Expect=2e-59]; ENSMUSG00000049122, Frmd3, FERM domain containing 3, [Score=206, Expect=4e-58]} {Dmel: FBgn0032225, CG5022, [RH, Score=197, Expect=5e-55]} {Celegans: WBGene00001491, frm-4, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=157, Expect=1e-40]} {Smed: dd_Smed_v6_6227_0_1, dd_Smed_v6_6227_0_1, [RH, Score=294, Expect=1e-90]} {RNA1509_11468} {RNA1310_11514.1} {RNA815_12229}
13. MligTC455_16046 633 13.18 Mlig455_022748

Neo: -

Age: Down-Up-Down

 CDYL 0.963 - - - - 0.963 - Mlig455_022748 {REF} {Length: 8355} {TRANSSPLICED} {Pfam: Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=46.1]; Ankyrin repeats (3 copies) [PF12796.9, score=27.1]; Ankyrin repeat [PF13606.8, score=21.5]} {Human: ENSG00000153046, CDYL, chromodomain Y like, [Score=56.2, Expect=7e-08]; ENSG00000196199, MPHOSPH8, M-phase phosphoprotein 8, [Score=53.9, Expect=5e-07]} {Mouse: ENSMUSG00000031758, Cdyl2, chromodomain protein, Y chromosome-like 2, [Score=53.5, Expect=3e-07]; ENSMUSG00000059288, Cdyl, chromodomain protein, Y chromosome-like, [Score=52.4, Expect=7e-07]; ENSMUSG00000079184, Mphosph8, M-phase phosphoprotein 8, [Score=52.4, Expect=9e-07]} {Dmel: FBgn0004400, rhi, rhino, [Score=52.0, Expect=6e-07]} {Smed: dd_Smed_v6_8960_0_1, dd_Smed_v6_8960_0_1, [Score=60.5, Expect=1e-09]} {RNA1509_12680, RNA1509_39952} {RNA1310_20959.1, RNA1509_39952} {RNA1509_39952, RNA815_8097}
14. MligTC455_18020 367 7.65 Mlig455_069164

Neo: -

Age: -

 TMEM68 0.959 - - - - 0.959 - Mlig455_069164 {REF} {Length: 1616} {TRANSSPLICED} {Human: ENSG00000167904, TMEM68, transmembrane protein 68, [Score=122, Expect=3e-32]} {Mouse: ENSMUSG00000028232, Tmem68, transmembrane protein 68, [Score=116, Expect=2e-30]} {Dmel: FBgn0085377, CG34348, [Score=124, Expect=2e-33]} {Celegans: WBGene00021394, Y38C1AA.1, [Score=105, Expect=3e-26]} {Smed: dd_Smed_v6_13739_0_1, dd_Smed_v6_13739_0_1, [Score=98.2, Expect=4e-25]} {RNA1509_15918} {RNA1310_13548} {RNA815_46805}
15. MligTC455_35624 515 10.72 Mlig455_004638

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_004638 {REF} {Length: 1137} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_15717, RNA1509_47959} {RNA1310_38256, RNA1509_47959} {RNA1509_47959, RNA815_20822}
16. MligTC455_28198 639 13.31 Mlig455_030935, Mlig455_032617

Neo: -

Age: Down-Up-Down

 0.953 - - - - 0.953 -

Mlig455_030935 {REF} {Length: 6761} {Pfam: African swine fever virus J13L protein [PF05568.13, score=44.9]} {RNA1509_19556} {RNA1310_9365} {RNA815_12631}

Mlig455_032617 {REF} {Length: 6082} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=31.2]} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=96.3, Expect=1e-19]} {RNA1509_12078, RNA1509_19556} {RNA1310_9365, RNA1509_12078} {RNA1509_12078, RNA815_12631}
17. MligTC455_25477 356 7.41 Mlig455_040501, Mlig455_040505

Neo: -

Age: Up-Down-Up

Region-enriched R7: 2.227/0.03943

 RAPH1 0.951 - - - - - 0.951

Mlig455_040501 {REF} {Length: 3001} {Pfam: PH domain [PF00169.31, score=37.6]} {Human: ENSG00000173166, RAPH1, Ras association (RalGDS/AF-6) and pleckstrin homology domains 1, [RH, Score=154, Expect=5e-39]} {Mouse: ENSMUSG00000026014, Raph1, Ras association (RalGDS/AF-6) and pleckstrin homology domains 1, [RH, Score=152, Expect=1e-38]} {Dmel: FBgn0261811, pico, [RH, Score=133, Expect=2e-32]} {Celegans: WBGene00003243, mig-10, Abnormal cell migration protein 10, [RH, Score=133, Expect=1e-32]} {Smed: dd_Smed_v6_3216_0_1, dd_Smed_v6_3216_0_1, [RH, Score=150, Expect=3e-39]} {RNA1509_24403} {RNA1310_12419, RNA1509_24403} {RNA1509_24403, RNA815_13072}

Mlig455_040505 {REF} {Length: 2986} {Pfam: PH domain [PF00169.31, score=37.7]} {Human: ENSG00000173166, RAPH1, Ras association (RalGDS/AF-6) and pleckstrin homology domains 1, [RH, Score=156, Expect=1e-39]} {Mouse: ENSMUSG00000026014, Raph1, Ras association (RalGDS/AF-6) and pleckstrin homology domains 1, [RH, Score=154, Expect=3e-39]} {Dmel: FBgn0261811, pico, [RH, Score=132, Expect=6e-32]} {Celegans: WBGene00003243, mig-10, Abnormal cell migration protein 10, [RH, Score=133, Expect=1e-32]} {Smed: dd_Smed_v6_3216_0_1, dd_Smed_v6_3216_0_1, [RH, Score=150, Expect=3e-39]} {RNA1509_24403} {RNA1310_12419} {RNA815_13072}
18. MligTC455_43990 349 7.27 Mlig455_062215

Neo: Irradiation

Age: Up-Down-Down

 0.951 - - - 0.951 - - Mlig455_062215 {REF} {Length: 733} {NoTransDecoderORF} {RNA1509_42323, RNA1509_47967} {RNA1310_60174, RNA1509_42323, RNA1509_47967} {RNA1509_42323, RNA1509_47967, RNA815_30810}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA