M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36881

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36881 2253 46.95 Mlig455_017274

Neo: -

Age: Up-Down-Down

 FLNA Mlig455_017274 {REF} {Length: 10009} {Pfam: Filamin/ABP280 repeat [PF00630.21, score=990.1]; Calponin homology (CH) domain [PF00307.33, score=137.2]; Y_Y_Y domain [PF07495.15, score=55.8]; YtkA-like [PF13115.8, score=45.7]; Bacterial Ig-like domain (group 3) [PF16640.7, score=34.6]; CopC domain [PF04234.14, score=21.0]; CAMSAP CH domain [PF11971.10, score=18.3]} {Human: ENSG00000196924, FLNA, filamin A, [Score=1225, Expect=0.0]} {Mouse: ENSMUSG00000031328, Flna, filamin, alpha, [Score=1536, Expect=0.0]} {Dmel: FBgn0014141, cher, cheerio, [Score=1167, Expect=0.0]} {Celegans: WBGene00022048, fln-1, FiLamiN (Actin binding protein) homolog, [RH, Score=706, Expect=0.0]} {Smed: dd_Smed_v6_810_0_1, dd_Smed_v6_810_0_1, [RH, Score=1346, Expect=0.0]} {RNA1509_1689} {RNA1310_3926} {RNA815_150}

Cumulative graph for MligTC455_36881

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.104 5.742 0.87797 1.00000
RegionR2 -0.223 5.742 0.53762 0.90682
RegionR3 -0.569 5.742 0.06615 0.45378
RegionR4 0.487 5.742 0.17193 0.43639
RegionR5 -0.321 5.742 0.27358 0.59954
RegionR6 0.557 5.742 0.05622 0.44525
RegionR7 0.297 5.742 0.36526 1.00000
RegionR8 -0.125 5.742 0.75790 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.926 5.742 0.02819 0.61685
RegenerationR2 -0.074 5.742 0.83258 0.99875
RegenerationR3 -0.033 5.742 0.93079 1.00000
RegenerationR4 -0.69 5.742 0.07374 0.43141
RegenerationR5 -0.089 5.742 0.80554 0.98992
RegenerationR6 -0.221 5.742 0.53630 0.83051
RegenerationBL 0.059 5.742 0.86999 1.00000
RegenerationTP -0.388 5.742 0.33949 0.78284


Genes with expression patterns similar to MligTC455_36881

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36881 2253 46.95 Mlig455_017274

Neo: -

Age: Up-Down-Down

 FLNA 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_017274 {REF} {Length: 10009} {Pfam: Filamin/ABP280 repeat [PF00630.21, score=990.1]; Calponin homology (CH) domain [PF00307.33, score=137.2]; Y_Y_Y domain [PF07495.15, score=55.8]; YtkA-like [PF13115.8, score=45.7]; Bacterial Ig-like domain (group 3) [PF16640.7, score=34.6]; CopC domain [PF04234.14, score=21.0]; CAMSAP CH domain [PF11971.10, score=18.3]} {Human: ENSG00000196924, FLNA, filamin A, [Score=1225, Expect=0.0]} {Mouse: ENSMUSG00000031328, Flna, filamin, alpha, [Score=1536, Expect=0.0]} {Dmel: FBgn0014141, cher, cheerio, [Score=1167, Expect=0.0]} {Celegans: WBGene00022048, fln-1, FiLamiN (Actin binding protein) homolog, [RH, Score=706, Expect=0.0]} {Smed: dd_Smed_v6_810_0_1, dd_Smed_v6_810_0_1, [RH, Score=1346, Expect=0.0]} {RNA1509_1689} {RNA1310_3926} {RNA815_150}
2. MligTC455_23050 978 20.38 Mlig455_009822

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.686

 0.983 - - - 0.983 - - Mlig455_009822 {REF} {Length: 5908} {TRANSSPLICED} {RNA1509_6056} {RNA1310_433} {RNA815_9169}
3. MligTC455_27693 404 8.42 Mlig455_054064

Neo: -

Age: -

 0.96 - - - 0.960 - - Mlig455_054064 {REF} {Length: 1804} {NoTransDecoderORF} {RNA1509_10424} {RNA1310_37328} {RNA815_3801}
4. MligTC455_27694 1453 30.28 Mlig455_010036, Mlig455_054063, Mlig455_063282

Neo: -

Age: -

 DCC 0.955 - - - 0.955 - -

Mlig455_010036 {REF} {Length: 4981} {Pfam: Fibronectin type III domain [PF00041.23, score=147.7]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=52.7]; Immunoglobulin domain [PF13895.8, score=24.6]; T-cell surface glycoprotein CD3 delta chain [PF16680.7, score=23.2]; Interferon-alpha/beta receptor, fibronectin type III [PF09294.12, score=22.7]; Immunoglobulin domain [PF13927.8, score=21.3]} {Human: ENSG00000187323, DCC, DCC netrin 1 receptor, [Score=97.4, Expect=9e-20]} {Mouse: ENSMUSG00000060534, Dcc, deleted in colorectal carcinoma, [Score=98.2, Expect=4e-20]} {Dmel: FBgn0265296, Dscam2, Down syndrome cell adhesion molecule 2, [Score=67.4, Expect=8e-11]} {Celegans: WBGene00009717, dep-1, Receptor-type tyrosine-protein phosphatase dep-1, [Score=55.8, Expect=2e-07]} {Smed: dd_Smed_v6_10176_0_1, dd_Smed_v6_10176_0_1, [Score=80.1, Expect=6e-15]} {RNA1509_17100} {RNA1310_1215.1} {RNA815_6811.1}

Mlig455_054063 {REF} {Length: 4978} {Pfam: Fibronectin type III domain [PF00041.23, score=143.5]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=48.6]; Immunoglobulin domain [PF13895.8, score=24.5]; T-cell surface glycoprotein CD3 delta chain [PF16680.7, score=23.2]; Tissue factor [PF01108.19, score=22.2]; Immunoglobulin domain [PF13927.8, score=21.3]; Interferon-alpha/beta receptor, fibronectin type III [PF09294.12, score=20.1]} {Human: ENSG00000187323, DCC, DCC netrin 1 receptor, [Score=97.1, Expect=1e-19]} {Mouse: ENSMUSG00000060534, Dcc, deleted in colorectal carcinoma, [Score=98.2, Expect=4e-20]} {Dmel: FBgn0265296, Dscam2, Down syndrome cell adhesion molecule 2, [Score=61.2, Expect=7e-09]} {Celegans: WBGene00009717, dep-1, Receptor-type tyrosine-protein phosphatase dep-1, [Score=56.2, Expect=2e-07]} {Smed: dd_Smed_v6_10176_0_1, dd_Smed_v6_10176_0_1, [Score=83.6, Expect=6e-16]} {RNA1509_10424, RNA1509_17100} {RNA1310_1215.1, RNA1509_10424, RNA1509_17100} {RNA1509_10424, RNA1509_17100, RNA815_6811.1}

Mlig455_063282 {REF} {Length: 5009} {Pfam: Fibronectin type III domain [PF00041.23, score=148.6]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=53.7]; Interferon-alpha/beta receptor, fibronectin type III [PF09294.12, score=23.4]; Tissue factor [PF01108.19, score=22.8]} {Human: ENSG00000187323, DCC, DCC netrin 1 receptor, [Score=98.2, Expect=3e-20]} {Mouse: ENSMUSG00000060534, Dcc, deleted in colorectal carcinoma, [Score=99.4, Expect=2e-20]} {Dmel: FBgn0265296, Dscam2, Down syndrome cell adhesion molecule 2, [Score=63.2, Expect=1e-09]} {Celegans: WBGene00009717, dep-1, Receptor-type tyrosine-protein phosphatase dep-1, [Score=55.5, Expect=2e-07]} {Smed: dd_Smed_v6_10176_0_1, dd_Smed_v6_10176_0_1, [Score=80.5, Expect=4e-15]} {RNA1509_41673} {RNA1310_1215.1, RNA1509_41673} {RNA1509_41673, RNA815_3801}
5. MligTC455_19637 2110 43.95 Mlig455_015648

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_015648 {REF} {Length: 4085} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=39.2]; HMG-box domain [PF09011.12, score=32.4]} {Smed: dd_Smed_v6_10010_0_1, dd_Smed_v6_10010_0_1, [Score=47.8, Expect=9e-06]} {RNA1509_3630} {RNA1310_12490} {RNA815_3935}
6. MligTC455_35967 634 13.22 Mlig455_038049

Neo: -

Age: -

Region-enriched R5: 1.197/0.00174

 ABL1 0.952 - - - - 0.952 - Mlig455_038049 {REF} {Length: 6083} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=312.6]; Protein kinase domain [PF00069.27, score=154.8]; SH2 domain [PF00017.26, score=70.5]; Variant SH3 domain [PF14604.8, score=35.2]; SH3 domain [PF00018.30, score=32.7]; Phosphotransferase enzyme family [PF01636.25, score=21.0]} {Human: ENSG00000097007, ABL1, ABL proto-oncogene 1, non-receptor tyrosine kinase, [RH, Score=535, Expect=1e-170]; ENSG00000143322, ABL2, ABL proto-oncogene 2, non-receptor tyrosine kinase, [RH, Score=522, Expect=1e-166]} {Mouse: ENSMUSG00000026842, Abl1, c-abl oncogene 1, non-receptor tyrosine kinase, [RH, Score=533, Expect=1e-170]; ENSMUSG00000026596, Abl2, v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene), [RH, Score=521, Expect=2e-166]} {Dmel: FBgn0000017, Abl, Abl tyrosine kinase, [RH, Score=535, Expect=7e-167]} {Celegans: WBGene00000018, abl-1, Tyrosine-protein kinase abl-1, [RH, Score=503, Expect=2e-158]} {Smed: dd_Smed_v6_4352_0_1, dd_Smed_v6_4352_0_1, [RH, Score=536, Expect=8e-175]} {RNA1509_14302, RNA1509_45756} {RNA1310_8904, RNA1509_45756} {RNA1509_45756, RNA815_5007}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA