TomoSeq data search

Data search

Results for MligTC455_23070

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_23070

1606

33.46

Mlig455_034639, Mlig455_062635

Neo: -

Age: -

Region-enriched R7: 1.351/0.00031

EFHD1

Mlig455_034639 {REF} {Length: 3054} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=29.9]; EF hand [PF00036.34, score=28.2]; EF-hand domain [PF13405.8, score=27.8]; EF hand [PF13202.8, score=18.5]} {Human: ENSG00000115468, EFHD1, EF-hand domain family member D1, [Score=114, Expect=2e-30]; ENSG00000142634, EFHD2, EF-hand domain family member D2, [Score=111, Expect=2e-29]} {Mouse: ENSMUSG00000040659, Efhd2, EF hand domain containing 2, [Score=112, Expect=5e-30]; ENSMUSG00000026255, Efhd1, EF hand domain containing 1, [Score=112, Expect=6e-30]} {Dmel: FBgn0032731, Swip-1, Swiprosin-1, [Score=110, Expect=3e-29]} {Celegans: WBGene00012980, efhd-1, EF HanD calcium binding protein, [Score=87.4, Expect=6e-21]} {Smed: dd_Smed_v6_1467_0_1, dd_Smed_v6_1467_0_1, [Score=132, Expect=4e-38]} {RNA1509_32250} {RNA1310_17151} {RNA815_2891}

Mlig455_062635 {REF} {Length: 3055} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=29.9]; EF hand [PF00036.34, score=28.2]; EF-hand domain [PF13405.8, score=27.8]; EF hand [PF13202.8, score=18.5]} {Human: ENSG00000115468, EFHD1, EF-hand domain family member D1, [Score=114, Expect=2e-30]; ENSG00000142634, EFHD2, EF-hand domain family member D2, [Score=111, Expect=2e-29]} {Mouse: ENSMUSG00000040659, Efhd2, EF hand domain containing 2, [Score=112, Expect=5e-30]; ENSMUSG00000026255, Efhd1, EF hand domain containing 1, [Score=112, Expect=6e-30]} {Dmel: FBgn0032731, Swip-1, Swiprosin-1, [Score=110, Expect=3e-29]} {Celegans: WBGene00012980, efhd-1, EF HanD calcium binding protein, [Score=87.4, Expect=6e-21]} {Smed: dd_Smed_v6_1467_0_1, dd_Smed_v6_1467_0_1, [Score=132, Expect=4e-38]} {RNA1509_17138, RNA1509_23230, RNA1509_32250, RNA1509_40469, RNA1509_51568, RNA1509_52570, RNA1509_59315} {RNA1310_17151, RNA1509_17138, RNA1509_23230, RNA1509_32250, RNA1509_40469, RNA1509_51568, RNA1509_52570, RNA1509_59315} {RNA1509_17138, RNA1509_23230, RNA1509_32250, RNA1509_40469, RNA1509_51568, RNA1509_52570, RNA1509_59315, RNA815_2891}

Cumulative graph for MligTC455_23070

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.019	5.27	0.02644	0.42714
RegionR2	0.696	5.27	0.03610	0.21916
RegionR3	-0.014	5.27	0.96330	1.00000
RegionR4	-0.169	5.27	0.60947	0.92093
RegionR5	0.079	5.27	0.76235	1.00000
RegionR6	0.232	5.27	0.41476	0.98335
RegionR7	1.351	5.27	0.00000	0.00031
RegionR8	-0.156	5.27	0.71724	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.249	5.27	0.17152	0.91563
RegenerationR2	-0.285	5.27	0.29904	0.74078
RegenerationR3	0.415	5.27	0.18467	0.62089
RegenerationR4	0.588	5.27	0.06047	0.39401
RegenerationR5	0.31	5.27	0.27861	0.70778
RegenerationR6	0.511	5.27	0.09548	0.38433
RegenerationBL	0.603	5.27	0.05888	0.28162
RegenerationTP	0.41	5.27	0.24125	0.68732

Genes with expression patterns similar to MligTC455_23070

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_23070	1606	33.46	Mlig455_034639, Mlig455_062635	Neo: - Age: - Region-enriched R7: 1.351/0.00031	EFHD1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_034639 {REF} {Length: 3054} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=29.9]; EF hand [PF00036.34, score=28.2]; EF-hand domain [PF13405.8, score=27.8]; EF hand [PF13202.8, score=18.5]} {Human: ENSG00000115468, EFHD1, EF-hand domain family member D1, [Score=114, Expect=2e-30]; ENSG00000142634, EFHD2, EF-hand domain family member D2, [Score=111, Expect=2e-29]} {Mouse: ENSMUSG00000040659, Efhd2, EF hand domain containing 2, [Score=112, Expect=5e-30]; ENSMUSG00000026255, Efhd1, EF hand domain containing 1, [Score=112, Expect=6e-30]} {Dmel: FBgn0032731, Swip-1, Swiprosin-1, [Score=110, Expect=3e-29]} {Celegans: WBGene00012980, efhd-1, EF HanD calcium binding protein, [Score=87.4, Expect=6e-21]} {Smed: dd_Smed_v6_1467_0_1, dd_Smed_v6_1467_0_1, [Score=132, Expect=4e-38]} {RNA1509_32250} {RNA1310_17151} {RNA815_2891} Mlig455_062635 {REF} {Length: 3055} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=29.9]; EF hand [PF00036.34, score=28.2]; EF-hand domain [PF13405.8, score=27.8]; EF hand [PF13202.8, score=18.5]} {Human: ENSG00000115468, EFHD1, EF-hand domain family member D1, [Score=114, Expect=2e-30]; ENSG00000142634, EFHD2, EF-hand domain family member D2, [Score=111, Expect=2e-29]} {Mouse: ENSMUSG00000040659, Efhd2, EF hand domain containing 2, [Score=112, Expect=5e-30]; ENSMUSG00000026255, Efhd1, EF hand domain containing 1, [Score=112, Expect=6e-30]} {Dmel: FBgn0032731, Swip-1, Swiprosin-1, [Score=110, Expect=3e-29]} {Celegans: WBGene00012980, efhd-1, EF HanD calcium binding protein, [Score=87.4, Expect=6e-21]} {Smed: dd_Smed_v6_1467_0_1, dd_Smed_v6_1467_0_1, [Score=132, Expect=4e-38]} {RNA1509_17138, RNA1509_23230, RNA1509_32250, RNA1509_40469, RNA1509_51568, RNA1509_52570, RNA1509_59315} {RNA1310_17151, RNA1509_17138, RNA1509_23230, RNA1509_32250, RNA1509_40469, RNA1509_51568, RNA1509_52570, RNA1509_59315} {RNA1509_17138, RNA1509_23230, RNA1509_32250, RNA1509_40469, RNA1509_51568, RNA1509_52570, RNA1509_59315, RNA815_2891}
2.	MligTC455_35645	3253	67.78	Mlig455_067468	Neo: - Age: Down-Up-Down, logFC(26M/2M)=0.385 Region-enriched R7: 1.801/0.00002	CALR	1.851	-	-	-	0.956	-	0.895	Mlig455_067468 {REF} {Length: 3017} {Pfam: Calreticulin family [PF00262.20, score=288.0]} {Human: ENSG00000179218, CALR, calreticulin, [RH, Score=498, Expect=6e-176]} {Mouse: ENSMUSG00000003814, Calr, calreticulin, [RH, Score=498, Expect=6e-176]} {Dmel: FBgn0005585, Calr, Calreticulin, [RH, Score=498, Expect=3e-176]} {Celegans: WBGene00000802, crt-1, Calreticulin, [RH, Score=468, Expect=7e-165]} {Smed: dd_Smed_v6_220_0_4, dd_Smed_v6_220_0_4, [RH, Score=558, Expect=0.0]} {RNA1509_5040} {RNA1310_10824.1, RNA1509_5040} {RNA1509_5040, RNA815_3782.1}
3.	MligTC455_39262	106	2.2	Mlig455_047835	Neo: - Age: Up-Down-Down	NALCN	1.814	-	-	0.951	-	-	0.863	Mlig455_047835 {REF} {Length: 7474} {TRANSSPLICED} {Pfam: Ion transport protein [PF00520.33, score=295.4]} {Human: ENSG00000102452, NALCN, sodium leak channel, non-selective, [Score=1250, Expect=0.0]} {Mouse: ENSMUSG00000000197, Nalcn, sodium leak channel, non-selective, [Score=1255, Expect=0.0]} {Dmel: FBgn0002917, na, narrow abdomen, [Score=1264, Expect=0.0]} {Celegans: WBGene00006809, unc-77, Four domain-type voltage-gated ion channel alpha-1 subunit, [Score=1012, Expect=0.0]} {Smed: dd_Smed_v6_7314_0_1, dd_Smed_v6_7314_0_1, [Score=1380, Expect=0.0]} {RNA1509_44333} {RNA1310_7866.2} {RNA815_2697}
4.	MligTC455_48807	1486	30.96	Mlig455_010538, Mlig455_061797	Neo: Int S/G2/M Age: - Region-enriched R4: 1.212/0.01232	CNOT10	1.739	-	-	-	-	0.962	0.777	Mlig455_010538 {REF} {Length: 4184} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF07719.19, score=35.1]; Tetratricopeptide repeat [PF00515.30, score=26.6]; Tetratricopeptide repeat [PF13181.8, score=26.0]; Tetratricopeptide repeat [PF14559.8, score=23.4]; Tetratricopeptide repeat [PF13424.8, score=22.4]; Tetratricopeptide repeat [PF13374.8, score=21.1]} {Human: ENSG00000182973, CNOT10, CCR4-NOT transcription complex subunit 10, [RH, Score=275, Expect=1e-83]} {Mouse: ENSMUSG00000056167, Cnot10, CCR4-NOT transcription complex, subunit 10, [Score=294, Expect=2e-89]} {Dmel: FBgn0260444, Not10, CCR4-NOT transcription complex subunit 10, [RH, Score=99.0, Expect=2e-21]} {Smed: dd_Smed_v6_7843_0_1, dd_Smed_v6_7843_0_1, [RH, Score=286, Expect=7e-88]} {RNA1509_8416} {RNA1310_7100.1} {RNA815_2833} Mlig455_061797 {REF} {Length: 4630} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF07719.19, score=33.8]; Tetratricopeptide repeat [PF13428.8, score=27.6]; Tetratricopeptide repeat [PF13181.8, score=26.8]; Tetratricopeptide repeat [PF00515.30, score=26.5]; Tetratricopeptide repeat [PF14559.8, score=21.2]; Tetratricopeptide repeat [PF13374.8, score=19.4]} {Human: ENSG00000182973, CNOT10, CCR4-NOT transcription complex subunit 10, [RH, Score=323, Expect=5e-99]} {Mouse: ENSMUSG00000056167, Cnot10, CCR4-NOT transcription complex, subunit 10, [RH, Score=331, Expect=4e-102]} {Dmel: FBgn0260444, Not10, CCR4-NOT transcription complex subunit 10, [RH, Score=99.4, Expect=3e-21]} {Smed: dd_Smed_v6_7843_0_1, dd_Smed_v6_7843_0_1, [RH, Score=286, Expect=1e-86]} {RNA1509_8416} {RNA1310_7100.1, RNA1509_8416} {RNA1509_8416, RNA815_2833}
5.	MligTC455_41860	7703	160.49	Mlig455_015322, Mlig455_015364, Mlig455_068750	Neo: Neoblast Age: Down-Up-Up Regeneration-upregulated BL: 1.222 Regeneration-enriched BL: 1.222	EIF4A3	1.731	-	-	-	0.951	-	0.780	Mlig455_015322 {REF} {Length: 2393} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=149.7]; Helicase conserved C-terminal domain [PF00271.33, score=108.1]; AAA domain [PF13604.8, score=32.1]; AAA domain [PF13245.8, score=26.6]; Type III restriction enzyme, res subunit [PF04851.17, score=23.4]} {Human: ENSG00000141543, EIF4A3, eukaryotic translation initiation factor 4A3, [RH, Score=691, Expect=0.0]} {Mouse: ENSMUSG00000025580, Eif4a3, eukaryotic translation initiation factor 4A3, [RH, Score=691, Expect=0.0]; ENSMUSG00000107906, Gm5580, predicted pseudogene 5580, [RH, Score=679, Expect=0.0]; ENSMUSG00000094973, Gm8994, predicted gene 8994, [RH, Score=677, Expect=0.0]} {Dmel: FBgn0037573, CG7483, [RH, Score=687, Expect=0.0]} {Celegans: WBGene00022029, Y65B4A.6, [RH, Score=676, Expect=0.0]} {Smed: dd_Smed_v6_737_0_1, dd_Smed_v6_737_0_1, [RH, Score=643, Expect=0.0]} {RNA1509_4083} {RNA1310_16202} {RNA815_5196} Mlig455_015364 {REF} {Length: 2394} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=149.7]; Helicase conserved C-terminal domain [PF00271.33, score=108.1]; AAA domain [PF13604.8, score=32.1]; AAA domain [PF13245.8, score=26.6]; Type III restriction enzyme, res subunit [PF04851.17, score=23.4]} {Human: ENSG00000141543, EIF4A3, eukaryotic translation initiation factor 4A3, [RH, Score=691, Expect=0.0]} {Mouse: ENSMUSG00000025580, Eif4a3, eukaryotic translation initiation factor 4A3, [RH, Score=691, Expect=0.0]; ENSMUSG00000107906, Gm5580, predicted pseudogene 5580, [RH, Score=679, Expect=0.0]; ENSMUSG00000094973, Gm8994, predicted gene 8994, [RH, Score=678, Expect=0.0]} {Dmel: FBgn0037573, CG7483, [RH, Score=687, Expect=0.0]} {Celegans: WBGene00022029, Y65B4A.6, [RH, Score=676, Expect=0.0]} {Smed: dd_Smed_v6_737_0_1, dd_Smed_v6_737_0_1, [RH, Score=643, Expect=0.0]} {RNA1509_4083} {RNA1310_16202} {RNA815_5196} Mlig455_068750 {REF} {Length: 1722} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=149.8]; Helicase conserved C-terminal domain [PF00271.33, score=108.2]; AAA domain [PF13604.8, score=32.2]; AAA domain [PF13245.8, score=26.7]; Type III restriction enzyme, res subunit [PF04851.17, score=23.5]} {Human: ENSG00000141543, EIF4A3, eukaryotic translation initiation factor 4A3, [RH, Score=691, Expect=0.0]} {Mouse: ENSMUSG00000025580, Eif4a3, eukaryotic translation initiation factor 4A3, [RH, Score=690, Expect=0.0]; ENSMUSG00000107906, Gm5580, predicted pseudogene 5580, [RH, Score=679, Expect=0.0]; ENSMUSG00000094973, Gm8994, predicted gene 8994, [RH, Score=678, Expect=0.0]} {Dmel: FBgn0037573, CG7483, [RH, Score=687, Expect=0.0]} {Celegans: WBGene00022029, Y65B4A.6, [RH, Score=676, Expect=0.0]} {Smed: dd_Smed_v6_737_0_1, dd_Smed_v6_737_0_1, [RH, Score=643, Expect=0.0]} {RNA1509_4083} {RNA1310_16202, RNA1509_4083} {RNA1509_4083, RNA815_5196}
6.	MligTC455_39166	204	4.25	Mlig455_053622	Neo: - Age: -		0.964	-	-	-	-	-	0.964	Mlig455_053622 {REF} {Length: 236} {NoTransDecoderORF} {RNA1509_49771} {RNA1310_129153} {RNA815_30495}
7.	MligTC455_31509	714	14.87	Mlig455_007271, Mlig455_068304	Neo: - Age: Up-Down-Up	SHOC2	0.959	-	-	-	-	-	0.959	Mlig455_007271 {REF} {Length: 5846} {Pfam: Leucine rich repeat [PF13855.8, score=200.9]; Leucine Rich repeats (2 copies) [PF12799.9, score=133.4]; Leucine-rich repeat [PF14580.8, score=33.7]; Leucine Rich Repeat [PF00560.35, score=33.0]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=23.5]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=412, Expect=1e-135]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=414, Expect=3e-136]} {Dmel: FBgn0038504, Sur-8, [Score=421, Expect=3e-138]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=371, Expect=2e-120]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=384, Expect=5e-125]} {RNA1509_32204} {RNA1310_3548} {RNA815_1725} Mlig455_068304 {REF} {Length: 4790} {Pfam: Leucine rich repeat [PF13855.8, score=113.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=73.1]; Leucine Rich Repeat [PF00560.35, score=23.8]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=214, Expect=3e-61]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=216, Expect=6e-62]} {Dmel: FBgn0038504, Sur-8, [Score=231, Expect=2e-67]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=200, Expect=1e-56]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=213, Expect=4e-61]} {RNA1509_27357, RNA1509_32204, RNA1509_7592} {RNA1310_3548, RNA1509_27357, RNA1509_32204, RNA1509_7592} {RNA1509_27357, RNA1509_32204, RNA1509_7592, RNA815_1725}
8.	MligTC455_23338	206	4.29	Mlig455_033045, Mlig455_053128	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.721	NEFH	0.956	-	-	-	-	-	0.956	Mlig455_033045 {REF} {Length: 9317} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=111, Expect=1e-24]} {Dmel: FBgn0029807, CG3108, [Score=53.1, Expect=8e-07]} {RNA1509_6333} {RNA1310_785} {RNA815_2080} Mlig455_053128 {REF} {Length: 16958} {Human: ENSG00000100285, NEFH, neurofilament heavy, [Score=51.6, Expect=5e-06]} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=114, Expect=1e-25]} {Dmel: FBgn0029807, CG3108, [Score=52.4, Expect=1e-06]} {RNA1509_28919, RNA1509_6333} {RNA1310_785, RNA1509_28919} {RNA1509_28919, RNA815_2080}
9.	MligTC455_23339	286	5.96	Mlig455_004644, Mlig455_014981, Mlig455_070982	Neo: - Age: Up-Down-Down		0.952	-	-	-	-	-	0.952	Mlig455_004644 {REF} {Length: 3082} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=110, Expect=2e-25]} {Dmel: FBgn0029807, CG3108, [Score=50.4, Expect=2e-06]} {RNA1509_26883} {RNA1310_785} {RNA815_4511} Mlig455_014981 {REF} {Length: 4380} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=72.0, Expect=8e-14]} {RNA1509_26883} {RNA1310_694} {RNA815_4511} Mlig455_070982 {REF} {Length: 2690} {RNA1509_26883} {RNA1310_785} {RNA815_4511}
10.	MligTC455_26448	1661	34.6	Mlig455_039764	Neo: - Age: Up-Down-Up	UBE2D1	0.952	-	-	-	0.952	-	-	Mlig455_039764 {REF} {Length: 850} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=176.4]} {Human: ENSG00000072401, UBE2D1, ubiquitin conjugating enzyme E2 D1, [Score=218, Expect=8e-74]; ENSG00000131508, UBE2D2, ubiquitin conjugating enzyme E2 D2, [Score=214, Expect=4e-72]; ENSG00000109332, UBE2D3, ubiquitin conjugating enzyme E2 D3, [Score=213, Expect=6e-72]; ENSG00000078967, UBE2D4, ubiquitin conjugating enzyme E2 D4 (putative), [Score=211, Expect=4e-71]} {Mouse: ENSMUSG00000019927, Ube2d1, ubiquitin-conjugating enzyme E2D 1, [Score=218, Expect=5e-74]; ENSMUSG00000091896, Ube2d2a, ubiquitin-conjugating enzyme E2D 2A, [Score=214, Expect=3e-72]; ENSMUSG00000078578, Ube2d3, ubiquitin-conjugating enzyme E2D 3, [Score=213, Expect=4e-72]; ENSMUSG00000063447, Ube2d2b, ubiquitin-conjugating enzyme E2D 2B, [Score=208, Expect=4e-70]} {Dmel: FBgn0011217, eff, effete, [Score=218, Expect=3e-74]} {Celegans: WBGene00002344, let-70, Ubiquitin-conjugating enzyme E2 2, [Score=215, Expect=6e-73]} {Smed: dd_Smed_v6_153_0_1, dd_Smed_v6_153_0_1, [Score=210, Expect=4e-71]} {RNA1509_25539, RNA1509_30467} {RNA1310_37179, RNA1509_25539, RNA1509_30467} {RNA1509_25539, RNA1509_30467, RNA815_19556.2}

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